Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000425.1

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Forward (+)

73717 .. 75146

Gene Structure 1430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000425.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggtcataagagagaaatggttggccatccatgcagctctgatgatgatcacgacgattctccttgctgataccgtttccatggcagatgatgcagtcataccagctgaaaaatccggactggccaagtggttcaaagacaatgtgaagccgttggcagaacagaagtcctcgcttgaccctgcccttgtcaaggcggaggagggtgatgccaaagttgtgaaggtcaagcaaaatgggggagactacaagaaaatctcggaggccattgatagcattccggccgggaacactaaacgtgtaattatatacattggagggggggacaacggaatgacggtgataaccgcacaggcaagggaaagtgatgaggacaacggatactcatttgttcactgcaacataaccgggaccggcaatggcacatatttgggcagggcttggagagctgctcccaaggtgttgtttgcctacaccaacatgggagaagttgtcaagccagaaggatggaccgacaatttccaccccgaatacgacaacaaagttcaatttggagagtacaagaatactggtccaggttcaagcatgagtaaaagagtgaaattcacaaaagagctgagcgatgtagacgccaaacctttcatcagcctaggctttattgagggttccaaatggttgcttcctcctcctaatccaaaggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

234

Amino Acids

25.55

Weight (kDa)

6.85

Isoelectric Point (pI)

