MD01G1173200.v1.1

Pectinesterase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
27502676 .. 27504570
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1173200.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGGTCGTCCATGCAGCTTTAATCATGACAATTCTCCTCTCTGCCACCATTGCCATGGCGGACGACAATACACCGGTACCAGCCGCCCTTTCCCAAGTCAACACGTGGTTCAATAACAATGTGAAGCCGTACACACAGCGGCAGAAAACGCTTGACCCTGCCGTTGTGACGGCCGAGGCTGGTCAAAAAGTCATCAAGGTCATGCAAGATGGAAAAGGAAACTTCAAGACCGTCACCGACGCCATTAATAGCATTCCGGCCGGGAATACCAAACGTGTCATTGTGTACATTGGATCAGGAGAGTACAAAGAAAAAATTACGATTCCGCGAAATAAACCATTTGTCACATTATATGGTTCTCCAACGAATATGCCAATTTTGACATTTGATGGCACGGCCCAGAAGTATGGAACTGTAAACAGTGCTACAGTGATCGCAGAATCCGATTACTTTGTTGCTGCTAATCTTATTATTAAAAACTCTTCACCAAGGCCAGATGGGAAAAGAGTGGGAGCGCAGGCAGTGGCATTGAGGGTGTCGGGGAACAAAGCAGCCTTGTACAATTGCAAGCTGTTTGGGTTTCAGGACACCCTTTGTGATGACAGGGGCAATCATTTGTTCAAGGACTGCTACATTGAAGGCACTGTGGATTTCATTTGGGGAAGTGGAAAGTCTCTCTATTTGAACACTGAGTTGCATGTGCTGGGGGATAATGGAATAACGGTGATAACAGCACAGGCAAGGGACTCAGATTCGGAGGACACTGGATACTCATTTGTTCACTGCAAGATAACTGGGACAGGCATTGGCACATACTTGGGAAGGGCTTGGAGGGCCAGACCCCAGGTGGTGTATGCATACACCAACATGACCAAGGTGGTAAACCCTGCCGGATGGAGCAACGATAACCACTCTGAACGCGACAAAACTGTGTCCTACGGAGAGTACAAGTGCATGGGTCCAGGTTCAAGTAAGAATAATAAGAGAAATTTGAGCAAAGAGCTGACTGACGAACAAGCCAAGCGTTTCATTAGCCTTGGCTATATTCAGGGTTCCAAATGGCTGCTTCCTCCTCCAAATCCAAAAGTGTAG

Protein Analysis

364

Amino Acids

39.7

Weight (kDa)

9.2

Isoelectric Point (pI)

