AT5G07430

pectinesterase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
2352436 .. 2354338
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07430.1

Sequence Viewer

Length: 1086 bp
ATGGGTTACATTTCAATGTCCGTGGTTGCATTCCTTGTTGTTTTTGCTTCGCCGGTGGTTCTAGCCACCGATACAGATCCGATTCCAGAAAACAGAGCCCAAATCCCGCAATGGTTTAAAACAAACGTTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCGAAGCTGCTGAAGCAGCGCGACAAATTATCACCGTGAATCAAAAAGGTGGCGCTAATTTCAAGACATTAAACGAAGCTATCAAGAGCATTCCGACAGGAAACAAGAACCGTGTGATCATCAAGTTGGCTCCTGGTGTATACAATGAGAAGGTCACAATCGACATAGCTCGACCATTCATTACATTGCTTGGTCAACCTGGTGCGGAAACGGTCTTGACTTACCACGGGACAGCCGCTCAGTACGGAACCGTTGAGAGTGCAACTCTTATCGTCTGGGCTGAATATTTCCAGGCAGCTCACCTCACCATTAAAAACACTGCTCCAATGCCGAAACCAGGTTCACAGGGACAAGCTCTAGCAATGAGGATCAACGCTGATAAGGCAGCTTTCTATAGTTGTAGATTCCATGGTTTTCAAGATACTCTCTGTGACGACAAGGGCAACCATTTCTTCAAGGATTGTTACATCGAAGGAACTTATGATTTTATCTTTGGAAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGCTGTTGGAGATGGATTAAGAGTGATCACAGCTCAAGGTAGACAAAGTGCAACCGAACAAAACGGATACACGTTCGTGCACTGCAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCAGGTCTTGGATGAGCCACCCTAAAGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAATCCATCTGGCTGGAGGGAGAACCTCAACCGCGGATATGACAAGACGGTGTTCTATGGAGAATACAAGTGTTTCGGACCAGGGTCACACTTAGAGAAGAGAGTGCCTTACACACAAGATATTGACAAAAACGAAGTTACGCCTTTCCTCACTCTTGGTTACATTAAGGGCTCCACATGGCTACTTCCTCCTCCTAAATACTGA

Protein Analysis

361

Amino Acids

39.91

Weight (kDa)

8.98

Isoelectric Point (pI)

