Prupe.3G149100_v2.0.a1

Pectinesterase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
16292106 .. 16294207
2102 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G149100.1

Sequence Viewer

Length: 1128 bp
ATGGCTGGAAGAACGACATGCATGGTCATGCCTGCAGCTGGGTTTGTAATTATAACAATTCTCCTCGCTGCTAGTACCACCGCCGCCGACGATTCGACACCGATACCTTCTGATGGTTCCCAAGTGGGCAGTTGGTTCGATAACAACGTCAAGCCTTTAGCAGAACGCAAGGGCGCGCTTGACGCCGCCCTTGTGACGGCTGAGGATGGTCCAAAACTTATCAAGGTCATGAAAGATGGAAGTGGAAACTTCAAAACCCTCACGGACGCCATTAATAGCATCCCTGAGAGGAACACCAAGCGTGTGGTTGTGTACATCGGAGGTGGAGTGTACAACGAGAAAATCAATATCCCACAAAATAAACCATTTGTGACGTTGTATGGATCGCCAAAAAATATGCCAACTTTGATGTTTGATGGTACGGCTGAGAAGTATGGGACTGTCTACAGTGGTACATTGATTGTGGAATCTGACTATTTTAGGGCTGCTAACATTATTGTTACGAATTCGGCGCCAGAGCCGGATGGGATAAGGTCTGGTGCGCAGGCTGTTGCATTGCAGATCTCCGGGGACAAGGCAGCCTTCTACAATTGCAAGTTTATTGGATTTCAGGACACTCTTTATGATTACAAGGGCTTGCATTTCTTCAAGGATTGTTACATTGAAGGCACGGTAGATTTCATCTTCGGAAAAGGAAAATCTCTCTACTTGAACACTGAGATACATGTCCTAGAGCGGAATATTACGGTGATAACGGCACAACAAAGGGATGCTTTGGAGGATAATGGATTTTCATTTGTGCATTGCAAAATAACTGGCACTACATATGTGAGGAGTACATACTTGGGCAGGGCTTGGGGGAGCAGCCCCACTGTGGTGTTTGCCTACACCGACATGGCCAACGTCGTTCATCCTGAACGATGGAATGACTTTGGCCACCCCGAACGTTCCAACAATATGTTCTATGGAGAGTTTCAGAATTCGGGTCCAGGGTCAAACATAAGCGGGCAAGCACGCTACACTAAAAAGCTAAGCGATGTAGAAGCCAAATCCTTCCTCAGCCTTGGCTATATTCAGGGTTCCAAATGGCTTCTTCCTCATCTAAATACAAGATCCAGACATATATAG

Protein Analysis

376

Amino Acids

41.17

Weight (kDa)

