Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Forward (+)

4092365 .. 4093610

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGAAGACCGTCGTGTCAAGTTGACGGGAAACCAAAACGTCGACCTTCCGGCGGAGATCATAGATGAGATTCTTTCCAGATTACCAGTGAAGCCCTTGTGCCGCTTCAAGTGTGTATCAAAGTCATGGCGGTCCCTGATCTCTGATCCTGATTTTATTGCCATGCACTCCTCTAAAGCCTTTGAGATTAAGGATGTGTTGTCCCAAAGACTAAAACTATTGTTTACTGACCGGGAAAGTGATTGCGTTTACTCTTTGGATGTTGGCCAGCTTCTCAACCATAATCATAATGTTGAAGTTGATGGTTTAGTAGCAACATCAGCTGAGCTCGATTTTGTTTTCGATAATCTTCCAAGAAGAGGTCGATACAATTGTACTGGCCTTATAACTGACCCTATTGAAACAAATAATGGCTTTGTGCATAACCATTTGATAACTAACCCTGCAACGAGGGAATTAAAGAAAGTACCATTGCCACCACCGTGGAGGCTACAAAGGGAGCCTGATTTTTTTGACTATTATGGTTTTGGATTTGATTACTCCACTAATCAATACAAGGTGGTTAACGTGCAGGTATATAACATTCATGACAACATTTGTGGGATTGTGTTTAGTGTCTATACATTGGAAACTAGTTCTTGGCGACGAGTTGAGGGTGAATTTCTCTACTTTCCTATTAGTATAGGTGGGATCGTGCTGAATGGCCATGTTCATTGGTTGGCCGTGTTTGAGGCCAAACAAGATCCATCATTGTTGATTATATCTTTTAATTTAGCAAAGGAGGAGGTCAGAGAAATTCCACTACCACCCATACGACGAGAATATTCATCAAGATTAGGGGTCTTTAGAAATTGGCTATGTATCACATTAGAACCAGGAGGATGCAAATCTACTGAGTTTTGGGTCATGAAGGAATATGGAGTGCGGGAGTCTTGGACTAAAATGCAGGTCTCCAAACCATATCAGGAATTATCACATTCCGGTTTCTGGACAGAATCACATGATCTGATGGTGTTTGATAAGTCATCATTGGTTATGTACAATTTTAATGATGGAACATTTTGGAATCTATCAATTGGTGATATTACCACAGCTGATGGTTATTTTGGTAGCTTCGGTATCTATGTGGAGAGTCTTGCTTCCAATGCTTCGCTTAAGAACATGAGAGAAGTAGAGAAGATTGATGAATCCACTCAATGGCATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

402

Amino Acids

46.34

Weight (kDa)

