Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

1498879 .. 1501684

Gene Structure 2806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G011200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCCAGAAAAAACACATGCTTGGGTGTCCATGCAGCTCTAACTGTGACATTAATTCTCCTCACCACCATTATAGCGGGGGCAGATGATGAAACACTGGTTGTTACTGACCACCCCCAAGTCAACACGTGGTTCAATAACAATGTCAATCCATACAAAGAACGGCAGGGCACGCTTGACCCTGCCCTTGTAACGGCTGAGGTTGGTCAAACCGTCGTCAAGGTTATGAAAGATAGAAGTGGAGAATTCAAGACCATCACTGGCGCTGTTAATAGCATTCCGGTCGACAACACCAAACGTGTCATTGTGTACATTGGAGGGGGAGAGTACAATGAGAAAATCACAATTCCACGGAATAAATCATTTGTTACATTTTATGGCTCTCCAACAAATATACCAACTTTGACCTTTGCTGGCACAGCCCAAAAGTATGGAACTGTGGACAGTGCCACAGTGATTGCCGAATCCGACTACTTTGTGGCAGCTAACCTAATTATTAAGAACTCTTCGCCAAAGCCAGATGGGAAAAGAGTGGGAGAACAGGCATTGGCATTGAGAGTGTCGGGGAACAAGTCAGCCTTGTTCAATTGCAGGCTGATTGGTTTCCAAGACACACTTTGTGATGACAAGGGCAATCATTTTTTCCAGGACTGCTTTATTGAAGGCACTGTGGATTTCATCTTTGGAAGTGGAAAGTCTCTCTATTTGTTACATGTGCTGGGGAATAATGAAATGACAGTGATAATAGCACAAGCAAGGAACTCAGCTTCAGAAGATACTGGATACTCATTTGTCCACTGCAACATAACTGGGACTGGAAATGGCACGTATTTGGGCAGGGCTTGGAGGACTAGTCCCAGGGTGGTCTTTGCCTACACCAGCATGTCTGAGGTCATCACCCCAGCCGACTGGAACAACAAGAACCGCCCCAAACGTGACAGAACCGTGTTCTATGGAGAATACAAGTGTTCGGGTCCAGCTTCAAGTATGGTTGGGAGAGTAAAATACACCAAACAGCTGAATGAGGAACAAATCAAACCTTTCCTCAGCTTGAGCTATATTCAGGGTTCCAAATGGCTGCTTCCTCCTCCAAATCCAAAAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

369

Amino Acids

40.38

Weight (kDa)

8.96

Isoelectric Point (pI)

