Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

60091967 .. 60093670

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG378700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCTGGAAGAAAGAAATGGGTGGGCATCCATGCAGCTCTCATGATGATCACGACGATTCTCCTTGCTGCTACTGTTTCCATGGCTGATGGTGATGCAGTCGTACCAGCCGAAAAATCCGAACTGGACAAGTGGTTCAACAACAATGTGAAGCCGTTCAAAGAACAAAAGTCGCTTGACGCTGCCCTTGTCACGGCGGAGGAGGGTGCGAAAGTTGTGAAGGTCAAGCAAGATGGGGGAGACTACAAGAAAATCATGGAGGCCATTGAGAGCATTCCGGCCGGGAACACTAAGCGTGTGATTGTATACATTGGAGGGGGTACCTACAATGAGAAAATAACAATTCCAAAAAACAAACCATTTGTCACATTAGTTGGGGATTCAAAAAACATTCCGAATTTGACATATTCCGGCGATGCCGCCAAATATGGGACGGTGAATAGTGCTACATTGGCAGTGGAATCCGACTACTTCACTGCTGCTAACTTAAATATCATAAATTCCTCGCCGAAACCAGATGGAAAAAGAGAAGGCGCACAAGCAGTTGCCTTGAGGGTGTCCGGGACCAAGGCCGCATTGTACAATTGCAAAATGTATGGATTTCAGGACACCATTTGTGATGATAAAGGCTATCATTTCTTCAAGGACTGCTACGTTGAAGGAACTGTAGATTTCATCTTTGGAAGTGGAAAATCTCTCTATTTGAGCACACATTTACATGTTTTAGGGGACACCGGAATGACGGTGATAACCGCACAGGCGAGGGACAGTAAAGAGGACACCGGATACTCATTTGTTCACTGCAATGTAACGGGGACCGCCAAGGGCACATTTTTGGGCAGAGCTTGGAGGGCTAGTCCCCAGGTGGTGTATGCCTACACCGCCATGGGAGAAGTTGTGAGTCCAGAAGGATGGACCGACAATCGCCACCCCGAATACGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

315

Amino Acids

34.17

Weight (kDa)

7.62

Isoelectric Point (pI)

