Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

27370928 .. 27372185

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G268200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCTGGAAAAATGATGCATGCAGCCGGGTTTATAATTATAACAATTCTCCTCGCTGGTAGTACCCCCGCCGTTGCCAACGATTCGACACCAATACCTGCCGATGGTTCCCAAGTCGGCAGCTGGTTCGATAACAACGTGAAGCCGTTAACAGAACGCAAGGGCACGCTTGATGCCGCCATTGTGACGGCTGAGGATGGGCCAAAACTCATCAAGGTCATGAAAGATGGAAGTGGAAACTTCAAAACCCTCACGGAGGCCATTAACAGCATCCCTGAGAGGAACACCAAGCGTGTGGTTGTGTACATTGGAGGTGGAGTGTACAACGAGAAAATCAAAATTCCACAAAATAAACCATTTGTAACGTTGTATGGATCGCCAAACAATATGCCAAACTTGACATTTGATGGCACGGCTCAGAAGTATGGGACTGTCTATAGTGGCACATTGATTGTGGAATCTGACTATTTTAGGGCTGCTAACATTATCGTCACGCCAGATGGGATAAGGCCGGATGCGCAGGCAGTTGCATTGCAGATCTCCGGGGACAAGGCATCCTTCTACAATTGCAAATTTTTTGGATTTCAGGACACTCTTTATGATTACAAGGGCTTGCATTTCTTCAAGGACTGCTACATTCAAGGCACCGTAGATTTCATCTTTGGAAAAGGAAAATCTCTCTACTTGAGTGCTTCGGAGGATAATGAATTTTCATTTGTGCACTGCAAAATAACTGGCACTACATATGTGAGGGGTACATACTTGGGCAGGGCTTGGGGGAGCAGCCCCACCGTGGTGTTTGCCTACACCGACATGGCTGACGTTGTCCATCCGGAACGATGGAGTGACTTTGGCCACCCTGAACGTTCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

292

Amino Acids

31.87

Weight (kDa)

6.96

Isoelectric Point (pI)

