Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

48094518 .. 48095836

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG347700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCCATAAGAGAGAAATGGTTGGGCATCCATGCAGCTCTGATGATAATCACGAAGATTCTCCTTGCTGCTACCGTTTCCATGGCAGATGATGCAGTCATACCAGCCGAAAAATCCGGACTGGACAAGTGGTTCAAAGACAATGTGAAGCCGTTGGCAGAACAGAAGTCCTCGCTTGACCCTGCCCTTGTCAAGGCGGAGGAGGGTGATGCCAAAGTTGTGAAGGTCATGCAAAATGGGGGAGACTACAAGAAAATCTCGGAGGCCATTGATAGCATTCCGGCCGGGAACACTAAACGTGTGACTATATACATTGGAGGGGGTACATACAATGAGAAAATAACAATTCCAAAAAATAAATCATTTGTCACATTTTTTGGGGATTCACAAAACATGCCGAATTTGACATATGATGGTGATGCCGCCAAGCATAATGGGACGCTTTATAGTGCTACATTGACGGTGGAATCCGACTACTTCATTGGGGTTAACTTAAACATCATAAATACCTCGCCTAGGCCGGATGGGAAAAAAGAGGGTGCACAAGCAGTTGCCTTGAGGGTATTCGGGACCAAGGCCGCATTGTACAATTGCAAAATGTTTGGATTTCAGGACACCCTTTGTGATGATCAAGGCTATCATTTCTTCAAGGATTGCTACGTTGAAGGAACTGTAGATTTCATCTTCGGAAGAGGAAAATCTCTCTATCTGAACACACATTTACATGTGCTAGGGGACAACGGAATGACGGTGATAACGGCACAGGCAAGGGAAGGTGATGAGGACAACGGATACTCATTTGTTCACTGCAACATAACCGGGACCGGCAATGGCACATATTTGGGCAGGGCTTGGAGAGCTGCTCCCAAGGTGTTGTTTGCCTACACCAACATGGGAGAAGTTGTCAAGCCAGAAGGATGGACTGACAATTTCCACCCCGAATATGACAACAAAGTTCAATTTGGAGAGTACAAGAATACTGGTACGTCCAGGTTCAAGCATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

335

Amino Acids

36.92

Weight (kDa)

6.26

Isoelectric Point (pI)