21.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 67 - 351 2.9e-60 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 813
AccBSI CCGCTC 1 cut(s) 407
AccI GTMKAC 2 cut(s) 309, 742
AccII CGCG 2 cut(s) 190, 915
AciI CCGC 6 cut(s) 107, 165, 374, 405, 913, 915
AclI AACGTT 1 cut(s) 126
AclWI GGATC 2 cut(s) 71, 545
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 413, 683
AfiI CCNNNNNNNGG 2 cut(s) 148, 506
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 5 cut(s) 15, 232, 587, 625, 688
AjnI CCWGG 5 cut(s) 301, 367, 459, 505, 961
AleI CACNNNNGTG 1 cut(s) 776
AluBI AGCT 8 cut(s) 176, 248, 338, 467, 524, 557, 674, 734
AluI AGCT 8 cut(s) 176, 248, 338, 467, 524, 557, 674, 734
Alw21I GWGCWC 1 cut(s) 783
Alw44I GTGCAC 1 cut(s) 779
AlwI GGATC 2 cut(s) 71, 545
ApaLI GTGCAC 1 cut(s) 779
ApeKI GCWGC 4 cut(s) 176, 185, 464, 554
AspLEI GCGC 2 cut(s) 190, 224
AspS9I GGNCC 1 cut(s) 959
AsuHPI GGTGA 3 cut(s) 193, 461, 466
AvaII GGWCC 1 cut(s) 959
BaeGI GKGCMC 2 cut(s) 155, 783
BanII GRGCYC 2 cut(s) 100, 1055
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 4 cut(s) 163, 197, 476, 566
BccI CCATC 2 cut(s) 707, 895
BciT130I CCWGG 5 cut(s) 303, 369, 461, 507, 963
BciVI GTATCC 1 cut(s) 761
BclI TGATCA 2 cut(s) 285, 726
BfaI CTAG 3 cut(s) 62, 158, 527
BfmI CTRYAG 1 cut(s) 562
BfoI RGCGCY 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 813
BfuI GTATCC 1 cut(s) 761
BisI GCNGC 5 cut(s) 177, 186, 405, 465, 555
BlsI GCNGC 5 cut(s) 178, 187, 406, 466, 556
Bme1390I CCNGG 5 cut(s) 303, 369, 461, 507, 963
Bme18I GGWCC 1 cut(s) 959
BmgT120I GGNCC 1 cut(s) 959
BmiI GGNNCC 5 cut(s) 300, 418, 799, 805, 1054
BmrFI CCNGG 5 cut(s) 303, 369, 461, 507, 963
BoxI GACNNNNGTC 1 cut(s) 964
BplI GAGNNNNNCTC 2 cut(s) 418, 450
BpmI CTGGAG 1 cut(s) 916
BpuEI CTTGAG 1 cut(s) 720
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 5 cut(s) 21, 394, 577, 913, 962
BsaWI WCCGGW 2 cut(s) 800, 806
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 506
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 799
Bse3DI GCAATG 3 cut(s) 116, 353, 537
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 5 cut(s) 303, 369, 461, 507, 963
BseDI CCNNGG 5 cut(s) 21, 394, 577, 913, 962
BseGI GGATG 1 cut(s) 837
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 148, 506
BseMI GCAATG 3 cut(s) 116, 353, 537
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 799
BseRI GAGGAG 2 cut(s) 684, 1062
BseSI GKGCMC 2 cut(s) 155, 783
BseXI GCAGC 4 cut(s) 163, 197, 476, 566
Bsh1236I CGCG 2 cut(s) 190, 915
BsiHKAI GWGCWC 1 cut(s) 783
BsiSI CCGG 3 cut(s) 53, 801, 807
BslFI GGGAC 2 cut(s) 412, 531
BslI CCNNNNNNNGG 2 cut(s) 148, 506
BsmFI GGGAC 2 cut(s) 412, 531
BsmI GAATGC 2 cut(s) 29, 258
Bsp1286I GDGCHC 4 cut(s) 100, 155, 783, 1055
Bsp143I GATC 4 cut(s) 76, 285, 537, 726
Bsp19I CCATGG 1 cut(s) 577
BspACI CCGC 6 cut(s) 107, 165, 374, 405, 913, 915
BspCNI CTCAG 1 cut(s) 421
BspFNI CGCG 2 cut(s) 190, 915
BspLI GGNNCC 5 cut(s) 300, 418, 799, 805, 1054
BspMI ACCTGC 1 cut(s) 813
BspPI GGATC 2 cut(s) 71, 545
BsrBI CCGCTC 1 cut(s) 407
BsrDI GCAATG 3 cut(s) 116, 353, 537
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 1 cut(s) 799
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 5 cut(s) 21, 394, 577, 913, 962
BssMI GATC 4 cut(s) 76, 285, 537, 726