25.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	35, 41
Acc16I	TGCGCA	1 cut(s)	519
Acc36I	ACCTGC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	644
AccIII	TCCGGA	1 cut(s)	832
AciI	CCGC	2 cut(s)	69, 177
AclI	AACGTT	2 cut(s)	365, 865
AclWI	GGATC	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	853
AcsI	RAATTY	3 cut(s)	339, 572, 707
AfaI	GTAC	4 cut(s)	64, 305, 323, 757
AfiI	CCNNNNNNNGG	3 cut(s)	104, 256, 793
AgsI	TTSAA	3 cut(s)	244, 625, 641
AleI	CACNNNNGTG	1 cut(s)	794
AluBI	AGCT	1 cut(s)	123
AluI	AGCT	1 cut(s)	123
Alw21I	GWGCWC	1 cut(s)	723
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	1 cut(s)	382
Aor13HI	TCCGGA	1 cut(s)	832
AoxI	GGCC	4 cut(s)	200, 258, 509, 853
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	4 cut(s)	23, 120, 476, 783
ApoI	RAATTY	3 cut(s)	339, 572, 707
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	2 cut(s)	28, 544
BaeGI	GKGCMC	2 cut(s)	167, 723
BalI	TGGCCA	1 cut(s)	855
BanI	GGYRCC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	723
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	35, 132, 463, 795
BccI	CCATC	7 cut(s)	98, 191, 221, 401, 494, 834, 837
BceAI	ACGGC	4 cut(s)	56, 130, 204, 429
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BcnI	CCSGG	2 cut(s)	28, 544
BfmI	CTRYAG	1 cut(s)	436
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	537
BisI	GCNGC	5 cut(s)	24, 121, 177, 477, 784
BlsI	GCNGC	5 cut(s)	25, 122, 178, 478, 785
Bme1390I	CCNGG	2 cut(s)	28, 544
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	109, 646
BmrFI	CCNGG	2 cut(s)	28, 544
BmsI	GCATC	5 cut(s)	6, 163, 279, 505, 563
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	706
BpuMI	CCSGG	2 cut(s)	28, 544
BsaJI	CCNNGG	2 cut(s)	543, 792
BsaWI	WCCGGW	1 cut(s)	832
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 256, 793
Bse1I	ACTGG	1 cut(s)	739
Bse3DI	GCAATG	1 cut(s)	530
BseAI	TCCGGA	1 cut(s)	832
BseDI	CCNNGG	2 cut(s)	543, 792
BseGI	GGATG	5 cut(s)	202, 270, 520, 554, 829
BseLI	CCNNNNNNNGG	3 cut(s)	104, 256, 793
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	3 cut(s)	183, 267, 431
BseNI	ACTGG	1 cut(s)	739
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	2 cut(s)	167, 723
BseXI	GCAGC	4 cut(s)	35, 132, 463, 795
BshFI	GGCC	4 cut(s)	202, 260, 511, 855
BshNI	GGYRCC	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	4 cut(s)	27, 512, 543, 833
BslFI	GGGAC	2 cut(s)	442, 560
BslI	CCNNNNNNNGG	3 cut(s)	104, 256, 793
BsmFI	GGGAC	2 cut(s)	442, 560
BsnI	GGCC	4 cut(s)	202, 260, 511, 855
Bsp1286I	GDGCHC	2 cut(s)	167, 723
Bsp13I	TCCGGA	1 cut(s)	832
Bsp1407I	TGTACA	2 cut(s)	303, 321
Bsp143I	GATC	2 cut(s)	374, 537
BspACI	CCGC	2 cut(s)	69, 177
BspANI	GGCC	4 cut(s)	202, 260, 511, 855
BspCNI	CTCAG	3 cut(s)	184, 268, 430
BspEI	TCCGGA	1 cut(s)	832
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	109, 646
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	530
BsrGI	TGTACA	2 cut(s)	303, 321
BsrI	ACTGG	1 cut(s)	739
BssECI	CCNNGG	2 cut(s)	543, 792
BssMI	GATC	2 cut(s)	374, 537
Bst4CI	ACNGT	3 cut(s)	433, 649, 793
BstAUI	TGTACA	2 cut(s)	303, 321
BstC8I	GCNNGC	4 cut(s)	21, 167, 522, 614
BstDEI	CTNAG	4 cut(s)	192, 276, 417, 870
BstDSI	CCRYGG	1 cut(s)	792
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	5 cut(s)	202, 270, 520, 554, 829
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	2 cut(s)	377, 540
BstMBI	GATC	2 cut(s)	374, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	26, 542
BstSFI	CTRYAG	1 cut(s)	436
BstSLI	GKGCMC	2 cut(s)	167, 723
BstV1I	GCAGC	4 cut(s)	35, 132, 463, 795
BstX2I	RGATCY	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	537
BsuRI	GGCC	4 cut(s)	202, 260, 511, 855
BtgI	CCRYGG	1 cut(s)	792
BtsCI	GGATG	5 cut(s)	202, 270, 520, 554, 829
BtsI	GCAGTG	1 cut(s)	721
BtsIMutI	CAGTG	1 cut(s)	721
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	4 cut(s)	21, 167, 522, 614
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	4 cut(s)	63, 304, 322, 756
CviAII	CATG	3 cut(s)	20, 220, 814
CviQI	GTAC	4 cut(s)	63, 304, 322, 756
DdeI	CTNAG	4 cut(s)	192, 276, 417, 870
DpnI	GATC	2 cut(s)	376, 539
DpnII	GATC	2 cut(s)	374, 537
EaeI	YGGCCR	1 cut(s)	853
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	21
FaeI	CATG	3 cut(s)	23, 223, 817
