Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Forward (+)

6126068 .. 6128000

Gene Structure 1933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATGATCACGACGATTCTCCTTGCTGCTACCGTTTCCATGGCAGATGATGCAGTCATACCGGCCGAAAAATCCGGACTGGACAAGTGGTTCAAAGACAATGTGAAGCCGTCGGCAGAACAGAAGTCCTCGCTTGACCCTGCCCCTGTCAAGGCGGAGGAGGGCGATGCCAAAGTTGTGAAGGTCATGCAAAATGGGGGAGACTACAAGAAAATCTCGGAGGCCATTGATAGCATTCCGGCCGGGAACACTAAACGTGACACCCTTTGTGATGATCAAGGCTACGTTGAAGCAACTGTAGATTTCATCTTCCGAAGAGGAAAATCTCTCTATCTGGCAAGGGAAGGTGATGAGGACAACGGATACTCATTTGTTCACAGTAACATAACCGGGACTGGCAATGGCACATATTTGGGCAGGGCTTGGAGAGCTGCTCCCAAGGTGTTGTTTGCCTACACCAACATGGGAGAAGTTGTCCAGCCGGAAGGATGGACCGACAATTTCCACCCCGAATACGACAACAAAGTTCAATTTGGAGAGTACAAGAATACTGGTCCAGGTTCAAGCATGAGTAAGAGAGTGGAATTCACAAAAGAGCCGAGCGATCAAGATTCCAAACGTTTCATCAGCCTAGGCTTTATTGAGGGTTCCAAATGGTTGCTTCCTCCTCCTAATCCAAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

228

Amino Acids

25.13

Weight (kDa)