26.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	2 cut(s)	77, 925
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	753
AcvI	CACGTG	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	2 cut(s)	311, 329
AfiI	CCNNNNNNNGG	1 cut(s)	193
AflIII	ACRYGT	3 cut(s)	126, 298, 712
AgsI	TTSAA	5 cut(s)	136, 250, 586, 662, 984
AhlI	ACTAGT	1 cut(s)	851
AjnI	CCWGG	2 cut(s)	645, 857
AluBI	AGCT	7 cut(s)	38, 485, 767, 980, 1018, 1050, 1056
AluI	AGCT	7 cut(s)	38, 485, 767, 980, 1018, 1050, 1056
Alw26I	GTCTC	1 cut(s)	702
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	35, 482, 1078
ApoI	RAATTY	1 cut(s)	245
AseI	ATTAAT	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	974
AsuHPI	GGTGA	2 cut(s)	55, 889
AvaII	GGWCC	1 cut(s)	974
BaeGI	GKGCMC	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	5
BbrPI	CACGTG	1 cut(s)	129
BbvCI	CCTCAGC	2 cut(s)	198, 1046
BbvI	GCAGC	3 cut(s)	47, 494, 1065
BccI	CCATC	2 cut(s)	263, 515
BceAI	ACGGC	2 cut(s)	179, 210
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	2 cut(s)	647, 859
BciVI	GTATCC	1 cut(s)	776
BcoDI	GTCTC	1 cut(s)	702
BcuI	ACTAGT	1 cut(s)	851
BfaI	CTAG	1 cut(s)	852
BfoI	RGCGCY	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	776
BisI	GCNGC	3 cut(s)	36, 483, 1079
BlsI	GCNGC	3 cut(s)	37, 484, 1080
Bme1390I	CCNGG	2 cut(s)	647, 859
Bme18I	GGWCC	1 cut(s)	974
BmgT120I	GGNCC	1 cut(s)	974
BmiI	GGNNCC	2 cut(s)	975, 1069
BmrFI	CCNGG	2 cut(s)	647, 859
BmrI	ACTGGG	1 cut(s)	819
BmuI	ACTGGG	1 cut(s)	819
Bpu10I	CCTNAGC	2 cut(s)	198, 1046
BpuEI	CTTGAG	1 cut(s)	1072
BsaAI	YACGTR	2 cut(s)	129, 828
BsaJI	CCNNGG	3 cut(s)	350, 857, 858
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	838, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	6 cut(s)	102, 265, 784, 814, 820, 914
BseBI	CCWGG	2 cut(s)	647, 859
BseDI	CCNNGG	3 cut(s)	350, 857, 858
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	4 cut(s)	189, 777, 879, 1060
BseNI	ACTGG	6 cut(s)	102, 265, 784, 814, 820, 914
BseRI	GAGGAG	2 cut(s)	50, 1077
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	47, 494, 1065
BseYI	CCCAGC	2 cut(s)	718, 901
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	281
BslFI	GGGAC	2 cut(s)	826, 840
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	702
BsmFI	GGGAC	2 cut(s)	826, 840
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	309
BspACI	CCGC	2 cut(s)	77, 925
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	190, 776, 880, 1059
BspLI	GGNNCC	2 cut(s)	975, 1069
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	6 cut(s)	102, 265, 784, 814, 820, 914
BssECI	CCNNGG	3 cut(s)	350, 857, 858
Bst2UI	CCWGG	2 cut(s)	647, 859
Bst4CI	ACNGT	8 cut(s)	46, 214, 439, 446, 454, 670, 739, 946
Bst6I	CTCTTC	1 cut(s)	511
BstAUI	TGTACA	1 cut(s)	309
BstBAI	YACGTR	2 cut(s)	129, 828
BstC8I	GCNNGC	3 cut(s)	173, 415, 593
BstDEI	CTNAG	4 cut(s)	198, 763, 888, 1046
BstDSI	CCRYGG	1 cut(s)	350
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstMAI	GTCTC	1 cut(s)	702
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 419
BstNI	CCWGG	2 cut(s)	647, 859
BstNSI	RCATGY	3 cut(s)	21, 716, 886
BstSCI	CCNGG	2 cut(s)	645, 857
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	3 cut(s)	47, 494, 1065
BstXI	CCANNNNNNTGG	2 cut(s)	431, 909
BsuI	GTATCC	1 cut(s)	776
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	350
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	7 cut(s)	95, 258, 451, 459, 666, 744, 796
Cac8I	GCNNGC	3 cut(s)	173, 415, 593
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	974
Csp6I	GTAC	2 cut(s)	310, 328
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	4 cut(s)	18, 32, 713, 883
CviQI	GTAC	2 cut(s)	310, 328
DdeI	CTNAG	4 cut(s)	198, 763, 888, 1046
DraIII	CACNNNGTG	1 cut(s)	620
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	974
Eco57I	CTGAAG	1 cut(s)	753
Eco72I	CACGTG	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	645, 857
FaeI	CATG	4 cut(s)	21, 35, 716, 886