BssNAI GTATAC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 577
Bst1107I GTATAC 1 cut(s) 310
Bst2UI CCWGG 5 cut(s) 303, 369, 461, 507, 963
Bst4CI ACNGT 5 cut(s) 205, 281, 382, 421, 931
Bst6I CTCTTC 2 cut(s) 661, 974
BstC8I GCNNGC 2 cut(s) 155, 702
BstDEI CTNAG 2 cut(s) 408, 973
BstDSI CCRYGG 4 cut(s) 21, 394, 577, 913
BstF5I GGATG 1 cut(s) 837
BstFNI CGCG 2 cut(s) 190, 915
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 190, 224
BstKTI GATC 4 cut(s) 79, 288, 540, 729
BstMBI GATC 4 cut(s) 76, 285, 537, 726
BstMWI GCNNNNNNNGC 4 cut(s) 173, 182, 185, 551
BstNI CCWGG 5 cut(s) 303, 369, 461, 507, 963
BstPAI GACNNNNGTC 1 cut(s) 964
BstSCI CCNGG 5 cut(s) 301, 367, 459, 505, 961
BstSFI CTRYAG 1 cut(s) 562
BstSLI GKGCMC 2 cut(s) 155, 783
BstUI CGCG 2 cut(s) 190, 915
BstV1I GCAGC 4 cut(s) 163, 197, 476, 566
BstX2I RGATCY 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 894
BstYI RGATCY 1 cut(s) 76
BstZ17I GTATAC 1 cut(s) 310
BsuI GTATCC 1 cut(s) 761
BtgI CCRYGG 4 cut(s) 21, 394, 577, 913
BtsCI GGATG 1 cut(s) 837
BtsI GCAGTG 2 cut(s) 486, 781
BtsIMutI CAGTG 3 cut(s) 486, 781, 792
BveI ACCTGC 1 cut(s) 813
Cac8I GCNNGC 2 cut(s) 155, 702
CfoI GCGC 2 cut(s) 190, 224
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 959
Cfr42I CCGCGG 1 cut(s) 916
CsiI ACCWGGT 2 cut(s) 367, 505
Csp6I GTAC 2 cut(s) 412, 682
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 2 cut(s) 578, 1059
CviQI GTAC 2 cut(s) 412, 682
DdeI CTNAG 2 cut(s) 408, 973
DpnI GATC 4 cut(s) 78, 287, 539, 728
DpnII GATC 4 cut(s) 76, 285, 537, 726
DraI TTTAAA 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 661, 974
EarI CTCTTC 2 cut(s) 661, 974
Eco130I CCWWGG 1 cut(s) 577
Eco24I GRGCYC 2 cut(s) 100, 1055
Eco47I GGWCC 1 cut(s) 959
Eco57I CTGAAG 1 cut(s) 201
EcoRII CCWGG 5 cut(s) 301, 367, 459, 505, 961
EcoT14I CCWWGG 1 cut(s) 577
EcoT38I GRGCYC 2 cut(s) 100, 1055
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 2 cut(s) 581, 1062
FalI AAGNNNNNCTT 2 cut(s) 658, 690
FaqI GGGAC 2 cut(s) 412, 531
FatI CATG 2 cut(s) 577, 1058
FauI CCCGC 2 cut(s) 114, 172
FbaI TGATCA 2 cut(s) 285, 726
FblI GTMKAC 2 cut(s) 309, 742
Fnu4HI GCNGC 5 cut(s) 177, 186, 405, 465, 555
FokI GGATG 1 cut(s) 844
FriOI GRGCYC 2 cut(s) 100, 1055
Fsp4HI GCNGC 5 cut(s) 177, 186, 405, 465, 555
FspBI CTAG 3 cut(s) 62, 158, 527
GlaI GCGC 2 cut(s) 189, 223
GluI GCNGC 5 cut(s) 177, 186, 405, 465, 555
GsuI CTGGAG 1 cut(s) 916
HaeII RGCGCY 1 cut(s) 225
HapII CCGG 3 cut(s) 53, 801, 807
HhaI GCGC 2 cut(s) 190, 224
Hin1II CATG 2 cut(s) 581, 1062
Hin6I GCGC 2 cut(s) 188, 222
HinP1I GCGC 2 cut(s) 188, 222
HincII GTYRAC 1 cut(s) 365
HindII GTYRAC 1 cut(s) 365
HinfI GANTC 4 cut(s) 82, 208, 573, 810
HpaII CCGG 3 cut(s) 53, 801, 807
HphI GGTGA 3 cut(s) 193, 461, 466
Hpy166II GTNNAC 5 cut(s) 310, 365, 512, 743, 781
Hpy188I TCNGA 3 cut(s) 81, 264, 959
Hpy188III TCNNGA 5 cut(s) 86, 232, 253, 385, 587
Hpy8I GTNNAC 5 cut(s) 310, 365, 512, 743, 781
HpyAV CCTTC 2 cut(s) 313, 635
HpyCH4III ACNGT 5 cut(s) 205, 281, 382, 421, 931
HpyCH4IV ACGT 2 cut(s) 126, 773
HpyCH4V TGCA 6 cut(s) 29, 431, 700, 752, 781, 786
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 182, 185, 551
HpyF3I CTNAG 2 cut(s) 408, 973
HpySE526I ACGT 2 cut(s) 126, 773
Hsp92II CATG 2 cut(s) 581, 1062
HspAI GCGC 2 cut(s) 188, 222