5.53

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 52	1.3e-11	F-box domain
F-box-like	PF12937	15 - 50	2.5e-08	F-box-like
FBA_1	PF07734	95 - 379	8.6e-21	F-box associated beta propeller domain
FBA_3	PF08268	127 - 324	6.8e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AasI	GACNNNNNNGTC	1 cut(s)	14
Acc36I	ACCTGC	2 cut(s)	562, 937
AccB7I	CCANNNNNTGG	1 cut(s)	1197
AccI	GTMKAC	1 cut(s)	42
AciI	CCGC	4 cut(s)	53, 103, 130, 925
AclWI	GGATC	3 cut(s)	140, 698, 737
AcoI	YGGCCR	3 cut(s)	265, 703, 720
AcsI	RAATTY	2 cut(s)	659, 795
AfaI	GTAC	3 cut(s)	376, 468, 1040
AfiI	CCNNNNNNNGG	4 cut(s)	52, 359, 987, 1197
AflII	CTTAAG	1 cut(s)	1154
AgsI	TTSAA	3 cut(s)	109, 296, 401
AhlI	ACTAGT	1 cut(s)	632
AjnI	CCWGG	1 cut(s)	874
AleI	CACNNNNGTG	1 cut(s)	481
AluBI	AGCT	5 cut(s)	271, 323, 328, 1094, 1113
AluI	AGCT	5 cut(s)	271, 323, 328, 1094, 1113
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	955
AlwI	GGATC	3 cut(s)	140, 698, 737
AoxI	GGCC	5 cut(s)	265, 379, 703, 720, 732
ApoI	RAATTY	2 cut(s)	659, 795
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	668, 1091
AvaII	GGWCC	1 cut(s)	132
BaeI	ACNNNNGTAYC	2 cut(s)	358, 391
BalI	TGGCCA	2 cut(s)	267, 705
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	330
BccI	CCATC	5 cut(s)	296, 754, 1003, 1046, 1091
BceAI	ACGGC	1 cut(s)	707
BciT130I	CCWGG	1 cut(s)	876
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	955
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	1 cut(s)	633
BfrI	CTTAAG	1 cut(s)	1154
BfuAI	ACCTGC	2 cut(s)	562, 937
BisI	GCNGC	1 cut(s)	103
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	233, 876
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	134, 501
BmrFI	CCNGG	2 cut(s)	233, 876
BmsI	GCATC	1 cut(s)	872
BpiI	GAAGAC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	886
BsaI	GGTCTC	1 cut(s)	955
BsaJI	CCNNGG	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	980
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 359, 987, 1197
Bse1I	ACTGG	2 cut(s)	86, 382
Bse3DI	GCAATG	1 cut(s)	470
Bse8I	GATNNNNATC	1 cut(s)	886
BseBI	CCWGG	1 cut(s)	876
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	4 cut(s)	199, 265, 887, 1201
BseJI	GATNNNNATC	1 cut(s)	886
BseLI	CCNNNNNNNGG	4 cut(s)	52, 359, 987, 1197
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	2 cut(s)	315, 885
BseNI	ACTGG	2 cut(s)	86, 382
BseRI	GAGGAG	2 cut(s)	160, 797
BsgI	GTGCAG	1 cut(s)	590
BshFI	GGCC	5 cut(s)	267, 381, 705, 722, 734
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	3 cut(s)	50, 232, 981
BslFI	GGGAC	2 cut(s)	118, 187
BslI	CCNNNNNNNGG	4 cut(s)	52, 359, 987, 1197
BsmAI	GTCTC	1 cut(s)	955
BsmFI	GGGAC	2 cut(s)	118, 187
BsnI	GGCC	5 cut(s)	267, 381, 705, 722, 734
Bso31I	GGTCTC	1 cut(s)	955
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp1407I	TGTACA	1 cut(s)	1038
Bsp143I	GATC	6 cut(s)	57, 138, 145, 690, 742, 1003
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	4 cut(s)	53, 103, 130, 925
BspANI	GGCC	5 cut(s)	267, 381, 705, 722, 734
BspCNI	CTCAG	2 cut(s)	316, 886
BspHI	TCATGA	2 cut(s)	586, 906
BspLI	GGNNCC	2 cut(s)	134, 501