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	2 cut(s)	442, 560
FatI	CATG	3 cut(s)	19, 219, 813
FauI	CCCGC	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	745
Fnu4HI	GCNGC	5 cut(s)	24, 121, 177, 477, 784
FokI	GGATG	5 cut(s)	209, 257, 527, 541, 816
Fsp4HI	GCNGC	5 cut(s)	24, 121, 177, 477, 784
FspI	TGCGCA	1 cut(s)	519
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	5 cut(s)	24, 121, 177, 477, 784
HaeIII	GGCC	4 cut(s)	202, 260, 511, 855
HapII	CCGG	4 cut(s)	27, 512, 543, 833
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	3 cut(s)	23, 223, 817
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	83, 458
HpaI	GTTAAC	1 cut(s)	150
HpaII	CCGG	4 cut(s)	27, 512, 543, 833
Hpy166II	GTNNAC	4 cut(s)	150, 304, 322, 721
Hpy188I	TCNGA	3 cut(s)	420, 463, 697
Hpy188III	TCNNGA	3 cut(s)	220, 587, 833
Hpy8I	GTNNAC	4 cut(s)	150, 304, 322, 721
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	3 cut(s)	433, 649, 793
HpyCH4IV	ACGT	4 cut(s)	138, 365, 822, 865
HpyCH4V	TGCA	8 cut(s)	19, 23, 530, 535, 570, 616, 721, 726
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	4 cut(s)	192, 276, 417, 870
HpySE526I	ACGT	4 cut(s)	138, 365, 822, 865
Hsp92II	CATG	3 cut(s)	23, 223, 817
HspAI	GCGC	1 cut(s)	518
Kpn2I	TCCGGA	1 cut(s)	832
KspAI	GTTAAC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	374, 537
LmnI	GCTCC	1 cut(s)	780
Lsp1109I	GCAGC	4 cut(s)	35, 132, 463, 795
LweI	GCATC	5 cut(s)	6, 163, 279, 505, 563
MaeII	ACGT	4 cut(s)	138, 365, 822, 865
MaeIII	GTNAC	4 cut(s)	184, 361, 490, 845
MalI	GATC	2 cut(s)	376, 539
MboI	GATC	2 cut(s)	374, 537
MboII	GAAGA	1 cut(s)	613
MfeI	CAATTG	1 cut(s)	565
MflI	RGATCY	1 cut(s)	537
MhlI	GDGCHC	2 cut(s)	167, 723
MlsI	TGGCCA	1 cut(s)	855
MluCI	AATT	6 cut(s)	36, 45, 339, 565, 572, 707
MluNI	TGGCCA	1 cut(s)	855
MnlI	CCTC	8 cut(s)	62, 187, 250, 260, 273, 305, 691, 744
Mox20I	TGGCCA	1 cut(s)	855
Mph1103I	ATGCAT	1 cut(s)	21
MroI	TCCGGA	1 cut(s)	832
MscI	TGGCCA	1 cut(s)	855
MseI	TTAA	2 cut(s)	149, 264
MslI	CAYNNNNRTG	2 cut(s)	794, 812
Msp20I	TGGCCA	1 cut(s)	855
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	4 cut(s)	27, 512, 543, 833
MspR9I	CCNGG	2 cut(s)	28, 544
MunI	CAATTG	1 cut(s)	565
MwoI	GCNNNNNNNGC	1 cut(s)	517
NciI	CCSGG	2 cut(s)	28, 544
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	2 cut(s)	374, 537
NlaIII	CATG	3 cut(s)	23, 223, 817
NlaIV	GGNNCC	2 cut(s)	109, 646
NmuCI	GTSAC	3 cut(s)	184, 490, 845
NsbI	TGCGCA	1 cut(s)	519
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	1 cut(s)	23
OliI	CACNNNNGTG	1 cut(s)	794
PaeI	GCATGC	1 cut(s)	23
PagI	TCATGA	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	83, 458
PflFI	GACNNNGTC	1 cut(s)	824
PkrI	GCNGC	5 cut(s)	25, 122, 178, 478, 785
PsiI	TTATAA	2 cut(s)	35, 41
Psp1406I	AACGTT	2 cut(s)	365, 865
PspN4I	GGNNCC	2 cut(s)	109, 646
PspPI	GGNCC	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	537
PsyI	GACNNNGTC	1 cut(s)	824
PvuII	CAGCTG	1 cut(s)	123
RsaI	GTAC	4 cut(s)	64, 305, 323, 757
RsaNI	GTAC	4 cut(s)	63, 304, 322, 756
RseI	CAYNNNNRTG	2 cut(s)	794, 812
SaqAI	TTAA	2 cut(s)	149, 264
SatI	GCNGC	5 cut(s)	24, 121, 177, 477, 784
Sau3AI	GATC	2 cut(s)	374, 537
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	28, 544
SduI	GDGCHC	2 cut(s)	167, 723
SetI	ASST	8 cut(s)	100, 125, 141, 219, 316, 368, 825, 868
SfaNI	GCATC	5 cut(s)	6, 163, 279, 505, 563
SfcI	CTRYAG	1 cut(s)	436
SmiMI	CAYNNNNRTG	2 cut(s)	794, 812
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	6 cut(s)	36, 45, 339, 565, 572, 707
SsiI	CCGC	2 cut(s)	69, 177
StyD4I	CCNGG	2 cut(s)	26, 542
TaaI	ACNGT	3 cut(s)	433, 649, 793
TaiI	ACGT	4 cut(s)	141, 368, 825, 868
TaqI	TCGA	2 cut(s)	86, 129
TasI	AATT	6 cut(s)	36, 45, 339, 565, 572, 707
TatI	WGTACW	2 cut(s)	303, 321
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	83, 458
Tru1I	TTAA	2 cut(s)	149, 264
Tru9I	TTAA	2 cut(s)	149, 264
TscAI	CASTG	1 cut(s)	728
TseFI	GTSAC	3 cut(s)	184, 490, 845
TseI	GCWGC	4 cut(s)	23, 120, 476, 783
Tsp45I	GTSAC	3 cut(s)	184, 490, 845
TspDTI	ATGAA	4 cut(s)	236, 646, 702, 720
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	728
Tth111I	GACNNNGTC	1 cut(s)	824
VneI	GTGCAC	1 cut(s)	719
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	3 cut(s)	339, 572, 707
XceI	RCATGY	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.