26.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	73 - 307	9.1e-51	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	6 cut(s)	197, 420, 573, 753, 819, 882
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	2 cut(s)	397, 499
AfaI	GTAC	3 cut(s)	105, 322, 581
AfiI	CCNNNNNNNGG	2 cut(s)	193, 429
AflIII	ACRYGT	1 cut(s)	718
AgsI	TTSAA	5 cut(s)	139, 160, 384, 643, 659
AjnI	CCWGG	1 cut(s)	861
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	2 cut(s)	38, 845
AluI	AGCT	2 cut(s)	38, 845
Alw21I	GWGCWC	1 cut(s)	710
Alw26I	GTCTC	1 cut(s)	234
AoxI	GGCC	3 cut(s)	261, 279, 570
ApeKI	GCWGC	4 cut(s)	35, 68, 182, 479
ApoI	RAATTY	2 cut(s)	397, 499
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
Asp700I	GAANNNNTTC	1 cut(s)	155
Asp718I	GGTACC	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	3 cut(s)	564, 816, 915
AsuC2I	CCSGG	2 cut(s)	283, 562
AsuHPI	GGTGA	3 cut(s)	104, 448, 757
AvaII	GGWCC	3 cut(s)	564, 816, 915
BaeGI	GKGCMC	1 cut(s)	830
BanI	GGYRCC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	710
BbvI	GCAGC	4 cut(s)	47, 55, 169, 466
BccI	CCATC	4 cut(s)	83, 227, 512, 906
BceAI	ACGGC	2 cut(s)	139, 210
BciT130I	CCWGG	1 cut(s)	863
BciVI	GTATCC	1 cut(s)	779
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	2 cut(s)	283, 562
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	855
BfmI	CTRYAG	1 cut(s)	666
BfuI	GTATCC	1 cut(s)	779
BisI	GCNGC	6 cut(s)	36, 69, 183, 420, 480, 573
BlsI	GCNGC	6 cut(s)	37, 70, 184, 421, 481, 574
Bme1390I	CCNGG	3 cut(s)	283, 562, 863
Bme18I	GGWCC	3 cut(s)	564, 816, 915
BmgT120I	GGNCC	3 cut(s)	564, 816, 915
BmiI	GGNNCC	3 cut(s)	322, 565, 817
BmrFI	CCNGG	3 cut(s)	283, 562, 863
BmsI	GCATC	3 cut(s)	36, 85, 406
BpuEI	CTTGAG	1 cut(s)	571
BpuMI	CCSGG	2 cut(s)	283, 562
BsaJI	CCNNGG	5 cut(s)	81, 567, 822, 861, 885
BsaWI	WCCGGW	2 cut(s)	734, 782
BsaXI	ACNNNNNCTCC	4 cut(s)	841, 871, 882, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 429
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	811
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	5 cut(s)	81, 567, 822, 861, 885
BseGI	GGATG	2 cut(s)	27, 917
BseLI	CCNNNNNNNGG	2 cut(s)	193, 429
BseMI	GCAATG	1 cut(s)	811
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	830
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	4 cut(s)	47, 55, 169, 466
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	263, 281, 572
BshNI	GGYRCC	1 cut(s)	320
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	710
BsiSI	CCGG	6 cut(s)	278, 282, 411, 561, 735, 783
BslFI	GGGAC	6 cut(s)	445, 577, 743, 779, 829, 843
BslI	CCNNNNNNNGG	2 cut(s)	193, 429
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	6 cut(s)	445, 577, 743, 779, 829, 843
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	3 cut(s)	263, 281, 572
Bsp1286I	GDGCHC	2 cut(s)	710, 830
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	1 cut(s)	48
Bsp19I	CCATGG	2 cut(s)	81, 885
BspACI	CCGC	6 cut(s)	197, 420, 573, 753, 819, 882
BspANI	GGCC	3 cut(s)	263, 281, 572
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	3 cut(s)	322, 565, 817
BspT107I	GGYRCC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	811
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	5 cut(s)	81, 567, 822, 861, 885
BssMI	GATC	1 cut(s)	48
BssNAI	GTATAC	1 cut(s)	307
BssT1I	CCWWGG	4 cut(s)	81, 567, 822, 885
Bst1107I	GTATAC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	5 cut(s)	76, 436, 667, 745, 770
BstAUI	TGTACA	1 cut(s)	579
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	2 cut(s)	81, 885
BstF5I	GGATG	2 cut(s)	27, 917
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	48
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 851, 881
BstNI	CCWGG	1 cut(s)	863
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	3 cut(s)	281, 560, 861
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	830
BstV1I	GCAGC	4 cut(s)	47, 55, 169, 466
BstXI	CCANNNNNNTGG	1 cut(s)	912
BstZ17I	GTATAC	1 cut(s)	307
BstZI	CGGCCG	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	779
BsuRI	GGCC	3 cut(s)	263, 281, 572
BtgI	CCRYGG	2 cut(s)	81, 885
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	27, 917
BtsI	GCAGTG	3 cut(s)	462, 474, 799
BtsIMutI	CAGTG	3 cut(s)	462, 474, 799
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	536
Cfr13I	GGNCC	3 cut(s)	564, 816, 915
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	3 cut(s)	104, 321, 580
CviAII	CATG	6 cut(s)	32, 43, 82, 256, 719, 886
CviQI	GTAC	3 cut(s)	104, 321, 580
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	279