BspMI	ACCTGC	2 cut(s)	562, 937
BspPI	GGATC	3 cut(s)	140, 698, 737
BspTI	CTTAAG	1 cut(s)	1154
BspTNI	GGTCTC	1 cut(s)	955
BsrDI	GCAATG	1 cut(s)	470
BsrGI	TGTACA	1 cut(s)	1038
BsrI	ACTGG	2 cut(s)	86, 382
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	6 cut(s)	57, 138, 145, 690, 742, 1003
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	2 cut(s)	11, 483
Bst6I	CTCTTC	1 cut(s)	352
BstAFI	CTTAAG	1 cut(s)	1154
BstAUI	TGTACA	1 cut(s)	1038
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	324, 894
BstDSI	CCRYGG	1 cut(s)	482
BstF5I	GGATG	4 cut(s)	199, 265, 887, 1201
BstKTI	GATC	6 cut(s)	60, 141, 148, 693, 745, 1006
BstMAI	GTCTC	1 cut(s)	955
BstMBI	GATC	6 cut(s)	57, 138, 145, 690, 742, 1003
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 1145
BstNI	CCWGG	1 cut(s)	876
BstSCI	CCNGG	2 cut(s)	231, 874
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	742
BstXI	CCANNNNNNTGG	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	742
BsuRI	GGCC	5 cut(s)	267, 381, 705, 722, 734
BtgI	CCRYGG	1 cut(s)	482
BtsCI	GGATG	4 cut(s)	199, 265, 887, 1201
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	2 cut(s)	562, 937
Cac8I	GCNNGC	1 cut(s)	269
CciI	TCATGA	2 cut(s)	586, 906
Cfr13I	GGNCC	1 cut(s)	132
Csp6I	GTAC	3 cut(s)	375, 467, 1039
CspCI	CAANNNNNGTGG	2 cut(s)	580, 615
CviAII	CATG	7 cut(s)	126, 163, 587, 707, 907, 1001, 1162
CviQI	GTAC	3 cut(s)	375, 467, 1039
DdeI	CTNAG	2 cut(s)	324, 894
DpnI	GATC	6 cut(s)	59, 140, 147, 692, 744, 1005
DpnII	GATC	6 cut(s)	57, 138, 145, 690, 742, 1003
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	3 cut(s)	265, 703, 720
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	955
Eco47I	GGWCC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	874
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	7 cut(s)	129, 166, 590, 710, 910, 1004, 1165
FaqI	GGGAC	2 cut(s)	118, 187
FatI	CATG	7 cut(s)	125, 162, 586, 706, 906, 1000, 1161
FauI	CCCGC	1 cut(s)	918
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	4 cut(s)	206, 272, 894, 1188
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	1 cut(s)	633
GluI	GCNGC	1 cut(s)	103
HaeIII	GGCC	5 cut(s)	267, 381, 705, 722, 734
HapII	CCGG	3 cut(s)	50, 232, 981
Hin1II	CATG	7 cut(s)	129, 166, 590, 710, 910, 1004, 1165
HincII	GTYRAC	3 cut(s)	24, 43, 565
HindII	GTYRAC	3 cut(s)	24, 43, 565
HinfI	GANTC	6 cut(s)	70, 929, 995, 1066, 1132, 1187
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	3 cut(s)	50, 232, 981
HphI	GGTGA	2 cut(s)	668, 1091
Hpy166II	GTNNAC	5 cut(s)	24, 43, 225, 250, 565
Hpy188I	TCNGA	3 cut(s)	145, 791, 1008
Hpy188III	TCNNGA	7 cut(s)	78, 149, 587, 831, 907, 965, 988
Hpy8I	GTNNAC	5 cut(s)	24, 43, 225, 250, 565
Hpy99I	CGWCG	4 cut(s)	15, 44, 648, 819
HpyAV	CCTTC	2 cut(s)	56, 904
HpyCH4III	ACNGT	2 cut(s)	11, 483
HpyCH4IV	ACGT	2 cut(s)	39, 567
HpyCH4V	TGCA	6 cut(s)	166, 421, 446, 571, 885, 946
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 1145
HpyF3I	CTNAG	2 cut(s)	324, 894
HpySE526I	ACGT	2 cut(s)	39, 567
Hsp92II	CATG	7 cut(s)	129, 166, 590, 710, 910, 1004, 1165
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	6 cut(s)	57, 138, 145, 690, 742, 1003
