Prupe.7G192800_v2.0.a1

pectinesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001024
Physical Location & Seq
Forward (+)
18378783 .. 18381157
2375 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G192800.1

Sequence Viewer

Length: 1113 bp
ATGGCACCATTTCTTGCTCCCAACCTCATCACCATCATCATGATCACGATCATCACAACCTCACCGCAGCTCGTTCTGACTCACCCGAACCTCATCCCTCCCCACCTCTCCCAACTCGACACGTGGATCGTCCACAACATGAGGGACTACGCCAACCGCAAGGCTACCCAAGTCACTCTCCGCTTCGACTCTAAATTGCTCTCCGCCGAGTACGCCTTCAAAATAATAACCGTCAAGAAAGACGGCACCGGAGACTTCAAAACAGTCACTGACGCCGTCAACAGCATTCCGTCGTGGAACAAGCGTCGCGTCGTGGTGTTCATCGACGGGGGTGAGTACAGAGAGAAGATTCTGGTCGACGTGTCGCGGCCGTTCGTGACCTTTTACGGGGATAAGAACGACGTGCCATCGATCACGTTTGACGGCACGGCGTTGAAGTACGGGACGTGGGATAGTGCCACGGTGGCCATCGAGGCCGACTACTTCGTGGCCGTCAACATTGCGTTCGTGAATTCGGCTCCAATGCCGGACGGGAAGAGGCCGGGGGCGCAGGCGGTGGCGATGAGAATATCAGGGGACAAGGCAGCGTTTCACAGCTGCAGGTTCATAGGGTTTCAGGACACGTTGTGTGACGATAGGGGGAGGCATTTCTTCAAGGACTGCTACATCCAAGGCACTGTTGATTTCATCTTTGGCAATGGCAAATCCCTCTACTTGAACAATAGGATACATTCAGTGGCAAATGGAATGGGGGTGATAACAGCACATGCAAGGGAAGATGCGGCAGACGACAGTGGGTTTGCGTTTGTGCATTGCAACATAACAGGGACAGGTGACACATTTCTTGGGAGGGCTTGGAGGGACAGAGCTAGGGTTGTGTTTGCTTACACGTACATGGGATCTCTCATCGACAGCCAAGGATGGTCTGACGCCAAGCACTCTGAGCGCGACAAGACTGTGTATTATGGAGAGTACAAGTGTATGGGACCGGGTTCGAGCTCAACGGGTCGGGTCAAGTATGCAAAGATGTTATCCGATGAAGAAGCAAAGCCCTTCCTCAGCATGACTTTTATCAGAGGAACAAAGTGGGTTCTCCCACCTCCCAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Pectinesterase

Protein Analysis

371

Amino Acids

41.21

Weight (kDa)