18.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	77 - 330	7.9e-53	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	116
AciI	CCGC	3 cut(s)	197, 423, 579
AcoI	YGGCCR	2 cut(s)	3, 282
AcsI	RAATTY	1 cut(s)	400
AfaI	GTAC	4 cut(s)	325, 587, 971, 985
AfiI	CCNNNNNNNGG	2 cut(s)	193, 516
AflIII	ACRYGT	2 cut(s)	298, 724
AgsI	TTSAA	5 cut(s)	136, 649, 665, 959, 997
AjnI	CCWGG	1 cut(s)	989
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
AluBI	AGCT	2 cut(s)	38, 860
AluI	AGCT	2 cut(s)	38, 860
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	1 cut(s)	237
Alw44I	GTGCAC	1 cut(s)	540
Aor13HI	TCCGGA	1 cut(s)	116
AoxI	GGCC	5 cut(s)	3, 264, 282, 518, 576
ApaLI	GTGCAC	1 cut(s)	540
ApeKI	GCWGC	3 cut(s)	35, 68, 860
ApoI	RAATTY	1 cut(s)	400
AspA2I	CCTAGG	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	570, 822
AsuC2I	CCSGG	2 cut(s)	286, 820
AsuHPI	GGTGA	4 cut(s)	218, 428, 763, 788
AvaII	GGWCC	2 cut(s)	570, 822
AvrII	CCTAGG	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	3 cut(s)	47, 55, 847
BccI	CCATC	3 cut(s)	407, 518, 912
BceAI	ACGGC	2 cut(s)	136, 774
BciT130I	CCWGG	1 cut(s)	991
BciVI	GTATCC	1 cut(s)	785
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	2 cut(s)	286, 820
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	2 cut(s)	516, 731
BfmI	CTRYAG	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	785
BisI	GCNGC	5 cut(s)	36, 69, 423, 579, 861
BlnI	CCTAGG	1 cut(s)	515
BlsI	GCNGC	5 cut(s)	37, 70, 424, 580, 862
Bme1390I	CCNGG	3 cut(s)	286, 820, 991
Bme18I	GGWCC	2 cut(s)	570, 822
BmgT120I	GGNCC	2 cut(s)	570, 822
BmiI	GGNNCC	2 cut(s)	571, 823
BmrFI	CCNGG	3 cut(s)	286, 820, 991
BmsI	GCATC	4 cut(s)	36, 82, 199, 409
BplI	GAGNNNNNCTC	2 cut(s)	847, 879
BpuEI	CTTGAG	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	286, 820
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	81, 515, 573, 867
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 516
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	2 cut(s)	126, 985
Bse3DI	GCAATG	1 cut(s)	835
Bse8I	GATNNNNATC	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	991
BseDI	CCNNGG	4 cut(s)	81, 515, 573, 867
BseGI	GGATG	3 cut(s)	27, 529, 923
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	193, 516
BseMI	GCAATG	1 cut(s)	835
BseNI	ACTGG	2 cut(s)	126, 985
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	544
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	3 cut(s)	47, 55, 847
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	5 cut(s)	5, 266, 284, 520, 578
BsiEI	CGRYCG	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	544
BsiSI	CCGG	6 cut(s)	117, 281, 285, 521, 819, 825
BslFI	GGGAC	4 cut(s)	451, 583, 749, 835
BslI	CCNNNNNNNGG	2 cut(s)	193, 516
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	4 cut(s)	451, 583, 749, 835
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	5 cut(s)	5, 266, 284, 520, 578
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp13I	TCCGGA	1 cut(s)	116
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	1 cut(s)	628
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	3 cut(s)	197, 423, 579
BspANI	GGCC	5 cut(s)	5, 266, 284, 520, 578
BspEI	TCCGGA	1 cut(s)	116
BspLI	GGNNCC	2 cut(s)	571, 823
BsrDI	GCAATG	1 cut(s)	835
BsrFI	RCCGGY	1 cut(s)	824
BsrGI	TGTACA	1 cut(s)	585
BsrI	ACTGG	2 cut(s)	126, 985
BssAI	RCCGGY	1 cut(s)	824
BssECI	CCNNGG	4 cut(s)	81, 515, 573, 867
BssMI	GATC	1 cut(s)	628
BssT1I	CCWWGG	4 cut(s)	81, 515, 573, 867
Bst2UI	CCWGG	1 cut(s)	991
Bst4CI	ACNGT	4 cut(s)	76, 463, 673, 751
Bst6I	CTCTTC	1 cut(s)	685
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	585
BstDSI	CCRYGG	1 cut(s)	81
BstENI	CCTNNNNNAGG	2 cut(s)	191, 514
BstF5I	GGATG	3 cut(s)	27, 529, 923
BstKTI	GATC	1 cut(s)	631
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	628
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 857
BstNI	CCWGG	1 cut(s)	991
BstNSI	RCATGY	2 cut(s)	397, 728
BstSCI	CCNGG	3 cut(s)	284, 818, 989
BstSFI	CTRYAG	1 cut(s)	672
BstSLI	GKGCMC	1 cut(s)	544
BstV1I	GCAGC	3 cut(s)	47, 55, 847
BstXI	CCANNNNNNTGG	1 cut(s)	918
BstZI	CGGCCG	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	785
BsuRI	GGCC	5 cut(s)	5, 266, 284, 520, 578
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	3 cut(s)	27, 529, 923
BtsI	GCAGTG	1 cut(s)	805
BtsIMutI	CAGTG	1 cut(s)	805
Cfr10I	RCCGGY	1 cut(s)	824
Cfr13I	GGNCC	2 cut(s)	570, 822
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	4 cut(s)	324, 586, 970, 984
CviAII	CATG	7 cut(s)	32, 82, 229, 394, 725, 892, 1001
CviQI	GTAC	4 cut(s)	324, 586, 970, 984
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