7.65

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 53
Acc16I TGCGCA 1 cut(s) 543
AccB1I GGYRCC 1 cut(s) 511
AccBSI CCGCTC 1 cut(s) 736
AccI GTMKAC 1 cut(s) 444
AccII CGCG 1 cut(s) 176
AciI CCGC 5 cut(s) 81, 84, 186, 736, 1005
AclI AACGTT 1 cut(s) 946
AclWI GGATC 2 cut(s) 391, 1107
AcoI YGGCCR 2 cut(s) 897, 934
AcsI RAATTY 2 cut(s) 505, 979
AcyI GRCGYC 3 cut(s) 183, 267, 512
AfaI GTAC 6 cut(s) 76, 314, 332, 421, 454, 838
AfiI CCNNNNNNNGG 4 cut(s) 38, 113, 196, 874
AflIII ACRYGT 1 cut(s) 724
AgsI TTSAA 4 cut(s) 253, 649, 665, 712
AjnI CCWGG 1 cut(s) 988
AjuI GAANNNNNNNTTGG 2 cut(s) 944, 976
AleI CACNNNNGTG 1 cut(s) 875
AluBI AGCT 2 cut(s) 38, 1030
AluI AGCT 2 cut(s) 38, 1030
AlwI GGATC 2 cut(s) 391, 1107
AoxI GGCC 2 cut(s) 897, 934
ApeKI GCWGC 5 cut(s) 35, 68, 485, 578, 864
ApoI RAATTY 2 cut(s) 505, 979
AseI ATTAAT 1 cut(s) 273
AspLEI GCGC 4 cut(s) 176, 178, 514, 544
AspS9I GGNCC 2 cut(s) 209, 986
AsuC2I CCSGG 1 cut(s) 568
AsuHPI GGTGA 1 cut(s) 760
AvaII GGWCC 2 cut(s) 209, 986
BalI TGGCCA 2 cut(s) 899, 936
BanI GGYRCC 1 cut(s) 511
BbvCI CCTCAGC 2 cut(s) 201, 1058
BbvI GCAGC 5 cut(s) 47, 55, 472, 590, 876
BccI CCATC 6 cut(s) 107, 200, 230, 410, 518, 915
BceAI ACGGC 3 cut(s) 213, 438, 771
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 990
BcnI CCSGG 1 cut(s) 568
BfaI CTAG 2 cut(s) 72, 731
BfmI CTRYAG 2 cut(s) 33, 445
BfoI RGCGCY 1 cut(s) 515
BglII AGATCT 1 cut(s) 561
BisI GCNGC 7 cut(s) 36, 69, 84, 186, 486, 579, 865
BlpI GCTNAGC 1 cut(s) 1031
BlsI GCNGC 7 cut(s) 37, 70, 85, 187, 487, 580, 866
Bme1390I CCNGG 2 cut(s) 568, 990
Bme18I GGWCC 2 cut(s) 209, 986
BmgT120I GGNCC 2 cut(s) 209, 986
BmiI GGNNCC 4 cut(s) 118, 513, 987, 1081
BmrFI CCNGG 2 cut(s) 568, 990
BmsI GCATC 2 cut(s) 288, 760
Bpu10I CCTNAGC 2 cut(s) 201, 1058
Bpu1102I GCTNAGC 1 cut(s) 1031
BpuMI CCSGG 1 cut(s) 568
BsaHI GRCGYC 3 cut(s) 183, 267, 512
BsaJI CCNNGG 3 cut(s) 567, 989, 1063
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 113, 196, 874
Bse1I ACTGG 1 cut(s) 820
Bse3DI GCAATG 2 cut(s) 554, 802
BseBI CCWGG 1 cut(s) 990
BseDI CCNNGG 3 cut(s) 567, 989, 1063
BseGI GGATG 5 cut(s) 211, 279, 529, 775, 910
BseLI CCNNNNNNNGG 4 cut(s) 38, 113, 196, 874
BseMI GCAATG 2 cut(s) 554, 802
BseMII CTCAG 5 cut(s) 192, 276, 417, 708, 1072
BseNI ACTGG 1 cut(s) 820
BsePI GCGCGC 1 cut(s) 174
BseRI GAGGAG 2 cut(s) 53, 847
BseXI GCAGC 5 cut(s) 47, 55, 472, 590, 876
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 2 cut(s) 899, 936
BshNI GGYRCC 1 cut(s) 511
BsiSI CCGG 2 cut(s) 521, 567
BslFI GGGAC 2 cut(s) 451, 584
BslI CCNNNNNNNGG 4 cut(s) 38, 113, 196, 874