8.79

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 591
AccB1I GGYRCC 2 cut(s) 4, 245
AccI GTMKAC 1 cut(s) 357
AccII CGCG 3 cut(s) 309, 367, 948
AciI CCGC 7 cut(s) 65, 157, 181, 204, 367, 554, 782
AclWI GGATC 2 cut(s) 134, 907
AcoI YGGCCR 3 cut(s) 368, 465, 489
AcsI RAATTY 1 cut(s) 511
AcvI CACGTG 1 cut(s) 123
AcyI GRCGYC 2 cut(s) 273, 930
AdeI CACNNNGTG 1 cut(s) 627
AfaI GTAC 5 cut(s) 212, 338, 440, 893, 974
AfiI CCNNNNNNNGG 1 cut(s) 387
AflIII ACRYGT 4 cut(s) 120, 360, 621, 888
AgsI TTSAA 5 cut(s) 220, 259, 436, 655, 718
AjiI CACGTC 3 cut(s) 361, 403, 447
AluBI AGCT 5 cut(s) 70, 597, 869, 999, 1108
AluI AGCT 5 cut(s) 70, 597, 869, 999, 1108
Alw21I GWGCWC 1 cut(s) 1001
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 2 cut(s) 134, 907
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 5 cut(s) 368, 465, 474, 489, 539
ApeKI GCWGC 3 cut(s) 67, 584, 597
ApoI RAATTY 1 cut(s) 511
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
AspLEI GCGC 2 cut(s) 550, 948
AspS9I GGNCC 1 cut(s) 986
AsuC2I CCSGG 2 cut(s) 543, 990
AsuHPI GGTGA 6 cut(s) 22, 54, 74, 344, 766, 845
AvaII GGWCC 1 cut(s) 986
BalI TGGCCA 1 cut(s) 467
BanI GGYRCC 2 cut(s) 4, 245
BanII GRGCYC 1 cut(s) 1001
BbrPI CACGTG 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 1001
BbvCI CCTCAGC 1 cut(s) 1058
BbvI GCAGC 3 cut(s) 79, 584, 596
BccI CCATC 4 cut(s) 41, 415, 476, 915
BceAI ACGGC 6 cut(s) 259, 260, 355, 439, 444, 476
BciVI GTATCC 1 cut(s) 720
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 2 cut(s) 543, 990
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 1 cut(s) 598
BfuAI ACCTGC 1 cut(s) 591
BfuI GTATCC 1 cut(s) 720
BglI GCCNNNNNGGC 2 cut(s) 464, 473
BisI GCNGC 5 cut(s) 68, 368, 585, 598, 783
BlsI GCNGC 5 cut(s) 69, 369, 586, 599, 784
Bme1390I CCNGG 2 cut(s) 543, 990
Bme18I GGWCC 1 cut(s) 986
BmgBI CACGTC 3 cut(s) 361, 403, 447
BmgT120I GGNCC 1 cut(s) 986
BmiI GGNNCC 4 cut(s) 6, 247, 519, 987
BmrFI CCNGG 2 cut(s) 543, 990
BmsI GCATC 1 cut(s) 769
Bpu10I CCTNAGC 1 cut(s) 1058
BpuMI CCSGG 2 cut(s) 543, 990
Bsa29I ATCGAT 1 cut(s) 410
BsaAI YACGTR 2 cut(s) 123, 891
BsaBI GATNNNNATC 1 cut(s) 47
BsaHI GRCGYC 2 cut(s) 273, 930
BsaJI CCNNGG 4 cut(s) 459, 542, 670, 916
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse3DI GCAATG 3 cut(s) 498, 703, 811
Bse8I GATNNNNATC 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 410
BseDI CCNNGG 4 cut(s) 459, 542, 670, 916
BseGI GGATG 3 cut(s) 93, 666, 926
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 3 cut(s) 498, 703, 811
BseMII CTCAG 2 cut(s) 933, 1072
BseX3I CGGCCG 1 cut(s) 368
BseXI GCAGC 3 cut(s) 79, 584, 596
Bsh1236I CGCG 3 cut(s) 309, 367, 948
Bsh1285I CGRYCG 1 cut(s) 371