5.22

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	127 - 216	1.8e-13	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	1 cut(s)	155
AclI	AACGTT	1 cut(s)	619
AcoI	YGGCCR	2 cut(s)	63, 240
AcsI	RAATTY	1 cut(s)	584
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	4 cut(s)	94, 290, 530, 564
AjnI	CCWGG	1 cut(s)	556
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	195
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	3 cut(s)	63, 222, 240
ApeKI	GCWGC	2 cut(s)	26, 431
ApoI	RAATTY	1 cut(s)	584
AspA2I	CCTAGG	1 cut(s)	631
AspS9I	GGNCC	2 cut(s)	492, 554
AsuC2I	CCSGG	2 cut(s)	244, 391
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	492, 554
AvrII	CCTAGG	1 cut(s)	631
BbvI	GCAGC	2 cut(s)	13, 418
BccI	CCATC	1 cut(s)	483
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	558
BciVI	GTATCC	1 cut(s)	356
BclI	TGATCA	2 cut(s)	6, 274
BcnI	CCSGG	2 cut(s)	244, 391
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	1 cut(s)	632
BfmI	CTRYAG	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	356
BisI	GCNGC	2 cut(s)	27, 432
BlnI	CCTAGG	1 cut(s)	631
BlsI	GCNGC	2 cut(s)	28, 433
Bme1390I	CCNGG	3 cut(s)	244, 391, 558
Bme18I	GGWCC	2 cut(s)	492, 554
BmgT120I	GGNCC	2 cut(s)	492, 554
BmiI	GGNNCC	1 cut(s)	649
BmrFI	CCNGG	3 cut(s)	244, 391, 558
BmsI	GCATC	2 cut(s)	40, 157
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BpuMI	CCSGG	2 cut(s)	244, 391
BsaJI	CCNNGG	3 cut(s)	39, 438, 631
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	3 cut(s)	84, 400, 556
Bse3DI	GCAATG	1 cut(s)	406
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	3 cut(s)	39, 438, 631
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	406
BseNI	ACTGG	3 cut(s)	84, 400, 556
BseRI	GAGGAG	2 cut(s)	173, 657
BseX3I	CGGCCG	2 cut(s)	63, 240
BseXI	GCAGC	2 cut(s)	13, 418
Bsh1285I	CGRYCG	2 cut(s)	66, 243
BshFI	GGCC	3 cut(s)	65, 224, 242
BsiEI	CGRYCG	2 cut(s)	66, 243
BsiSI	CCGG	6 cut(s)	62, 75, 239, 243, 390, 482
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	65, 224, 242
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	6, 274, 604
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	3 cut(s)	65, 224, 242
BspEI	TCCGGA	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	406
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	3 cut(s)	84, 400, 556
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	3 cut(s)	39, 438, 631
BssMI	GATC	3 cut(s)	6, 274, 604
BssT1I	CCWWGG	3 cut(s)	39, 438, 631
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	34, 298, 380
Bst6I	CTCTTC	1 cut(s)	310
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	494
BstKTI	GATC	3 cut(s)	9, 277, 607
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	3 cut(s)	6, 274, 604
BstMCI	CGRYCG	2 cut(s)	66, 243
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 428
BstNI	CCWGG	1 cut(s)	558
BstSCI	CCNGG	3 cut(s)	242, 389, 556
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	13, 418
BstZI	CGGCCG	2 cut(s)	63, 240
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	3 cut(s)	65, 224, 242
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	494
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	492, 554
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	4 cut(s)	40, 187, 463, 568
CviQI	GTAC	1 cut(s)	541
DpnI	GATC	3 cut(s)	8, 276, 606
DpnII	GATC	3 cut(s)	6, 274, 604
EaeI	YGGCCR	2 cut(s)	63, 240
EagI	CGGCCG	2 cut(s)	63, 240
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
EciI	GGCGGA	1 cut(s)	170
EclXI	CGGCCG	2 cut(s)	63, 240
Eco130I	CCWWGG	3 cut(s)	39, 438, 631
Eco47I	GGWCC	2 cut(s)	492, 554
Eco52I	CGGCCG	2 cut(s)	63, 240
EcoRI	GAATTC	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	3 cut(s)	39, 438, 631
ErhI	CCWWGG	3 cut(s)	39, 438, 631
FaeI	CATG	4 cut(s)	43, 190, 466, 571
FaiI	YATR	7 cut(s)	41, 59, 188, 386, 409, 464, 569
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	4 cut(s)	39, 186, 462, 567
FbaI	TGATCA	2 cut(s)	6, 274
Fnu4HI	GCNGC	2 cut(s)	27, 432
FokI	GGATG	1 cut(s)	501
Fsp4HI	GCNGC	2 cut(s)	27, 432
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	2 cut(s)	27, 432
HaeIII	GGCC	3 cut(s)	65, 224, 242
HapII	CCGG	6 cut(s)	62, 75, 239, 243, 390, 482
Hin1II	CATG	4 cut(s)	43, 190, 466, 571
HinfI	GANTC	2 cut(s)	16, 611
HpaII	CCGG	6 cut(s)	62, 75, 239, 243, 390, 482
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	220, 314
Hpy188III	TCNNGA	3 cut(s)	10, 75, 608
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	2 cut(s)	16, 115
HpyAV	CCTTC	3 cut(s)	175, 338, 479
HpyCH4III	ACNGT	3 cut(s)	34, 298, 380
HpyCH4IV	ACGT	3 cut(s)	256, 285, 619
HpyCH4V	TGCA	2 cut(s)	53, 190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 428
HpySE526I	ACGT	3 cut(s)	256, 285, 619
Hsp92II	CATG	4 cut(s)	43, 190, 466, 571
Kpn2I	TCCGGA	1 cut(s)	74
Ksp22I	TGATCA	2 cut(s)	6, 274
Kzo9I	GATC	3 cut(s)	6, 274, 604
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	2 cut(s)	13, 418
LweI	GCATC	2 cut(s)	40, 157
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	3 cut(s)	256, 285, 619
MaeIII	GTNAC	2 cut(s)	257, 380
MalI	GATC	3 cut(s)	8, 276, 606
MboI	GATC	3 cut(s)	6, 274, 604
MboII	GAAGA	2 cut(s)	301, 327
MluCI	AATT	3 cut(s)	499, 530, 584
MnlI	CCTC	9 cut(s)	139, 151, 154, 214, 311, 346, 637, 675, 678
MroI	TCCGGA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	6 cut(s)	62, 75, 239, 243, 390, 482
MspR9I	CCNGG	3 cut(s)	244, 391, 558
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	2 cut(s)	50, 428
NciI	CCSGG	2 cut(s)	244, 391
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	3 cut(s)	6, 274, 604
NlaIII	CATG	4 cut(s)	43, 190, 466, 571
NlaIV	GGNNCC	1 cut(s)	649
NmeAIII	GCCGAG	1 cut(s)	624
NmuCI	GTSAC	1 cut(s)	257
PctI	GAATGC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	16, 611
PkrI	GCNGC	2 cut(s)	28, 433
Psp1406I	AACGTT	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	649
PspPI	GGNCC	2 cut(s)	492, 554
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	461
SatI	GCNGC	2 cut(s)	27, 432
Sau3AI	GATC	3 cut(s)	6, 274, 604
Sau96I	GGNCC	2 cut(s)	492, 554
ScrFI	CCNGG	3 cut(s)	244, 391, 558
SetI	ASST	9 cut(s)	186, 259, 288, 349, 433, 444, 562, 622, 684
SfaNI	GCATC	2 cut(s)	40, 157
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	2 cut(s)	492, 554
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	3 cut(s)	499, 530, 584
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	3 cut(s)	242, 389, 556
StyI	CCWWGG	3 cut(s)	39, 438, 631
TaaI	ACNGT	3 cut(s)	34, 298, 380
TaiI	ACGT	3 cut(s)	259, 288, 622
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	3 cut(s)	499, 530, 584
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	2 cut(s)	16, 611
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	2 cut(s)	26, 431
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	295, 613
TspGWI	ACGGA	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	492, 554
XapI	RAATTY	1 cut(s)	584
XmaJI	CCTAGG	1 cut(s)	631
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.