Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Forward (+)

6117816 .. 6119258

Gene Structure 1443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCGGAAGAAAGAAATGGATGGGCATCCATGCAGCTCTCATGATGATCACGACGATTCTCCTTGCTGCTACTGTTTCCATGGCTGTTGGTGATGCAGTCGTACCAGCCGAAAAATCCGAACTGGACAAGTGGTTCAACAACAATGTGAAGCCGTTCAAAGAACAAAAGTCGCTTGACGCTGCCCTTGTTACTGCGGAGGATGGTGCGAAAGTTGTGAAGGTCATGCAAGATGGGGGAGACTACAAGAAAATCATGGAGGCGATTGATAGCATTCCGGCCGGGAACACTAAACGTCTGATTGACACCATTTGTGATGATAAAGGCTATCATTTCTTCAAGGACTGCTACGTTGAAGGAACTGTAGATTTCATCTTTGGAAGTGGAAAATCTCTCTATTTGAGAACACATTTACATGTTTTAGGGGACACAGGAATGACGGTGATAACCGCACAGGCAAGGGACAGTAAAGAGGACACCGGATACTCATTTGTTCACTGCAATATAACCGGGACCGCCAAGGGCACATTTTTGGGCAGAGCTTGGAGGGCTAGTCCGAAGGTGGTGTATGCCTACACCGCCATGGGAGAAGTTGTCAGTCCAGAAGGATGGACCGACAATCGCCACCCCGAATACGACAACTCTGTTAATTTTGGAGAGTACAAGTGTATTGGTCCAGGTTCAAGCATGAGTAAGAGAGTGAAATTCACAAAAGAGCTGAGCGAGGCAGATGCCAAACCTTACATCAGCCTGAGCTTTATCGAGGGTTCCAAGTGGTTGCTTCCTCCTCCAAATCCGAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

268

Amino Acids

29.47

Weight (kDa)