BshFI GGCC 5 cut(s) 370, 467, 476, 491, 541
BshNI GGYRCC 2 cut(s) 4, 245
BshVI ATCGAT 1 cut(s) 410
BsiEI CGRYCG 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 1001
BsiSI CCGG 4 cut(s) 249, 527, 542, 989
BslFI GGGAC 6 cut(s) 158, 457, 590, 841, 875, 999
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 246
BsmFI GGGAC 6 cut(s) 158, 457, 590, 841, 875, 999
BsmI GAATGC 1 cut(s) 285
BsnI GGCC 5 cut(s) 370, 467, 476, 491, 541
Bsp1286I GDGCHC 1 cut(s) 1001
Bsp143I GATC 5 cut(s) 42, 48, 126, 411, 899
BspACI CCGC 7 cut(s) 65, 157, 181, 204, 367, 554, 782
BspANI GGCC 5 cut(s) 370, 467, 476, 491, 541
BspCNI CTCAG 2 cut(s) 934, 1071
BspDI ATCGAT 1 cut(s) 410
BspFNI CGCG 3 cut(s) 309, 367, 948
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 4 cut(s) 6, 247, 519, 987
BspMAI CTGCAG 1 cut(s) 602
BspMI ACCTGC 1 cut(s) 591
BspPI GGATC 2 cut(s) 134, 907
BspT107I GGYRCC 2 cut(s) 4, 245
BsrDI GCAATG 3 cut(s) 498, 703, 811
BssECI CCNNGG 4 cut(s) 459, 542, 670, 916
BssMI GATC 5 cut(s) 42, 48, 126, 411, 899
BssNI GRCGYC 2 cut(s) 273, 930
BssT1I CCWWGG 2 cut(s) 670, 916
Bst4CI ACNGT 6 cut(s) 232, 265, 463, 679, 794, 958
Bst6I CTCTTC 1 cut(s) 530
BstACI GRCGYC 2 cut(s) 273, 930
BstBAI YACGTR 2 cut(s) 123, 891
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 2 cut(s) 942, 1058
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 3 cut(s) 93, 666, 926
BstFNI CGCG 3 cut(s) 309, 367, 948
BstHHI GCGC 2 cut(s) 550, 948
BstKTI GATC 5 cut(s) 45, 51, 129, 414, 902
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 5 cut(s) 42, 48, 126, 411, 899
BstMCI CGRYCG 1 cut(s) 371
BstMWI GCNNNNNNNGC 5 cut(s) 212, 464, 473, 547, 943
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 541, 988
BstSFI CTRYAG 1 cut(s) 598
BstUI CGCG 3 cut(s) 309, 367, 948
BstV1I GCAGC 3 cut(s) 79, 584, 596
BstX2I RGATCY 1 cut(s) 899
BstYI RGATCY 1 cut(s) 899
BstZI CGGCCG 1 cut(s) 368
Bsu15I ATCGAT 1 cut(s) 410
BsuI GTATCC 1 cut(s) 720
BsuRI GGCC 5 cut(s) 370, 467, 476, 491, 541
BsuTUI ATCGAT 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 459
BtgZI GCGATG 1 cut(s) 575
BtrI CACGTC 3 cut(s) 361, 403, 447
BtsCI GGATG 3 cut(s) 93, 666, 926
BtsIMutI CAGTG 4 cut(s) 267, 675, 741, 799
BveI ACCTGC 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 552
CaiI CAGNNNCTG 1 cut(s) 269
CciI TCATGA 1 cut(s) 39
CfoI GCGC 2 cut(s) 550, 948
Cfr13I GGNCC 1 cut(s) 986
ClaI ATCGAT 1 cut(s) 410
CseI GACGC 4 cut(s) 281, 293, 298, 938
Csp6I GTAC 5 cut(s) 211, 337, 439, 892, 973
CviAII CATG 5 cut(s) 40, 139, 767, 895, 1063
CviQI GTAC 5 cut(s) 211, 337, 439, 892, 973
DdeI CTNAG 2 cut(s) 942, 1058
DpnI GATC 5 cut(s) 44, 50, 128, 413, 901
DpnII GATC 5 cut(s) 42, 48, 126, 411, 899
DraIII CACNNNGTG 1 cut(s) 627
