Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

31154567 .. 31157271

Gene Structure 2705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1239900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCCGGAAAAAACACATGCATGGGCGTCCATGCAGCTCTAATTATGACAATTCTCCTCACCGCCACCGTTGCCACGGCGGACGACAATACACCGATACCATCCGACCATTCCCAAATCAACACATGGTTCGATAACAATGCGAAGCCATACACAGAACGGCAGAGCACGCTTGACCCTGCCGTTGTGACGGCCGAGGCTGGTCAAACAGTCATCAAGGTCATGCAAGATGGAAAAGGAGACTTCAAGACCGTCACTGACGCTATTAATAGCATTCCGGCCGGGAACACGAAACGTGTCATTGTGCATGTTGGCGGAGGAGAGTACAACGAAAAAATTATGATTCCACGAAATAAACCATTTGTCACTTTATATGGTTCTCCATCAAATATGCCAAATTTGACATTTGATGGCACGGCCCAGAAGTATGGAACTGTAAACAGTGCTACAGTGATTGCAGAATCTGACTACTTTGTTGCCGCTAACCTTCTTATTAAAAACTCTTCGCCAAGGCCAGATGGGAAAAGAGTGGGAGCGCAGGCGGTGGCATTGAGGGTGTCGGGCAACAATTCAGCCTTGTACAATTGCAAGTTGGTTGGATTTCAGGACACCCTTTGTGATGACAGGGGCAATCATTTGTTCAAGGACTGCTACATTGAAGGCACTGTGGATTTCATTTGGGGAAGTGGAAAGTCTCTCTATTTGAACACCGAGTTGCATGTGCTGGGAGATACTGGAATAACAGTGATAACAGCACAAGCAAGGGACTCAGCTTCGGAGGACACTGGATACTCATTTGTTCACTGCAACATAACTGGGATAGGCAGTGGCACATATTTGGGTAGGGCTTGGAGAGTTAGACCTCAGGTGGTGTATGCTTACACCAGCATGACCGAGGTAGTTAACCCTGCCGGTTGGAGCAACGATAACCACCCCGAACGTGACAACACTGTGTCCTACGGAGAGTACAAGTGCATTGGTCAAGGTTCAAGTATATATAATAAGAGAAATTTGAGCAAAGAACTAACAGACGAACAAGTCAAGCCTTTCATTAGCCTTGGATATATTCAGGGTTCCAAATGGCTGCTTCCTCCTCCAAATCCAAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

371

Amino Acids

40.16

Weight (kDa)

6.39

Isoelectric Point (pI)