BsmFI GGGAC 2 cut(s) 451, 584
BsnI GGCC 2 cut(s) 899, 936
Bsp1407I TGTACA 2 cut(s) 312, 330
Bsp143I GATC 3 cut(s) 383, 561, 1112
Bsp1720I GCTNAGC 1 cut(s) 1031
BspACI CCGC 5 cut(s) 81, 84, 186, 736, 1005
BspANI GGCC 2 cut(s) 899, 936
BspCNI CTCAG 5 cut(s) 193, 277, 418, 709, 1071
BspFNI CGCG 1 cut(s) 176
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 118, 513, 987, 1081
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 2 cut(s) 391, 1107
BspT107I GGYRCC 1 cut(s) 511
BsrBI CCGCTC 1 cut(s) 736
BsrDI GCAATG 2 cut(s) 554, 802
BsrGI TGTACA 2 cut(s) 312, 330
BsrI ACTGG 1 cut(s) 820
BssECI CCNNGG 3 cut(s) 567, 989, 1063
BssHII GCGCGC 1 cut(s) 174
BssMI GATC 3 cut(s) 383, 561, 1112
BssNI GRCGYC 3 cut(s) 183, 267, 512
BssT1I CCWWGG 1 cut(s) 1063
Bst2UI CCWGG 1 cut(s) 990
Bst4CI ACNGT 5 cut(s) 442, 449, 673, 748, 874
BstACI GRCGYC 3 cut(s) 183, 267, 512
BstAUI TGTACA 2 cut(s) 312, 330
BstC8I GCNNGC 7 cut(s) 33, 176, 546, 638, 1007, 1011, 1015
BstDEI CTNAG 6 cut(s) 201, 285, 426, 717, 1031, 1058
BstF5I GGATG 5 cut(s) 211, 279, 529, 775, 910
BstFNI CGCG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 4 cut(s) 176, 178, 514, 544
BstKTI GATC 3 cut(s) 386, 564, 1115
BstMBI GATC 3 cut(s) 383, 561, 1112
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 990
BstNSI RCATGY 2 cut(s) 21, 728
BstSCI CCNGG 2 cut(s) 566, 988
BstSFI CTRYAG 2 cut(s) 33, 445
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 5 cut(s) 47, 55, 472, 590, 876
BstX2I RGATCY 2 cut(s) 561, 1112
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 2 cut(s) 561, 1112
BsuRI GGCC 2 cut(s) 899, 936
BtgZI GCGATG 1 cut(s) 1050
BtsCI GGATG 5 cut(s) 211, 279, 529, 775, 910
BtsIMutI CAGTG 3 cut(s) 454, 714, 870
Cac8I GCNNGC 7 cut(s) 33, 176, 546, 638, 1007, 1011, 1015
CciI TCATGA 1 cut(s) 228
CfoI GCGC 4 cut(s) 176, 178, 514, 544
Cfr13I GGNCC 2 cut(s) 209, 986
CseI GACGC 2 cut(s) 191, 275
Csp6I GTAC 6 cut(s) 75, 313, 331, 420, 453, 837
CviAII CATG 6 cut(s) 18, 22, 28, 229, 725, 895
CviQI GTAC 6 cut(s) 75, 313, 331, 420, 453, 837
DdeI CTNAG 6 cut(s) 201, 285, 426, 717, 1031, 1058
DinI GGCGCC 1 cut(s) 513
DpnI GATC 3 cut(s) 385, 563, 1114
DpnII GATC 3 cut(s) 383, 561, 1112
EaeI YGGCCR 2 cut(s) 897, 934
Eco130I CCWWGG 1 cut(s) 1063
Eco47I GGWCC 2 cut(s) 209, 986
EcoRI GAATTC 2 cut(s) 505, 979
EcoRII CCWGG 1 cut(s) 988
EcoT14I CCWWGG 1 cut(s) 1063
EcoT22I ATGCAT 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 513
EheI GGCGCC 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 1063
FaeI CATG 6 cut(s) 21, 25, 31, 232, 728, 898