EaeI YGGCCR 3 cut(s) 368, 465, 489
EagI CGGCCG 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 999
EclXI CGGCCG 1 cut(s) 368
Eco130I CCWWGG 2 cut(s) 670, 916
Eco24I GRGCYC 1 cut(s) 1001
Eco47I GGWCC 1 cut(s) 986
Eco52I CGGCCG 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 999
Eco72I CACGTG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 999
EcoRI GAATTC 1 cut(s) 511
EcoT14I CCWWGG 2 cut(s) 670, 916
EcoT38I GRGCYC 1 cut(s) 1001
ErhI CCWWGG 2 cut(s) 670, 916
FaeI CATG 5 cut(s) 43, 142, 770, 898, 1066
FaqI GGGAC 6 cut(s) 158, 457, 590, 841, 875, 999
FatI CATG 5 cut(s) 39, 138, 766, 894, 1062
FbaI TGATCA 1 cut(s) 42
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 5 cut(s) 68, 368, 585, 598, 783
FokI GGATG 3 cut(s) 80, 653, 933
FriOI GRGCYC 1 cut(s) 1001
Fsp4HI GCNGC 5 cut(s) 68, 368, 585, 598, 783
FspBI CTAG 1 cut(s) 870
GlaI GCGC 2 cut(s) 549, 947
GluI GCNGC 5 cut(s) 68, 368, 585, 598, 783
HaeIII GGCC 5 cut(s) 370, 467, 476, 491, 541
HapII CCGG 4 cut(s) 249, 527, 542, 989
HgaI GACGC 4 cut(s) 281, 293, 298, 938
HhaI GCGC 2 cut(s) 550, 948
Hin1I GRCGYC 2 cut(s) 273, 930
Hin1II CATG 5 cut(s) 43, 142, 770, 898, 1066
Hin6I GCGC 2 cut(s) 548, 946
HinP1I GCGC 2 cut(s) 548, 946
HincII GTYRAC 3 cut(s) 280, 358, 496
HindII GTYRAC 3 cut(s) 280, 358, 496
HinfI GANTC 3 cut(s) 79, 188, 349
HpaII CCGG 4 cut(s) 249, 527, 542, 989
HphI GGTGA 6 cut(s) 22, 54, 74, 344, 766, 845
Hpy166II GTNNAC 4 cut(s) 133, 280, 358, 496
Hpy188I TCNGA 6 cut(s) 78, 928, 943, 1036, 1076, 1112
Hpy188III TCNNGA 6 cut(s) 40, 46, 235, 376, 508, 617
Hpy8I GTNNAC 4 cut(s) 133, 280, 358, 496
Hpy99I CGWCG 6 cut(s) 295, 309, 314, 329, 362, 404
HpyAV CCTTC 2 cut(s) 226, 1063
HpyCH4III ACNGT 6 cut(s) 232, 265, 463, 679, 794, 958
HpyCH4IV ACGT 7 cut(s) 122, 360, 402, 416, 446, 623, 890
HpyCH4V TGCA 5 cut(s) 600, 770, 811, 816, 1022
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 464, 473, 547, 943
HpyF3I CTNAG 2 cut(s) 942, 1058
HpySE526I ACGT 7 cut(s) 122, 360, 402, 416, 446, 623, 890
Hsp92I GRCGYC 2 cut(s) 273, 930
Hsp92II CATG 5 cut(s) 43, 142, 770, 898, 1066
HspAI GCGC 2 cut(s) 548, 946
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 5 cut(s) 42, 48, 126, 411, 899
LmnI GCTCC 2 cut(s) 22, 523
Lsp1109I GCAGC 3 cut(s) 79, 584, 596
LweI GCATC 1 cut(s) 769
MaeI CTAG 1 cut(s) 870
MaeII ACGT 7 cut(s) 122, 360, 402, 416, 446, 623, 890
MaeIII GTNAC 5 cut(s) 172, 265, 376, 629, 833
MalI GATC 5 cut(s) 44, 50, 128, 413, 901
MboI GATC 5 cut(s) 42, 48, 126, 411, 899
MboII GAAGA 5 cut(s) 358, 547, 643, 788, 1052
MflI RGATCY 1 cut(s) 899
MhlI GDGCHC 1 cut(s) 1001
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 2 cut(s) 194, 511