21.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 66 - 351 2e-60 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 76
AccB1I GGYRCC 1 cut(s) 76
AccII CGCG 2 cut(s) 328, 921
AciI CCGC 4 cut(s) 59, 84, 139, 326
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 2 cut(s) 171, 258
AcsI RAATTY 1 cut(s) 988
AcvI CACGTG 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 6 cut(s) 78, 131, 287, 305, 560, 947
AflIII ACRYGT 2 cut(s) 102, 274
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 6 cut(s) 112, 226, 622, 638, 685, 969
AjnI CCWGG 2 cut(s) 843, 961
AluBI AGCT 3 cut(s) 17, 571, 1003
AluI AGCT 3 cut(s) 17, 571, 1003
Alw26I GTCTC 1 cut(s) 678
AlwI GGATC 1 cut(s) 301
AoxI GGCC 5 cut(s) 171, 258, 396, 491, 834
ApeKI GCWGC 4 cut(s) 14, 458, 551, 1063
ApoI RAATTY 1 cut(s) 988
AseI ATTAAT 1 cut(s) 246
AsiGI ACCGGT 1 cut(s) 73
Asp718I GGTACC 1 cut(s) 76
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 3 cut(s) 397, 834, 959
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 3 cut(s) 226, 477, 736
AvaII GGWCC 1 cut(s) 959
BaeI ACNNNNGTAYC 2 cut(s) 60, 93
BanI GGYRCC 1 cut(s) 76
BbrPI CACGTG 1 cut(s) 105
BbvI GCAGC 4 cut(s) 26, 445, 563, 1050
BccI CCATC 4 cut(s) 203, 383, 491, 888
BceAI ACGGC 4 cut(s) 112, 146, 186, 411
BciT130I CCWGG 2 cut(s) 845, 963
BciVI GTATCC 1 cut(s) 761
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 678
BfmI CTRYAG 1 cut(s) 426
BfuI GTATCC 1 cut(s) 761
BisI GCNGC 6 cut(s) 15, 84, 140, 459, 552, 1064
BlsI GCNGC 6 cut(s) 16, 85, 141, 460, 553, 1065
Bme1390I CCNGG 3 cut(s) 262, 845, 963
Bme18I GGWCC 1 cut(s) 959
BmgT120I GGNCC 3 cut(s) 397, 834, 959
BmiI GGNNCC 3 cut(s) 78, 960, 1054
BmrFI CCNGG 3 cut(s) 262, 845, 963
BmrI ACTGGG 1 cut(s) 804
BmuI ACTGGG 1 cut(s) 804
BpuMI CCSGG 1 cut(s) 262
BsaAI YACGTR 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 6 cut(s) 54, 174, 488, 843, 873, 1036
BsaWI WCCGGW 1 cut(s) 73
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 769, 799
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 2 cut(s) 845, 963
BseDI CCNNGG 6 cut(s) 54, 174, 488, 843, 873, 1036
BseGI GGATG 1 cut(s) 899
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 681, 762
BseNI ACTGG 2 cut(s) 769, 799
BseRI GAGGAG 2 cut(s) 26, 1062
BseX3I CGGCCG 2 cut(s) 171, 258
BseXI GCAGC 4 cut(s) 26, 445, 563, 1050
BseYI CCCAGC 1 cut(s) 703
Bsh1236I CGCG 2 cut(s) 328, 921
Bsh1285I CGRYCG 2 cut(s) 174, 261
BshFI GGCC 5 cut(s) 173, 260, 398, 493, 836
BshNI GGYRCC 1 cut(s) 76
BshTI ACCGGT 1 cut(s) 73
BsiEI CGRYCG 2 cut(s) 174, 261
BsiSI CCGG 4 cut(s) 74, 257, 261, 891
BslFI GGGAC 2 cut(s) 758, 811
BsmAI GTCTC 1 cut(s) 678
BsmFI GGGAC 2 cut(s) 758, 811
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 5 cut(s) 173, 260, 398, 493, 836
Bsp1407I TGTACA 2 cut(s) 285, 558
Bsp143I GATC 2 cut(s) 293, 432
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 4 cut(s) 59, 84, 139, 326
BspANI GGCC 5 cut(s) 173, 260, 398, 493, 836
BspCNI CTCAG 2 cut(s) 682, 761
BspFNI CGCG 2 cut(s) 328, 921
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 3 cut(s) 78, 960, 1054
BspPI GGATC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 73
BsrGI TGTACA 2 cut(s) 285, 558
BsrI ACTGG 2 cut(s) 769, 799
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 6 cut(s) 54, 174, 488, 843, 873, 1036
BssMI GATC 2 cut(s) 293, 432
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 4 cut(s) 54, 488, 873, 1036
Bst2UI CCWGG 2 cut(s) 845, 963
Bst4CI ACNGT 7 cut(s) 232, 415, 422, 430, 646, 724, 931
Bst6I CTCTTC 1 cut(s) 487
BstACI GRCGYC 1 cut(s) 240
BstAUI TGTACA 2 cut(s) 285, 558
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 519, 569
BstDEI CTNAG 2 cut(s) 690, 748
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 899
BstFNI CGCG 2 cut(s) 328, 921
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 2 cut(s) 296, 435
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 2 cut(s) 293, 432
BstMCI CGRYCG 2 cut(s) 174, 261
BstMWI GCNNNNNNNGC 3 cut(s) 50, 148, 833
BstNI CCWGG 2 cut(s) 845, 963
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 3 cut(s) 260, 843, 961
BstSFI CTRYAG 1 cut(s) 426
BstUI CGCG 2 cut(s) 328, 921