FalI AAGNNNNNCTT 4 cut(s) 566, 598, 757, 789
FaqI GGGAC 2 cut(s) 451, 584
FatI CATG 6 cut(s) 17, 21, 27, 228, 724, 894
FauI CCCGC 1 cut(s) 998
FauNDI CATATG 1 cut(s) 826
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 7 cut(s) 36, 69, 84, 186, 486, 579, 865
FokI GGATG 5 cut(s) 218, 266, 536, 782, 897
Fsp4HI GCNGC 7 cut(s) 36, 69, 84, 186, 486, 579, 865
FspBI CTAG 2 cut(s) 72, 731
FspI TGCGCA 1 cut(s) 543
GlaI GCGC 4 cut(s) 175, 177, 513, 543
GluI GCNGC 7 cut(s) 36, 69, 84, 186, 486, 579, 865
GsaI CCCAGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 515
HaeIII GGCC 2 cut(s) 899, 936
HapII CCGG 2 cut(s) 521, 567
HgaI GACGC 2 cut(s) 191, 275
HhaI GCGC 4 cut(s) 176, 178, 514, 544
Hin1I GRCGYC 3 cut(s) 183, 267, 512
Hin1II CATG 6 cut(s) 21, 25, 31, 232, 728, 898
Hin6I GCGC 4 cut(s) 174, 176, 512, 542
HinP1I GCGC 4 cut(s) 174, 176, 512, 542
HinfI GANTC 2 cut(s) 92, 467
HpaII CCGG 2 cut(s) 521, 567
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 3 cut(s) 313, 331, 445
Hpy188I TCNGA 5 cut(s) 112, 320, 472, 689, 978
Hpy188III TCNNGA 4 cut(s) 229, 611, 914, 1116
Hpy8I GTNNAC 3 cut(s) 313, 331, 445
Hpy99I CGWCG 2 cut(s) 92, 908
HpyAV CCTTC 4 cut(s) 117, 592, 659, 1063
HpyCH4III ACNGT 5 cut(s) 442, 449, 673, 748, 874
HpyCH4IV ACGT 4 cut(s) 147, 374, 903, 946
HpyCH4V TGCA 8 cut(s) 21, 35, 554, 559, 594, 640, 802, 807
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 6 cut(s) 201, 285, 426, 717, 1031, 1058
HpySE526I ACGT 4 cut(s) 147, 374, 903, 946
Hsp92I GRCGYC 3 cut(s) 183, 267, 512
Hsp92II CATG 6 cut(s) 21, 25, 31, 232, 728, 898
HspAI GCGC 4 cut(s) 174, 176, 512, 542
KasI GGCGCC 1 cut(s) 511
Kzo9I GATC 3 cut(s) 383, 561, 1112
LmnI GCTCC 1 cut(s) 861
Lsp1109I GCAGC 5 cut(s) 47, 55, 472, 590, 876
LweI GCATC 2 cut(s) 288, 760
MaeI CTAG 2 cut(s) 72, 731
MaeII ACGT 4 cut(s) 147, 374, 903, 946
MaeIII GTNAC 4 cut(s) 193, 370, 499, 656
MalI GATC 3 cut(s) 385, 563, 1114
MbiI CCGCTC 1 cut(s) 736
MboI GATC 3 cut(s) 383, 561, 1112
MboII GAAGA 4 cut(s) 21, 637, 676, 1085
MfeI CAATTG 1 cut(s) 589
MflI RGATCY 2 cut(s) 561, 1112
MlsI TGGCCA 2 cut(s) 899, 936
MluCI AATT 5 cut(s) 48, 57, 505, 589, 979
MluNI TGGCCA 2 cut(s) 899, 936
Mly113I GGCGCC 1 cut(s) 512
MmeI TCCRAC 1 cut(s) 975
MnlI CCTC 9 cut(s) 74, 196, 269, 282, 314, 772, 825, 1067, 1107
Mox20I TGGCCA 2 cut(s) 899, 936
Mph1103I ATGCAT 1 cut(s) 23
MscI TGGCCA 2 cut(s) 899, 936
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 3 cut(s) 26, 875, 893
Msp20I TGGCCA 2 cut(s) 899, 936
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 2 cut(s) 521, 567
MspR9I CCNGG 2 cut(s) 568, 990