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 2 cut(s) 73, 182
Mox20I TGGCCA 1 cut(s) 467
MscI TGGCCA 1 cut(s) 467
MslI CAYNNNNRTG 2 cut(s) 38, 893
Msp20I TGGCCA 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 597
MspI CCGG 4 cut(s) 249, 527, 542, 989
MspR9I CCNGG 2 cut(s) 543, 990
Mva1269I GAATGC 1 cut(s) 285
MvnI CGCG 3 cut(s) 309, 367, 948
MwoI GCNNNNNNNGC 5 cut(s) 212, 464, 473, 547, 943
NciI CCSGG 2 cut(s) 543, 990
NdeII GATC 5 cut(s) 42, 48, 126, 411, 899
NlaIII CATG 5 cut(s) 43, 142, 770, 898, 1066
NlaIV GGNNCC 4 cut(s) 6, 247, 519, 987
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 5 cut(s) 172, 265, 376, 629, 833
NspI RCATGY 1 cut(s) 770
PagI TCATGA 1 cut(s) 39
PctI GAATGC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 349
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 5 cut(s) 69, 369, 586, 599, 784
PleI GAGTC 2 cut(s) 73, 182
PmaCI CACGTG 1 cut(s) 123
PmlI CACGTG 1 cut(s) 123
PpsI GAGTC 2 cut(s) 73, 182
Ppu21I YACGTR 2 cut(s) 123, 891
Psp124BI GAGCTC 1 cut(s) 1001
PspCI CACGTG 1 cut(s) 123
PspN4I GGNNCC 4 cut(s) 6, 247, 519, 987
PspPI GGNCC 1 cut(s) 986
PstI CTGCAG 1 cut(s) 602
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 899
PsyI GACNNNGTC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 597
RsaI GTAC 5 cut(s) 212, 338, 440, 893, 974
RsaNI GTAC 5 cut(s) 211, 337, 439, 892, 973
RseI CAYNNNNRTG 2 cut(s) 38, 893
SacI GAGCTC 1 cut(s) 1001
SalI GTCGAC 1 cut(s) 356
SatI GCNGC 5 cut(s) 68, 368, 585, 598, 783
Sau3AI GATC 5 cut(s) 42, 48, 126, 411, 899
Sau96I GGNCC 1 cut(s) 986
SchI GAGTC 2 cut(s) 73, 182
ScrFI CCNGG 2 cut(s) 543, 990
SduI GDGCHC 1 cut(s) 1001
SfaNI GCATC 1 cut(s) 769
SfcI CTRYAG 1 cut(s) 598
SfiI GGCCNNNNNGGCC 1 cut(s) 473
SinI GGWCC 1 cut(s) 986
SmiMI CAYNNNNRTG 2 cut(s) 38, 893
Sse9I AATT 2 cut(s) 194, 511
SsiI CCGC 7 cut(s) 65, 157, 181, 204, 367, 554, 782
SspMI CTAG 1 cut(s) 870
SstI GAGCTC 1 cut(s) 1001
StyD4I CCNGG 2 cut(s) 541, 988
StyI CCWWGG 2 cut(s) 670, 916
TaaI ACNGT 6 cut(s) 232, 265, 463, 679, 794, 958
TaiI ACGT 7 cut(s) 125, 363, 405, 419, 449, 626, 893
TaqI TCGA 8 cut(s) 117, 186, 324, 357, 410, 471, 909, 995
TasI AATT 2 cut(s) 194, 511
TatI WGTACW 2 cut(s) 336, 972
TauI GCSGC 2 cut(s) 370, 785
TfiI GAWTC 1 cut(s) 349
TscAI CASTG 4 cut(s) 274, 682, 741, 799
TseFI GTSAC 5 cut(s) 172, 265, 376, 629, 833
TseI GCWGC 3 cut(s) 67, 584, 597
Tsp45I GTSAC 5 cut(s) 172, 265, 376, 629, 833
TspDTI ATGAA 4 cut(s) 310, 595, 676, 1053
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 4 cut(s) 274, 682, 741, 799
Tth111I GACNNNGTC 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 986
XapI RAATTY 1 cut(s) 511
XceI RCATGY 1 cut(s) 770
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.