24.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	73 - 358	2.9e-56	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1037
AciI	CCGC	5 cut(s)	63, 80, 315, 480, 542
AcoI	YGGCCR	3 cut(s)	3, 192, 279
AcsI	RAATTY	2 cut(s)	397, 1009
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	3 cut(s)	326, 581, 968
AflIII	ACRYGT	1 cut(s)	295
AgsI	TTSAA	5 cut(s)	247, 643, 659, 706, 990
AluBI	AGCT	2 cut(s)	38, 773
AluI	AGCT	2 cut(s)	38, 773
Alw21I	GWGCWC	1 cut(s)	170
Alw26I	GTCTC	2 cut(s)	234, 699
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	5 cut(s)	3, 192, 279, 417, 512
ApeKI	GCWGC	2 cut(s)	35, 1084
ApoI	RAATTY	2 cut(s)	397, 1009
AseI	ATTAAT	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	52
AxyI	CCTNAGG	1 cut(s)	864
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	47, 1071
BccI	CCATC	5 cut(s)	109, 224, 391, 404, 512
BceAI	ACGGC	5 cut(s)	93, 167, 176, 207, 432
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciVI	GTATCC	1 cut(s)	782
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	234, 699
BfmI	CTRYAG	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	782
BisI	GCNGC	3 cut(s)	36, 480, 1085
BlsI	GCNGC	3 cut(s)	37, 481, 1086
Bme1390I	CCNGG	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	1075
BmrFI	CCNGG	1 cut(s)	283
BmrI	ACTGGG	1 cut(s)	825
BmuI	ACTGGG	1 cut(s)	825
BpuMI	CCSGG	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	5 cut(s)	75, 195, 509, 894, 1057
Bse118I	RCCGGY	1 cut(s)	911
Bse1I	ACTGG	3 cut(s)	739, 790, 820
Bse21I	CCTNAGG	1 cut(s)	864
BseDI	CCNNGG	5 cut(s)	75, 195, 509, 894, 1057
BseGI	GGATG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	783, 878
BseNI	ACTGG	3 cut(s)	739, 790, 820
BseRI	GAGGAG	3 cut(s)	47, 333, 1083
BseX3I	CGGCCG	2 cut(s)	192, 279
BseXI	GCAGC	2 cut(s)	47, 1071
BseYI	CCCAGC	1 cut(s)	724
Bsh1285I	CGRYCG	2 cut(s)	195, 282
BshFI	GGCC	5 cut(s)	5, 194, 281, 419, 514
BsiEI	CGRYCG	2 cut(s)	195, 282
BsiHKAI	GWGCWC	1 cut(s)	170
BsiSI	CCGG	4 cut(s)	6, 278, 282, 912
BslFI	GGGAC	1 cut(s)	779
BsmAI	GTCTC	2 cut(s)	234, 699
BsmFI	GGGAC	1 cut(s)	779
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	5 cut(s)	5, 194, 281, 419, 514
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp1407I	TGTACA	1 cut(s)	579
BspACI	CCGC	5 cut(s)	63, 80, 315, 480, 542
BspANI	GGCC	5 cut(s)	5, 194, 281, 419, 514
BspCNI	CTCAG	2 cut(s)	782, 877
BspLI	GGNNCC	1 cut(s)	1075
BsrFI	RCCGGY	1 cut(s)	911
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	3 cut(s)	739, 790, 820
BssAI	RCCGGY	1 cut(s)	911
BssECI	CCNNGG	5 cut(s)	75, 195, 509, 894, 1057
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	2 cut(s)	509, 1057
Bst4CI	ACNGT	9 cut(s)	70, 211, 253, 436, 443, 451, 667, 745, 952
Bst6I	CTCTTC	1 cut(s)	508
BstACI	GRCGYC	1 cut(s)	27
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	2 cut(s)	170, 540
BstDEI	CTNAG	2 cut(s)	769, 864
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	538
BstMAI	GTCTC	2 cut(s)	234, 699
BstMCI	CGRYCG	2 cut(s)	195, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 169
BstNSI	RCATGY	3 cut(s)	21, 311, 722
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	47, 1071
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstZI	CGGCCG	2 cut(s)	192, 279
Bsu36I	CCTNAGG	1 cut(s)	864
BsuI	GTATCC	1 cut(s)	782
BsuRI	GGCC	5 cut(s)	5, 194, 281, 419, 514
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	101
BtsI	GCAGTG	2 cut(s)	802, 832
BtsIMutI	CAGTG	9 cut(s)	255, 448, 456, 663, 750, 783, 802, 832, 948
Cac8I	GCNNGC	2 cut(s)	170, 540
CaiI	CAGNNNCTG	1 cut(s)	464
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	1 cut(s)	911
Cfr13I	GGNCC	1 cut(s)	418
CseI	GACGC	2 cut(s)	16, 269
Csp6I	GTAC	3 cut(s)	325, 580, 967
CviAII	CATG	8 cut(s)	18, 22, 32, 126, 223, 308, 719, 889
CviQI	GTAC	3 cut(s)	325, 580, 967
DdeI	CTNAG	2 cut(s)	769, 864
DrdI	GACNNNNNNGTC	1 cut(s)	1037
DseDI	GACNNNNNNGTC	1 cut(s)	1037
EaeI	YGGCCR	3 cut(s)	3, 192, 279
EagI	CGGCCG	2 cut(s)	192, 279
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
EciI	GGCGGA	2 cut(s)	95, 330
EclXI	CGGCCG	2 cut(s)	192, 279
Eco130I	CCWWGG	2 cut(s)	509, 1057
Eco52I	CGGCCG	2 cut(s)	192, 279