EaeI	YGGCCR	2 cut(s)	3, 282
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	685
EarI	CTCTTC	1 cut(s)	685
EciI	GGCGGA	1 cut(s)	212
EclXI	CGGCCG	1 cut(s)	282
Eco130I	CCWWGG	4 cut(s)	81, 515, 573, 867
Eco47I	GGWCC	2 cut(s)	570, 822
Eco52I	CGGCCG	1 cut(s)	282
EcoNI	CCTNNNNNAGG	2 cut(s)	191, 514
EcoRII	CCWGG	1 cut(s)	989
EcoT14I	CCWWGG	4 cut(s)	81, 515, 573, 867
ErhI	CCWWGG	4 cut(s)	81, 515, 573, 867
FaeI	CATG	7 cut(s)	35, 85, 232, 397, 728, 895, 1004
FaqI	GGGAC	4 cut(s)	451, 583, 749, 835
FatI	CATG	7 cut(s)	31, 81, 228, 393, 724, 891, 1000
FauNDI	CATATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	5 cut(s)	36, 69, 423, 579, 861
FokI	GGATG	3 cut(s)	14, 536, 930
Fsp4HI	GCNGC	5 cut(s)	36, 69, 423, 579, 861
FspBI	CTAG	2 cut(s)	516, 731
GluI	GCNGC	5 cut(s)	36, 69, 423, 579, 861
HaeIII	GGCC	5 cut(s)	5, 266, 284, 520, 578
HapII	CCGG	6 cut(s)	117, 281, 285, 521, 819, 825
HgaI	GACGC	1 cut(s)	448
Hin1II	CATG	7 cut(s)	35, 85, 232, 397, 728, 895, 1004
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	58, 383, 467
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	6 cut(s)	117, 281, 285, 521, 819, 825
HphI	GGTGA	4 cut(s)	218, 428, 763, 788
Hpy166II	GTNNAC	3 cut(s)	490, 542, 805
Hpy188I	TCNGA	5 cut(s)	42, 262, 472, 689, 711
Hpy188III	TCNNGA	4 cut(s)	52, 117, 568, 611
Hpy8I	GTNNAC	3 cut(s)	490, 542, 805
HpyAV	CCTTC	4 cut(s)	217, 659, 767, 908
HpyCH4III	ACNGT	4 cut(s)	76, 463, 673, 751
HpyCH4IV	ACGT	3 cut(s)	298, 660, 986
HpyCH4V	TGCA	6 cut(s)	35, 95, 232, 542, 594, 810
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 857
HpySE526I	ACGT	3 cut(s)	298, 660, 986
Hsp92II	CATG	7 cut(s)	35, 85, 232, 397, 728, 895, 1004
Kpn2I	TCCGGA	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	628
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	1 cut(s)	868
Lsp1109I	GCAGC	3 cut(s)	47, 55, 847
LweI	GCATC	4 cut(s)	36, 82, 199, 409
MaeI	CTAG	2 cut(s)	516, 731
MaeII	ACGT	3 cut(s)	298, 660, 986
MaeIII	GTNAC	2 cut(s)	301, 367
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	4 cut(s)	67, 637, 676, 702
MfeI	CAATTG	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	544
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	345, 400, 589, 928, 959
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	495
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	489, 494
MslI	CAYNNNNRTG	2 cut(s)	723, 890
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	117, 281, 285, 521, 819, 825
MspR9I	CCNGG	3 cut(s)	286, 820, 991
MunI	CAATTG	1 cut(s)	589
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	991
MwoI	GCNNNNNNNGC	2 cut(s)	92, 857
NciI	CCSGG	2 cut(s)	286, 820
NcoI	CCATGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	1 cut(s)	628
NlaIII	CATG	7 cut(s)	35, 85, 232, 397, 728, 895, 1004
NlaIV	GGNNCC	2 cut(s)	571, 823
NmuCI	GTSAC	2 cut(s)	301, 367
NspI	RCATGY	2 cut(s)	397, 728
PciI	ACATGT	1 cut(s)	724
PctI	GAATGC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	58, 383, 467
PkrI	GCNGC	5 cut(s)	37, 70, 424, 580, 862
PscI	ACATGT	1 cut(s)	724
Psp6I	CCWGG	1 cut(s)	989
PspGI	CCWGG	1 cut(s)	989
PspN4I	GGNNCC	2 cut(s)	571, 823
PspPI	GGNCC	2 cut(s)	570, 822
RsaI	GTAC	4 cut(s)	325, 587, 971, 985
RsaNI	GTAC	4 cut(s)	324, 586, 970, 984
RseI	CAYNNNNRTG	2 cut(s)	723, 890
SaqAI	TTAA	2 cut(s)	489, 494
SatI	GCNGC	5 cut(s)	36, 69, 423, 579, 861
Sau3AI	GATC	1 cut(s)	628
Sau96I	GGNCC	2 cut(s)	570, 822
ScrFI	CCNGG	3 cut(s)	286, 820, 991
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	4 cut(s)	36, 82, 199, 409
SfcI	CTRYAG	1 cut(s)	672
SinI	GGWCC	2 cut(s)	570, 822
SmiMI	CAYNNNNRTG	2 cut(s)	723, 890
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	5 cut(s)	345, 400, 589, 928, 959
SsiI	CCGC	3 cut(s)	197, 423, 579
SspMI	CTAG	2 cut(s)	516, 731
StyD4I	CCNGG	3 cut(s)	284, 818, 989
StyI	CCWWGG	4 cut(s)	81, 515, 573, 867
TaaI	ACNGT	4 cut(s)	76, 463, 673, 751
TaiI	ACGT	3 cut(s)	301, 663, 989
TasI	AATT	5 cut(s)	345, 400, 589, 928, 959
TatI	WGTACW	2 cut(s)	585, 969
TauI	GCSGC	2 cut(s)	425, 581
TfiI	GAWTC	3 cut(s)	58, 383, 467
Tru1I	TTAA	2 cut(s)	489, 494
Tru9I	TTAA	2 cut(s)	489, 494
TscAI	CASTG	1 cut(s)	812
TseFI	GTSAC	2 cut(s)	301, 367
TseI	GCWGC	3 cut(s)	35, 68, 860
Tsp45I	GTSAC	2 cut(s)	301, 367
TspDTI	ATGAA	2 cut(s)	469, 670
TspGWI	ACGGA	2 cut(s)	756, 804
TspRI	CASTG	1 cut(s)	812
VneI	GTGCAC	1 cut(s)	540
VpaK11BI	GGWCC	2 cut(s)	570, 822
XagI	CCTNNNNNAGG	2 cut(s)	191, 514
XapI	RAATTY	1 cut(s)	400
XceI	RCATGY	2 cut(s)	397, 728
XmaJI	CCTAGG	1 cut(s)	515
XspI	CTAG	2 cut(s)	516, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.