MunI CAATTG 1 cut(s) 589
MvaI CCWGG 1 cut(s) 990
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 182
NarI GGCGCC 1 cut(s) 512
NciI CCSGG 1 cut(s) 568
NdeI CATATG 1 cut(s) 826
NdeII GATC 3 cut(s) 383, 561, 1112
NlaIII CATG 6 cut(s) 21, 25, 31, 232, 728, 898
NlaIV GGNNCC 4 cut(s) 118, 513, 987, 1081
NmuCI GTSAC 2 cut(s) 193, 370
NsbI TGCGCA 1 cut(s) 543
NsiI ATGCAT 1 cut(s) 23
NspI RCATGY 2 cut(s) 21, 728
OliI CACNNNNGTG 1 cut(s) 875
PagI TCATGA 1 cut(s) 228
PauI GCGCGC 1 cut(s) 174
PciI ACATGT 1 cut(s) 724
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 2 cut(s) 92, 467
PkrI GCNGC 7 cut(s) 37, 70, 85, 187, 487, 580, 866
PluTI GGCGCC 1 cut(s) 515
PscI ACATGT 1 cut(s) 724
PshBI ATTAAT 1 cut(s) 273
PsiI TTATAA 1 cut(s) 53
Psp1406I AACGTT 1 cut(s) 946
Psp6I CCWGG 1 cut(s) 988
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 988
PspN4I GGNNCC 4 cut(s) 118, 513, 987, 1081
PspPI GGNCC 2 cut(s) 209, 986
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 2 cut(s) 561, 1112
PteI GCGCGC 1 cut(s) 174
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 6 cut(s) 76, 314, 332, 421, 454, 838
RsaNI GTAC 6 cut(s) 75, 313, 331, 420, 453, 837
RseI CAYNNNNRTG 3 cut(s) 26, 875, 893
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 7 cut(s) 36, 69, 84, 186, 486, 579, 865
Sau3AI GATC 3 cut(s) 383, 561, 1112
Sau96I GGNCC 2 cut(s) 209, 986
ScrFI CCNGG 2 cut(s) 568, 990
SfaNI GCATC 2 cut(s) 288, 760
SfcI CTRYAG 2 cut(s) 33, 445
SfoI GGCGCC 1 cut(s) 513
SinI GGWCC 2 cut(s) 209, 986
SmiMI CAYNNNNRTG 3 cut(s) 26, 875, 893
Sse9I AATT 5 cut(s) 48, 57, 505, 589, 979
SsiI CCGC 5 cut(s) 81, 84, 186, 736, 1005
SspDI GGCGCC 1 cut(s) 511
SspI AATATT 1 cut(s) 742
SspMI CTAG 2 cut(s) 72, 731
StyD4I CCNGG 2 cut(s) 566, 988
StyI CCWWGG 1 cut(s) 1063
TaaI ACNGT 5 cut(s) 442, 449, 673, 748, 874
TaiI ACGT 4 cut(s) 150, 377, 906, 949
TaqI TCGA 2 cut(s) 95, 138
TasI AATT 5 cut(s) 48, 57, 505, 589, 979
TatI WGTACW 3 cut(s) 312, 330, 836
TauI GCSGC 2 cut(s) 86, 188
TfiI GAWTC 2 cut(s) 92, 467
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 3 cut(s) 454, 721, 877
TseFI GTSAC 2 cut(s) 193, 370
TseI GCWGC 5 cut(s) 35, 68, 485, 578, 864
Tsp45I GTSAC 2 cut(s) 193, 370
TspDTI ATGAA 4 cut(s) 245, 670, 783, 899
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 3 cut(s) 454, 721, 877
VpaK11BI GGWCC 2 cut(s) 209, 986
VspI ATTAAT 1 cut(s) 273
XapI RAATTY 2 cut(s) 505, 979
XceI RCATGY 2 cut(s) 21, 728
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 2 cut(s) 72, 731
Zsp2I ATGCAT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.