Eco81I	CCTNAGG	1 cut(s)	864
EcoT14I	CCWWGG	2 cut(s)	509, 1057
EcoT22I	ATGCAT	1 cut(s)	23
ErhI	CCWWGG	2 cut(s)	509, 1057
FaeI	CATG	8 cut(s)	21, 25, 35, 129, 226, 311, 722, 892
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	8 cut(s)	17, 21, 31, 125, 222, 307, 718, 888
Fnu4HI	GCNGC	3 cut(s)	36, 480, 1085
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	3 cut(s)	36, 480, 1085
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	3 cut(s)	36, 480, 1085
GsaI	CCCAGC	1 cut(s)	728
HaeIII	GGCC	5 cut(s)	5, 194, 281, 419, 514
HapII	CCGG	4 cut(s)	6, 278, 282, 912
HgaI	GACGC	2 cut(s)	16, 269
HhaI	GCGC	1 cut(s)	538
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	8 cut(s)	21, 25, 35, 129, 226, 311, 722, 892
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HinfI	GANTC	3 cut(s)	343, 461, 767
HpaI	GTTAAC	1 cut(s)	904
HpaII	CCGG	4 cut(s)	6, 278, 282, 912
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	439, 802, 904
Hpy188I	TCNGA	3 cut(s)	106, 466, 778
Hpy188III	TCNNGA	2 cut(s)	247, 605
Hpy8I	GTNNAC	3 cut(s)	439, 802, 904
HpyAV	CCTTC	2 cut(s)	497, 653
HpyCH4III	ACNGT	9 cut(s)	70, 211, 253, 436, 443, 451, 667, 745, 952
HpyCH4IV	ACGT	2 cut(s)	295, 940
HpyCH4V	TGCA	9 cut(s)	21, 35, 226, 307, 458, 588, 718, 807, 975
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 169
HpyF3I	CTNAG	2 cut(s)	769, 864
HpySE526I	ACGT	2 cut(s)	295, 940
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	8 cut(s)	21, 25, 35, 129, 226, 311, 722, 892
HspAI	GCGC	1 cut(s)	536
KspAI	GTTAAC	1 cut(s)	904
LmnI	GCTCC	2 cut(s)	533, 918
Lsp1109I	GCAGC	2 cut(s)	47, 1071
MaeII	ACGT	2 cut(s)	295, 940
MaeIII	GTNAC	4 cut(s)	187, 253, 364, 941
MboII	GAAGA	1 cut(s)	495
MfeI	CAATTG	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	7 cut(s)	42, 51, 336, 397, 568, 583, 1009
MlyI	GAGTC	1 cut(s)	761
MmeI	TCCRAC	3 cut(s)	129, 577, 896
MnlI	CCTC	9 cut(s)	68, 190, 311, 546, 772, 873, 889, 1101, 1104
Mph1103I	ATGCAT	1 cut(s)	23
MseI	TTAA	3 cut(s)	267, 495, 903
MslI	CAYNNNNRTG	2 cut(s)	20, 887
MspI	CCGG	4 cut(s)	6, 278, 282, 912
MspR9I	CCNGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	583
Mva1269I	GAATGC	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	71, 169
NciI	CCSGG	1 cut(s)	283
NlaIII	CATG	8 cut(s)	21, 25, 35, 129, 226, 311, 722, 892
NlaIV	GGNNCC	1 cut(s)	1075
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	4 cut(s)	187, 253, 364, 941
NsiI	ATGCAT	1 cut(s)	23
NspI	RCATGY	3 cut(s)	21, 311, 722
PctI	GAATGC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	343, 461
PkrI	GCNGC	3 cut(s)	37, 481, 1086
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
PshBI	ATTAAT	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	724
PspN4I	GGNNCC	1 cut(s)	1075
PspPI	GGNCC	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	464
RsaI	GTAC	3 cut(s)	326, 581, 968
RsaNI	GTAC	3 cut(s)	325, 580, 967
RseI	CAYNNNNRTG	2 cut(s)	20, 887
SaqAI	TTAA	3 cut(s)	267, 495, 903
SatI	GCNGC	3 cut(s)	36, 480, 1085
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	1 cut(s)	761
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	2 cut(s)	20, 887
Sse9I	AATT	7 cut(s)	42, 51, 336, 397, 568, 583, 1009
SsiI	CCGC	5 cut(s)	63, 80, 315, 480, 542
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	2 cut(s)	509, 1057
TaaI	ACNGT	9 cut(s)	70, 211, 253, 436, 443, 451, 667, 745, 952
TaiI	ACGT	2 cut(s)	298, 943
TaqI	TCGA	1 cut(s)	132
TaqII	GACCGA	1 cut(s)	908
TasI	AATT	7 cut(s)	42, 51, 336, 397, 568, 583, 1009
TatI	WGTACW	3 cut(s)	324, 579, 966
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	343, 461
Tru1I	TTAA	3 cut(s)	267, 495, 903
Tru9I	TTAA	3 cut(s)	267, 495, 903
TscAI	CASTG	9 cut(s)	262, 448, 456, 670, 750, 790, 809, 832, 955
TseFI	GTSAC	4 cut(s)	187, 253, 364, 941
TseI	GCWGC	2 cut(s)	35, 1084
Tsp45I	GTSAC	4 cut(s)	187, 253, 364, 941
TspDTI	ATGAA	2 cut(s)	664, 1039
TspGWI	ACGGA	1 cut(s)	975
TspRI	CASTG	9 cut(s)	262, 448, 456, 670, 750, 790, 809, 832, 955
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	2 cut(s)	397, 1009
XceI	RCATGY	3 cut(s)	21, 311, 722
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.