EagI	CGGCCG	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	212
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	4 cut(s)	81, 567, 822, 885
Eco47I	GGWCC	3 cut(s)	564, 816, 915
Eco52I	CGGCCG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	861
EcoT14I	CCWWGG	4 cut(s)	81, 567, 822, 885
ErhI	CCWWGG	4 cut(s)	81, 567, 822, 885
FaeI	CATG	6 cut(s)	35, 46, 85, 259, 722, 889
FaqI	GGGAC	6 cut(s)	445, 577, 743, 779, 829, 843
FatI	CATG	6 cut(s)	31, 42, 81, 255, 718, 885
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	6 cut(s)	36, 69, 183, 420, 480, 573
FokI	GGATG	2 cut(s)	14, 924
Fsp4HI	GCNGC	6 cut(s)	36, 69, 183, 420, 480, 573
FspBI	CTAG	1 cut(s)	855
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	6 cut(s)	36, 69, 183, 420, 480, 573
HaeIII	GGCC	3 cut(s)	263, 281, 572
HapII	CCGG	6 cut(s)	278, 282, 411, 561, 735, 783
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	6 cut(s)	35, 46, 85, 259, 722, 889
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HinfI	GANTC	4 cut(s)	58, 380, 461, 901
HpaII	CCGG	6 cut(s)	278, 282, 411, 561, 735, 783
HphI	GGTGA	3 cut(s)	104, 448, 757
Hpy166II	GTNNAC	2 cut(s)	307, 799
Hpy188I	TCNGA	3 cut(s)	121, 396, 466
Hpy188III	TCNNGA	4 cut(s)	43, 52, 605, 905
Hpy8I	GTNNAC	2 cut(s)	307, 799
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	4 cut(s)	214, 524, 653, 902
HpyCH4III	ACNGT	5 cut(s)	76, 436, 667, 745, 770
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	4 cut(s)	35, 98, 588, 804
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 851, 881
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	6 cut(s)	35, 46, 85, 259, 722, 889
HspAI	GCGC	1 cut(s)	534
KpnI	GGTACC	1 cut(s)	324
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	48
Lsp1109I	GCAGC	4 cut(s)	47, 55, 169, 466
LweI	GCATC	3 cut(s)	36, 85, 406
MaeI	CTAG	1 cut(s)	855
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	3 cut(s)	190, 364, 808
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	21, 631
MfeI	CAATTG	1 cut(s)	583
MhlI	GDGCHC	2 cut(s)	710, 830
MluCI	AATT	4 cut(s)	342, 397, 499, 583
MlyI	GAGTC	1 cut(s)	910
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	9 cut(s)	193, 196, 253, 308, 514, 546, 756, 769, 843
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	4 cut(s)	717, 737, 804, 884
MspI	CCGG	6 cut(s)	278, 282, 411, 561, 735, 783
MspR9I	CCNGG	3 cut(s)	283, 562, 863
MunI	CAATTG	1 cut(s)	583
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	863
MwoI	GCNNNNNNNGC	3 cut(s)	452, 851, 881
NciI	CCSGG	2 cut(s)	283, 562
NcoI	CCATGG	2 cut(s)	81, 885
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	6 cut(s)	35, 46, 85, 259, 722, 889
NlaIV	GGNNCC	3 cut(s)	322, 565, 817
NmuCI	GTSAC	2 cut(s)	190, 364
NspI	RCATGY	1 cut(s)	722
PagI	TCATGA	1 cut(s)	42
PciI	ACATGT	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	58, 380, 461
PfoI	TCCNGGA	1 cut(s)	560
PkrI	GCNGC	6 cut(s)	37, 70, 184, 421, 481, 574
PleI	GAGTC	1 cut(s)	909
PpsI	GAGTC	1 cut(s)	909
PscI	ACATGT	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	3 cut(s)	322, 565, 817
PspPI	GGNCC	3 cut(s)	564, 816, 915
RsaI	GTAC	3 cut(s)	105, 322, 581
RsaNI	GTAC	3 cut(s)	104, 321, 580
RseI	CAYNNNNRTG	4 cut(s)	717, 737, 804, 884
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	6 cut(s)	36, 69, 183, 420, 480, 573
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	3 cut(s)	564, 816, 915
SchI	GAGTC	1 cut(s)	910
ScrFI	CCNGG	3 cut(s)	283, 562, 863
SduI	GDGCHC	2 cut(s)	710, 830
SetI	ASST	6 cut(s)	40, 225, 326, 657, 847, 867
SfaNI	GCATC	3 cut(s)	36, 85, 406
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	3 cut(s)	564, 816, 915
SmiMI	CAYNNNNRTG	4 cut(s)	717, 737, 804, 884
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	4 cut(s)	342, 397, 499, 583
SsiI	CCGC	6 cut(s)	197, 420, 573, 753, 819, 882
SspMI	CTAG	1 cut(s)	855
StyD4I	CCNGG	3 cut(s)	281, 560, 861
StyI	CCWWGG	4 cut(s)	81, 567, 822, 885
TaaI	ACNGT	5 cut(s)	76, 436, 667, 745, 770
TaiI	ACGT	1 cut(s)	657
TaqII	GACCGA	1 cut(s)	932
TasI	AATT	4 cut(s)	342, 397, 499, 583
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	2 cut(s)	422, 575
TfiI	GAWTC	3 cut(s)	58, 380, 461
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	3 cut(s)	462, 481, 806
TseFI	GTSAC	2 cut(s)	190, 364
TseI	GCWGC	4 cut(s)	35, 68, 182, 479
Tsp45I	GTSAC	2 cut(s)	190, 364
TspDTI	ATGAA	1 cut(s)	664
TspRI	CASTG	3 cut(s)	462, 481, 806
VpaK11BI	GGWCC	3 cut(s)	564, 816, 915
XapI	RAATTY	2 cut(s)	397, 499
XceI	RCATGY	1 cut(s)	722
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.