24.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	627
AccIII	TCCGGA	1 cut(s)	116
AciI	CCGC	2 cut(s)	197, 348
AcoI	YGGCCR	3 cut(s)	24, 123, 282
AcsI	RAATTY	1 cut(s)	602
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	1 cut(s)	560
AfiI	CCNNNNNNNGG	1 cut(s)	193
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	136, 548, 582
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	4 cut(s)	38, 107, 449, 616
AluI	AGCT	4 cut(s)	38, 107, 449, 616
Alw26I	GTCTC	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	116
AoxI	GGCC	4 cut(s)	24, 123, 264, 282
ApeKI	GCWGC	2 cut(s)	35, 449
ApoI	RAATTY	1 cut(s)	602
AspA2I	CCTAGG	1 cut(s)	649
AspS9I	GGNCC	3 cut(s)	411, 510, 572
AsuC2I	CCSGG	2 cut(s)	286, 409
AsuHPI	GGTGA	2 cut(s)	218, 352
AvaII	GGWCC	3 cut(s)	411, 510, 572
AvrII	CCTAGG	1 cut(s)	649
BalI	TGGCCA	2 cut(s)	26, 125
BbvI	GCAGC	2 cut(s)	47, 436
BccI	CCATC	2 cut(s)	35, 501
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	576
BciVI	GTATCC	1 cut(s)	374
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	2 cut(s)	286, 409
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	650
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	2 cut(s)	36, 450
BlnI	CCTAGG	1 cut(s)	649
BlpI	GCTNAGC	1 cut(s)	617
BlsI	GCNGC	2 cut(s)	37, 451
Bme1390I	CCNGG	3 cut(s)	286, 409, 576
Bme18I	GGWCC	3 cut(s)	411, 510, 572
BmgT120I	GGNCC	3 cut(s)	411, 510, 572
BmiI	GGNNCC	2 cut(s)	412, 667
BmrFI	CCNGG	3 cut(s)	286, 409, 576
BmsI	GCATC	2 cut(s)	82, 199
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
Bpu1102I	GCTNAGC	1 cut(s)	617
BpuMI	CCSGG	2 cut(s)	286, 409
BsaBI	GATNNNNATC	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	3 cut(s)	81, 456, 649
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	126, 574
Bse3DI	GCAATG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	3 cut(s)	81, 456, 649
BseGI	GGATG	2 cut(s)	27, 512
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	608
BseNI	ACTGG	2 cut(s)	126, 574
BseRI	GAGGAG	2 cut(s)	215, 675
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	2 cut(s)	47, 436
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	4 cut(s)	26, 125, 266, 284
BsiEI	CGRYCG	1 cut(s)	285
BsiSI	CCGG	5 cut(s)	117, 281, 285, 408, 414
BslFI	GGGAC	2 cut(s)	338, 424
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	2 cut(s)	338, 424
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	4 cut(s)	26, 125, 266, 284
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	48
Bsp1720I	GCTNAGC	1 cut(s)	617
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	2 cut(s)	197, 348
BspANI	GGCC	4 cut(s)	26, 125, 266, 284
BspCNI	CTCAG	1 cut(s)	609
BspEI	TCCGGA	1 cut(s)	116
BspLI	GGNNCC	2 cut(s)	412, 667
BsrDI	GCAATG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	126, 574
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	3 cut(s)	81, 456, 649
BssMI	GATC	1 cut(s)	48
BssNI	GRCGYC	1 cut(s)	630
BssT1I	CCWWGG	3 cut(s)	81, 456, 649
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	2 cut(s)	76, 340
BstACI	GRCGYC	1 cut(s)	630
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	617
BstDSI	CCRYGG	1 cut(s)	81
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	27, 512
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	48
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 92, 446
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	3 cut(s)	284, 407, 574
BstV1I	GCAGC	2 cut(s)	47, 436
BstXI	CCANNNNNNTGG	1 cut(s)	507
BstZI	CGGCCG	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	4 cut(s)	26, 125, 266, 284
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	27, 512
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	3 cut(s)	411, 510, 572
CseI	GACGC	1 cut(s)	638
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	4 cut(s)	32, 82, 481, 586
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	1 cut(s)	617
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	3 cut(s)	24, 123, 282
EagI	CGGCCG	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	212
EclXI	CGGCCG	1 cut(s)	282
Eco130I	CCWWGG	3 cut(s)	81, 456, 649
Eco47I	GGWCC	3 cut(s)	411, 510, 572
Eco52I	CGGCCG	1 cut(s)	282
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	3 cut(s)	81, 456, 649
ErhI	CCWWGG	3 cut(s)	81, 456, 649
FaeI	CATG	4 cut(s)	35, 85, 484, 589
FaqI	GGGAC	2 cut(s)	338, 424
FatI	CATG	4 cut(s)	31, 81, 480, 585
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	2 cut(s)	36, 450
FokI	GGATG	2 cut(s)	14, 519
Fsp4HI	GCNGC	2 cut(s)	36, 450
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	2 cut(s)	36, 450
HaeIII	GGCC	4 cut(s)	26, 125, 266, 284
HapII	CCGG	5 cut(s)	117, 281, 285, 408, 414
HgaI	GACGC	1 cut(s)	638
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	4 cut(s)	35, 85, 484, 589
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	5 cut(s)	117, 281, 285, 408, 414
HphI	GGTGA	2 cut(s)	218, 352
Hpy166II	GTNNAC	2 cut(s)	394, 628
Hpy188I	TCNGA	2 cut(s)	42, 262
Hpy188III	TCNNGA	2 cut(s)	52, 117
Hpy8I	GTNNAC	2 cut(s)	394, 628
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	217, 497
HpyCH4III	ACNGT	2 cut(s)	76, 340
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	35, 95, 399
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 92, 446
HpyF3I	CTNAG	1 cut(s)	617
HpySE526I	ACGT	1 cut(s)	298
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	4 cut(s)	35, 85, 484, 589
Kpn2I	TCCGGA	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	2 cut(s)	47, 436
LweI	GCATC	2 cut(s)	82, 199
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	298
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MlsI	TGGCCA	2 cut(s)	26, 125
MluCI	AATT	4 cut(s)	303, 517, 548, 602
MluNI	TGGCCA	2 cut(s)	26, 125
MnlI	CCTC	9 cut(s)	181, 193, 196, 256, 311, 364, 655, 693, 696
Mox20I	TGGCCA	2 cut(s)	26, 125
MroI	TCCGGA	1 cut(s)	116
MscI	TGGCCA	2 cut(s)	26, 125
MslI	CAYNNNNRTG	1 cut(s)	479
Msp20I	TGGCCA	2 cut(s)	26, 125
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	5 cut(s)	117, 281, 285, 408, 414
MspR9I	CCNGG	3 cut(s)	286, 409, 576
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	3 cut(s)	32, 92, 446
NciI	CCSGG	2 cut(s)	286, 409
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	4 cut(s)	35, 85, 484, 589
NlaIV	GGNNCC	2 cut(s)	412, 667
PctI	GAATGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	37, 451
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	412, 667
PspPI	GGNCC	3 cut(s)	411, 510, 572
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
RseI	CAYNNNNRTG	1 cut(s)	479
SatI	GCNGC	2 cut(s)	36, 450
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	3 cut(s)	411, 510, 572
ScrFI	CCNGG	3 cut(s)	286, 409, 576
SfaNI	GCATC	2 cut(s)	82, 199
SinI	GGWCC	3 cut(s)	411, 510, 572
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	4 cut(s)	303, 517, 548, 602
SsiI	CCGC	2 cut(s)	197, 348
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	3 cut(s)	284, 407, 574
StyI	CCWWGG	3 cut(s)	81, 456, 649
TaaI	ACNGT	2 cut(s)	76, 340
TaiI	ACGT	1 cut(s)	301
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	4 cut(s)	303, 517, 548, 602
TatI	WGTACW	1 cut(s)	558
TfiI	GAWTC	1 cut(s)	58
TscAI	CASTG	1 cut(s)	401
TseI	GCWGC	2 cut(s)	35, 449
TspDTI	ATGAA	1 cut(s)	631
TspGWI	ACGGA	2 cut(s)	345, 393
TspRI	CASTG	1 cut(s)	401
VpaK11BI	GGWCC	3 cut(s)	411, 510, 572
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	602
XmaJI	CCTAGG	1 cut(s)	649
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.