Ksp22I TGATCA 2 cut(s) 285, 726
KspI CCGCGG 1 cut(s) 916
Kzo9I GATC 4 cut(s) 76, 285, 537, 726
LmnI GCTCC 4 cut(s) 304, 496, 671, 1058
Lsp1109I GCAGC 4 cut(s) 163, 197, 476, 566
MabI ACCWGGT 2 cut(s) 367, 505
MaeI CTAG 3 cut(s) 62, 158, 527
MaeII ACGT 2 cut(s) 126, 773
MaeIII GTNAC 8 cut(s) 5, 322, 599, 632, 790, 966, 1018, 1040
MalI GATC 4 cut(s) 78, 287, 539, 728
MbiI CCGCTC 1 cut(s) 407
MboI GATC 4 cut(s) 76, 285, 537, 726
MboII GAAGA 3 cut(s) 613, 678, 991
MfeI CAATTG 1 cut(s) 695
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 4 cut(s) 100, 155, 783, 1055
MluCI AATT 3 cut(s) 195, 226, 695
MmeI TCCRAC 2 cut(s) 287, 688
MnlI CCTC 9 cut(s) 179, 482, 528, 662, 891, 917, 1040, 1080, 1083
MseI TTAA 6 cut(s) 117, 129, 239, 480, 719, 1047
MslI CAYNNNNRTG 3 cut(s) 14, 776, 866
MspA1I CMGCKG 1 cut(s) 915
MspI CCGG 3 cut(s) 53, 801, 807
MspR9I CCNGG 5 cut(s) 303, 369, 461, 507, 963
MunI CAATTG 1 cut(s) 695
Mva1269I GAATGC 2 cut(s) 29, 258
MvaI CCWGG 5 cut(s) 303, 369, 461, 507, 963
MvnI CGCG 2 cut(s) 190, 915
MwoI GCNNNNNNNGC 4 cut(s) 173, 182, 185, 551
NcoI CCATGG 1 cut(s) 577
NdeII GATC 4 cut(s) 76, 285, 537, 726
NlaIII CATG 2 cut(s) 581, 1062
NlaIV GGNNCC 5 cut(s) 300, 418, 799, 805, 1054
NmuCI GTSAC 4 cut(s) 322, 599, 790, 966
OliI CACNNNNGTG 1 cut(s) 776
PctI GAATGC 2 cut(s) 29, 258
PfeI GAWTC 4 cut(s) 82, 208, 573, 810
PkrI GCNGC 5 cut(s) 178, 187, 406, 466, 556
PshAI GACNNNNGTC 1 cut(s) 964
Psp1406I AACGTT 1 cut(s) 126
Psp6I CCWGG 5 cut(s) 301, 367, 459, 505, 961
PspGI CCWGG 5 cut(s) 301, 367, 459, 505, 961
PspN4I GGNNCC 5 cut(s) 300, 418, 799, 805, 1054
PspPI GGNCC 1 cut(s) 959
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 2 cut(s) 413, 683
RsaNI GTAC 2 cut(s) 412, 682
RseI CAYNNNNRTG 3 cut(s) 14, 776, 866
SacII CCGCGG 1 cut(s) 916
SaqAI TTAA 6 cut(s) 117, 129, 239, 480, 719, 1047
SatI GCNGC 5 cut(s) 177, 186, 405, 465, 555
Sau3AI GATC 4 cut(s) 76, 285, 537, 726
Sau96I GGNCC 1 cut(s) 959
ScrFI CCNGG 5 cut(s) 303, 369, 461, 507, 963
SduI GDGCHC 4 cut(s) 100, 155, 783, 1055
SexAI ACCWGGT 2 cut(s) 367, 505
SfcI CTRYAG 1 cut(s) 562
Sfr303I CCGCGG 1 cut(s) 916
SgrAI CRCCGGYG 1 cut(s) 52
SgrBI CCGCGG 1 cut(s) 916
SinI GGWCC 1 cut(s) 959
SmiMI CAYNNNNRTG 3 cut(s) 14, 776, 866
SmlI CTYRAG 1 cut(s) 735
SmoI CTYRAG 1 cut(s) 735
Sse9I AATT 3 cut(s) 195, 226, 695
SsiI CCGC 6 cut(s) 107, 165, 374, 405, 913, 915
SspI AATATT 1 cut(s) 455
SspMI CTAG 3 cut(s) 62, 158, 527
StyD4I CCNGG 5 cut(s) 301, 367, 459, 505, 961
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 5 cut(s) 205, 281, 382, 421, 931
TaiI ACGT 2 cut(s) 129, 776
TaqI TCGA 4 cut(s) 171, 330, 340, 639
TasI AATT 3 cut(s) 195, 226, 695
TatI WGTACW 1 cut(s) 681
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 4 cut(s) 82, 208, 573, 810
Tru1I TTAA 6 cut(s) 117, 129, 239, 480, 719, 1047
Tru9I TTAA 6 cut(s) 117, 129, 239, 480, 719, 1047
TscAI CASTG 3 cut(s) 493, 788, 799
TseFI GTSAC 4 cut(s) 322, 599, 790, 966
TseI GCWGC 4 cut(s) 176, 185, 464, 554
Tsp45I GTSAC 4 cut(s) 322, 599, 790, 966
TspDTI ATGAA 1 cut(s) 337
TspGWI ACGGA 3 cut(s) 10, 429, 780
TspRI CASTG 3 cut(s) 493, 788, 799
VneI GTGCAC 1 cut(s) 779
VpaK11BI GGWCC 1 cut(s) 959
XmiI GTMKAC 2 cut(s) 309, 742
XspI CTAG 3 cut(s) 62, 158, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.