FalI	AAGNNNNNCTT	4 cut(s)	563, 595, 600, 632
FaqI	GGGAC	2 cut(s)	826, 840
FatI	CATG	4 cut(s)	17, 31, 712, 882
FauI	CCCGC	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	36, 483, 1079
Fsp4HI	GCNGC	3 cut(s)	36, 483, 1079
FspBI	CTAG	1 cut(s)	852
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	3 cut(s)	36, 483, 1079
GsaI	CCCAGC	2 cut(s)	722, 905
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	4 cut(s)	21, 35, 716, 886
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	2 cut(s)	124, 286
HindII	GTYRAC	2 cut(s)	124, 286
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	2 cut(s)	55, 889
Hpy166II	GTNNAC	5 cut(s)	124, 286, 310, 442, 796
Hpy188I	TCNGA	3 cut(s)	469, 772, 889
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	5 cut(s)	124, 286, 310, 442, 796
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	656
HpyCH4III	ACNGT	8 cut(s)	46, 214, 439, 446, 454, 670, 739, 946
HpyCH4IV	ACGT	4 cut(s)	128, 298, 827, 934
HpyCH4V	TGCA	3 cut(s)	35, 591, 801
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 419
HpyF3I	CTNAG	4 cut(s)	198, 763, 888, 1046
HpySE526I	ACGT	4 cut(s)	128, 298, 827, 934
Hsp92II	CATG	4 cut(s)	21, 35, 716, 886
HspAI	GCGC	1 cut(s)	264
Lsp1109I	GCAGC	3 cut(s)	47, 494, 1065
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	4 cut(s)	128, 298, 827, 934
MaeIII	GTNAC	6 cut(s)	46, 103, 190, 367, 708, 935
MboII	GAAGA	2 cut(s)	498, 785
MfeI	CAATTG	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	54, 245, 345, 492, 586
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	410, 492
MnlI	CCTC	9 cut(s)	71, 193, 311, 840, 883, 1018, 1055, 1095, 1098
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	53, 270, 498
MslI	CAYNNNNRTG	1 cut(s)	881
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1018
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	647, 859
MunI	CAATTG	1 cut(s)	586
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	2 cut(s)	647, 859
MwoI	GCNNNNNNNGC	2 cut(s)	172, 419
NlaIII	CATG	4 cut(s)	21, 35, 716, 886
NlaIV	GGNNCC	2 cut(s)	975, 1069
NmuCI	GTSAC	2 cut(s)	46, 935
NspI	RCATGY	3 cut(s)	21, 716, 886
PasI	CCCWGGG	1 cut(s)	858
PciI	ACATGT	1 cut(s)	712
PctI	GAATGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	464
PfoI	TCCNGGA	1 cut(s)	645
PkrI	GCNGC	3 cut(s)	37, 484, 1080
PmaCI	CACGTG	1 cut(s)	129
PmlI	CACGTG	1 cut(s)	129
Ppu21I	YACGTR	2 cut(s)	129, 828
PscI	ACATGT	1 cut(s)	712
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	645, 857
PspCI	CACGTG	1 cut(s)	129
PspFI	CCCAGC	2 cut(s)	718, 901
PspGI	CCWGG	2 cut(s)	645, 857
PspN4I	GGNNCC	2 cut(s)	975, 1069
PspPI	GGNCC	1 cut(s)	974
PvuII	CAGCTG	1 cut(s)	1018
RsaI	GTAC	2 cut(s)	311, 329
RsaNI	GTAC	2 cut(s)	310, 328
RseI	CAYNNNNRTG	1 cut(s)	881
SalI	GTCGAC	1 cut(s)	284
SaqAI	TTAA	3 cut(s)	53, 270, 498
SatI	GCNGC	3 cut(s)	36, 483, 1079
Sau96I	GGNCC	1 cut(s)	974
ScrFI	CCNGG	2 cut(s)	647, 859
SduI	GDGCHC	1 cut(s)	173
SinI	GGWCC	1 cut(s)	974
SmiMI	CAYNNNNRTG	1 cut(s)	881
SmlI	CTYRAG	1 cut(s)	1051
SmoI	CTYRAG	1 cut(s)	1051
SpeI	ACTAGT	1 cut(s)	851
Sse9I	AATT	5 cut(s)	54, 245, 345, 492, 586
SsiI	CCGC	2 cut(s)	77, 925
SspMI	CTAG	1 cut(s)	852
StyD4I	CCNGG	2 cut(s)	645, 857
TaaI	ACNGT	8 cut(s)	46, 214, 439, 446, 454, 670, 739, 946
TaiI	ACGT	4 cut(s)	131, 301, 830, 937
TaqI	TCGA	1 cut(s)	285
TasI	AATT	5 cut(s)	54, 245, 345, 492, 586
TatI	WGTACW	2 cut(s)	309, 327
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	3 cut(s)	53, 270, 498
Tru9I	TTAA	3 cut(s)	53, 270, 498
TscAI	CASTG	7 cut(s)	102, 265, 451, 459, 673, 744, 803
TseFI	GTSAC	2 cut(s)	46, 935
TseI	GCWGC	3 cut(s)	35, 482, 1078
Tsp45I	GTSAC	2 cut(s)	46, 935
TspDTI	ATGAA	4 cut(s)	105, 242, 667, 744
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	7 cut(s)	102, 265, 451, 459, 673, 744, 803
VpaK11BI	GGWCC	1 cut(s)	974
VspI	ATTAAT	1 cut(s)	53
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	3 cut(s)	21, 716, 886
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.