7.65

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	108 - 256	2.7e-27	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	197, 450, 516, 579
AcoI	YGGCCR	2 cut(s)	3, 279
AcsI	RAATTY	1 cut(s)	704
AfaI	GTAC	2 cut(s)	105, 662
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	5 cut(s)	139, 160, 340, 356, 684
AjnI	CCWGG	1 cut(s)	676
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	4 cut(s)	38, 542, 718, 756
AluI	AGCT	4 cut(s)	38, 542, 718, 756
Alw26I	GTCTC	1 cut(s)	234
AoxI	GGCC	2 cut(s)	3, 279
ApeKI	GCWGC	3 cut(s)	35, 68, 182
ApoI	RAATTY	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	513, 612, 674
AsuC2I	CCSGG	2 cut(s)	283, 511
AsuHPI	GGTGA	2 cut(s)	104, 454
AvaII	GGWCC	3 cut(s)	513, 612, 674
BaeGI	GKGCMC	1 cut(s)	527
BbvI	GCAGC	3 cut(s)	47, 55, 169
BccI	CCATC	4 cut(s)	16, 197, 227, 603
BceAI	ACGGC	1 cut(s)	139
BcgI	CGANNNNNNTGC	2 cut(s)	713, 747
BciT130I	CCWGG	1 cut(s)	678
BciVI	GTATCC	1 cut(s)	476
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	2 cut(s)	283, 511
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	363
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	3 cut(s)	36, 69, 183
BlpI	GCTNAGC	1 cut(s)	719
BlsI	GCNGC	3 cut(s)	37, 70, 184
Bme1390I	CCNGG	3 cut(s)	283, 511, 678
Bme18I	GGWCC	3 cut(s)	513, 612, 674
BmgT120I	GGNCC	3 cut(s)	513, 612, 674
BmiI	GGNNCC	2 cut(s)	514, 769
BmrFI	CCNGG	3 cut(s)	283, 511, 678
BmsI	GCATC	3 cut(s)	36, 85, 721
Bpu10I	CCTNAGC	1 cut(s)	752
Bpu1102I	GCTNAGC	1 cut(s)	719
BpuMI	CCSGG	2 cut(s)	283, 511
BsaBI	GATNNNNATC	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	81, 519, 582
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	4 cut(s)	538, 568, 579, 609
Bse1I	ACTGG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	3 cut(s)	81, 519, 582
BseGI	GGATG	4 cut(s)	27, 27, 208, 614
BseJI	GATNNNNATC	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	710, 743
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	777
BseSI	GKGCMC	1 cut(s)	527
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	47, 55, 169
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	5, 281
BsiEI	CGRYCG	1 cut(s)	282
BsiSI	CCGG	5 cut(s)	6, 278, 282, 480, 510
BslFI	GGGAC	3 cut(s)	440, 476, 526
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	3 cut(s)	440, 476, 526
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	5, 281
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	1 cut(s)	48
Bsp1720I	GCTNAGC	1 cut(s)	719
Bsp19I	CCATGG	2 cut(s)	81, 582
BspACI	CCGC	4 cut(s)	197, 450, 516, 579
BspANI	GGCC	2 cut(s)	5, 281
BspCNI	CTCAG	2 cut(s)	711, 744
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	514, 769
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	3 cut(s)	81, 519, 582
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	3 cut(s)	81, 519, 582
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	4 cut(s)	76, 364, 442, 467
BstDEI	CTNAG	2 cut(s)	719, 752
BstDSI	CCRYGG	2 cut(s)	81, 582
BstF5I	GGATG	4 cut(s)	27, 27, 208, 614
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	48
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	2 cut(s)	548, 578
BstNI	CCWGG	1 cut(s)	678
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	3 cut(s)	281, 509, 676
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	527
BstV1I	GCAGC	3 cut(s)	47, 55, 169
BstXI	CCANNNNNNTGG	1 cut(s)	609
BstZI	CGGCCG	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	5, 281
BtgI	CCRYGG	2 cut(s)	81, 582
BtsCI	GGATG	4 cut(s)	27, 27, 208, 614
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	496
CciI	TCATGA	1 cut(s)	42
Cfr13I	GGNCC	3 cut(s)	513, 612, 674
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	104, 661
CviAII	CATG	8 cut(s)	32, 43, 82, 226, 256, 416, 583, 688
CviQI	GTAC	2 cut(s)	104, 661
DdeI	CTNAG	2 cut(s)	719, 752
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	2 cut(s)	3, 279
EagI	CGGCCG	1 cut(s)	279
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	3 cut(s)	81, 519, 582
Eco47I	GGWCC	3 cut(s)	513, 612, 674
Eco52I	CGGCCG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	676
EcoT14I	CCWWGG	3 cut(s)	81, 519, 582
ErhI	CCWWGG	3 cut(s)	81, 519, 582
FaeI	CATG	8 cut(s)	35, 46, 85, 229, 259, 419, 586, 691
FaqI	GGGAC	3 cut(s)	440, 476, 526
FatI	CATG	8 cut(s)	31, 42, 81, 225, 255, 415, 582, 687
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	36, 69, 183
FokI	GGATG	4 cut(s)	14, 34, 215, 621
Fsp4HI	GCNGC	3 cut(s)	36, 69, 183
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	3 cut(s)	36, 69, 183
HaeIII	GGCC	2 cut(s)	5, 281
HapII	CCGG	5 cut(s)	6, 278, 282, 480, 510
HgaI	GACGC	1 cut(s)	188
Hin1II	CATG	8 cut(s)	35, 46, 85, 229, 259, 419, 586, 691
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	5 cut(s)	6, 278, 282, 480, 510
HphI	GGTGA	2 cut(s)	104, 454
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	4 cut(s)	121, 300, 558, 798
Hpy188III	TCNNGA	3 cut(s)	43, 52, 602
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	5 cut(s)	214, 350, 553, 599, 793
HpyCH4III	ACNGT	4 cut(s)	76, 364, 442, 467
HpyCH4IV	ACGT	2 cut(s)	295, 351
HpyCH4V	TGCA	4 cut(s)	35, 98, 229, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	548, 578
HpyF3I	CTNAG	2 cut(s)	719, 752
HpySE526I	ACGT	2 cut(s)	295, 351
Hsp92II	CATG	8 cut(s)	35, 46, 85, 229, 259, 419, 586, 691
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	48
Lsp1109I	GCAGC	3 cut(s)	47, 55, 169
LweI	GCATC	3 cut(s)	36, 85, 721
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	2 cut(s)	295, 351
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	21, 328
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	2 cut(s)	649, 704
MnlI	CCTC	8 cut(s)	193, 253, 466, 540, 718, 757, 795, 798
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	3 cut(s)	414, 434, 581
MspI	CCGG	5 cut(s)	6, 278, 282, 480, 510
MspR9I	CCNGG	3 cut(s)	283, 511, 678
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	2 cut(s)	548, 578
NciI	CCSGG	2 cut(s)	283, 511
NcoI	CCATGG	2 cut(s)	81, 582
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	8 cut(s)	35, 46, 85, 229, 259, 419, 586, 691
NlaIV	GGNNCC	2 cut(s)	514, 769
NspI	RCATGY	1 cut(s)	419
PagI	TCATGA	1 cut(s)	42
PciI	ACATGT	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	37, 70, 184
PscI	ACATGT	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	2 cut(s)	514, 769
PspPI	GGNCC	3 cut(s)	513, 612, 674
RsaI	GTAC	2 cut(s)	105, 662
RsaNI	GTAC	2 cut(s)	104, 661
RseI	CAYNNNNRTG	3 cut(s)	414, 434, 581
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	3 cut(s)	36, 69, 183
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	3 cut(s)	513, 612, 674
ScrFI	CCNGG	3 cut(s)	283, 511, 678
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	3 cut(s)	36, 85, 721
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	3 cut(s)	513, 612, 674
SmiMI	CAYNNNNRTG	3 cut(s)	414, 434, 581
Sse9I	AATT	2 cut(s)	649, 704
SsiI	CCGC	4 cut(s)	197, 450, 516, 579
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	281, 509, 676
StyI	CCWWGG	3 cut(s)	81, 519, 582
TaaI	ACNGT	4 cut(s)	76, 364, 442, 467
TaiI	ACGT	2 cut(s)	298, 354
TaqI	TCGA	1 cut(s)	762
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	2 cut(s)	649, 704
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	1 cut(s)	503
TseI	GCWGC	3 cut(s)	35, 68, 182
TspDTI	ATGAA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	503
VpaK11BI	GGWCC	3 cut(s)	513, 612, 674
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.