LmnI	GCTCC	1 cut(s)	499
LweI	GCATC	1 cut(s)	872
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	2 cut(s)	39, 567
MalI	GATC	6 cut(s)	59, 140, 147, 692, 744, 1005
MboI	GATC	6 cut(s)	57, 138, 145, 690, 742, 1003
MboII	GAAGA	4 cut(s)	17, 341, 369, 1189
MfeI	CAATTG	2 cut(s)	370, 1074
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	2 cut(s)	267, 705
MluCI	AATT	9 cut(s)	370, 455, 659, 769, 795, 850, 968, 1042, 1074
MluNI	TGGCCA	2 cut(s)	267, 705
MlyI	GAGTC	2 cut(s)	938, 1141
MnlI	CCTC	9 cut(s)	181, 353, 444, 480, 646, 724, 775, 778, 872
Mox20I	TGGCCA	2 cut(s)	267, 705
MscI	TGGCCA	2 cut(s)	267, 705
MseI	TTAA	6 cut(s)	189, 458, 564, 768, 1047, 1155
MslI	CAYNNNNRTG	1 cut(s)	481
Msp20I	TGGCCA	2 cut(s)	267, 705
MspA1I	CMGCKG	2 cut(s)	323, 1094
MspCI	CTTAAG	1 cut(s)	1154
MspI	CCGG	3 cut(s)	50, 232, 981
MspR9I	CCNGG	2 cut(s)	233, 876
MunI	CAATTG	2 cut(s)	370, 1074
MvaI	CCWGG	1 cut(s)	876
MwoI	GCNNNNNNNGC	2 cut(s)	320, 1145
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	6 cut(s)	57, 138, 145, 690, 742, 1003
NlaIII	CATG	7 cut(s)	129, 166, 590, 710, 910, 1004, 1165
NlaIV	GGNNCC	2 cut(s)	134, 501
OliI	CACNNNNGTG	1 cut(s)	481
PagI	TCATGA	2 cut(s)	586, 906
PfeI	GAWTC	4 cut(s)	70, 995, 1066, 1187
PflMI	CCANNNNNTGG	1 cut(s)	1197
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	2 cut(s)	937, 1140
PpsI	GAGTC	2 cut(s)	937, 1140
PsiI	TTATAA	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	874
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	2 cut(s)	134, 501
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	742
PvuII	CAGCTG	2 cut(s)	323, 1094
RsaI	GTAC	3 cut(s)	376, 468, 1040
RsaNI	GTAC	3 cut(s)	375, 467, 1039
RseI	CAYNNNNRTG	1 cut(s)	481
SacI	GAGCTC	1 cut(s)	330
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	6 cut(s)	189, 458, 564, 768, 1047, 1155
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	6 cut(s)	57, 138, 145, 690, 742, 1003
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	2 cut(s)	938, 1141
ScrFI	CCNGG	2 cut(s)	233, 876
SduI	GDGCHC	1 cut(s)	330
SfaNI	GCATC	1 cut(s)	872
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	1154
SmoI	CTYRAG	1 cut(s)	1154
SpeI	ACTAGT	1 cut(s)	632
Sse9I	AATT	9 cut(s)	370, 455, 659, 769, 795, 850, 968, 1042, 1074
SsiI	CCGC	4 cut(s)	53, 103, 130, 925
SspI	AATATT	1 cut(s)	824
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	231, 874
TaaI	ACNGT	2 cut(s)	11, 483
TaiI	ACGT	2 cut(s)	42, 570
TaqI	TCGA	4 cut(s)	42, 330, 342, 364
TasI	AATT	9 cut(s)	370, 455, 659, 769, 795, 850, 968, 1042, 1074
TatI	WGTACW	2 cut(s)	374, 1038
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	4 cut(s)	70, 995, 1066, 1187
Tru1I	TTAA	6 cut(s)	189, 458, 564, 768, 1047, 1155
Tru9I	TTAA	6 cut(s)	189, 458, 564, 768, 1047, 1155
TscAI	CASTG	1 cut(s)	93
TspDTI	ATGAA	5 cut(s)	575, 701, 816, 923, 1200
TspRI	CASTG	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	1197
Vha464I	CTTAAG	1 cut(s)	1154
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	2 cut(s)	659, 795
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.