BstV1I GCAGC 4 cut(s) 26, 445, 563, 1050
BstXI CCANNNNNNTGG 2 cut(s) 55, 407
BstZI CGGCCG 2 cut(s) 171, 258
BsuI GTATCC 1 cut(s) 761
BsuRI GGCC 5 cut(s) 173, 260, 398, 493, 836
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 899
BtsI GCAGTG 2 cut(s) 528, 781
BtsIMutI CAGTG 7 cut(s) 427, 435, 528, 642, 687, 762, 781
Cac8I GCNNGC 2 cut(s) 519, 569
CciI TCATGA 1 cut(s) 24
CfoI GCGC 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 3 cut(s) 397, 834, 959
CseI GACGC 1 cut(s) 248
Csp6I GTAC 6 cut(s) 77, 130, 286, 304, 559, 946
CspAI ACCGGT 1 cut(s) 73
CviAII CATG 7 cut(s) 11, 25, 55, 202, 698, 868, 955
CviQI GTAC 6 cut(s) 77, 130, 286, 304, 559, 946
DdeI CTNAG 2 cut(s) 690, 748
DpnI GATC 2 cut(s) 295, 434
DpnII GATC 2 cut(s) 293, 432
EaeI YGGCCR 2 cut(s) 171, 258
EagI CGGCCG 2 cut(s) 171, 258
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
EciI GGCGGA 1 cut(s) 74
EclXI CGGCCG 2 cut(s) 171, 258
Eco130I CCWWGG 4 cut(s) 54, 488, 873, 1036
Eco47I GGWCC 1 cut(s) 959
Eco52I CGGCCG 2 cut(s) 171, 258
Eco72I CACGTG 1 cut(s) 105
EcoRII CCWGG 2 cut(s) 843, 961
EcoT14I CCWWGG 4 cut(s) 54, 488, 873, 1036
EcoT22I ATGCAT 1 cut(s) 859
ErhI CCWWGG 4 cut(s) 54, 488, 873, 1036
FaeI CATG 7 cut(s) 14, 28, 58, 205, 701, 871, 958
FaqI GGGAC 2 cut(s) 758, 811
FatI CATG 7 cut(s) 10, 24, 54, 201, 697, 867, 954
Fnu4HI GCNGC 6 cut(s) 15, 84, 140, 459, 552, 1064
FokI GGATG 1 cut(s) 906
Fsp4HI GCNGC 6 cut(s) 15, 84, 140, 459, 552, 1064
GlaI GCGC 1 cut(s) 516
GluI GCNGC 6 cut(s) 15, 84, 140, 459, 552, 1064
GsaI CCCAGC 1 cut(s) 707
HaeIII GGCC 5 cut(s) 173, 260, 398, 493, 836
HapII CCGG 4 cut(s) 74, 257, 261, 891
HgaI GACGC 1 cut(s) 248
HhaI GCGC 1 cut(s) 517
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 7 cut(s) 14, 28, 58, 205, 701, 871, 958
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 4 cut(s) 322, 440, 746, 752
HpaII CCGG 4 cut(s) 74, 257, 261, 891
HphI GGTGA 3 cut(s) 226, 477, 736
Hpy166II GTNNAC 6 cut(s) 100, 132, 286, 418, 781, 883
Hpy188I TCNGA 4 cut(s) 445, 751, 757, 916
Hpy188III TCNNGA 4 cut(s) 25, 226, 297, 584
Hpy8I GTNNAC 6 cut(s) 100, 132, 286, 418, 781, 883
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 632, 816
HpyCH4III ACNGT 7 cut(s) 232, 415, 422, 430, 646, 724, 931
HpyCH4IV ACGT 2 cut(s) 104, 274
HpyCH4V TGCA 7 cut(s) 14, 205, 567, 697, 786, 857, 954
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 148, 833
HpyF3I CTNAG 2 cut(s) 690, 748
HpySE526I ACGT 2 cut(s) 104, 274
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 7 cut(s) 14, 28, 58, 205, 701, 871, 958
HspAI GCGC 1 cut(s) 515
KpnI GGTACC 1 cut(s) 80
Kzo9I GATC 2 cut(s) 293, 432
LmnI GCTCC 2 cut(s) 512, 897
Lsp1109I GCAGC 4 cut(s) 26, 445, 563, 1050
MaeII ACGT 2 cut(s) 104, 274
MaeIII GTNAC 3 cut(s) 166, 232, 343
MalI GATC 2 cut(s) 295, 434
MboI GATC 2 cut(s) 293, 432
MboII GAAGA 1 cut(s) 474
MfeI CAATTG 1 cut(s) 562
MluCI AATT 5 cut(s) 30, 315, 375, 562, 988
MlyI GAGTC 1 cut(s) 740
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 7 cut(s) 47, 169, 525, 751, 825, 1080, 1083
Mph1103I ATGCAT 1 cut(s) 859
MseI TTAA 3 cut(s) 20, 246, 474
MslI CAYNNNNRTG 2 cut(s) 53, 866
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 4 cut(s) 74, 257, 261, 891
MspR9I CCNGG 3 cut(s) 262, 845, 963
MunI CAATTG 1 cut(s) 562
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 2 cut(s) 845, 963
MvnI CGCG 2 cut(s) 328, 921
MwoI GCNNNNNNNGC 3 cut(s) 50, 148, 833
NciI CCSGG 1 cut(s) 262
NcoI CCATGG 1 cut(s) 54
NdeII GATC 2 cut(s) 293, 432
NlaIII CATG 7 cut(s) 14, 28, 58, 205, 701, 871, 958
NlaIV GGNNCC 3 cut(s) 78, 960, 1054
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 3 cut(s) 166, 232, 343
NsiI ATGCAT 1 cut(s) 859
NspI RCATGY 1 cut(s) 701
PagI TCATGA 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PctI GAATGC 1 cut(s) 252
PfeI GAWTC 3 cut(s) 322, 440, 752
PinAI ACCGGT 1 cut(s) 73
PkrI GCNGC 6 cut(s) 16, 85, 141, 460, 553, 1065
PleI GAGTC 1 cut(s) 740
PmaCI CACGTG 1 cut(s) 105
PmlI CACGTG 1 cut(s) 105
PpsI GAGTC 1 cut(s) 740
Ppu21I YACGTR 1 cut(s) 105
PshBI ATTAAT 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 843, 961
PspCI CACGTG 1 cut(s) 105
PspFI CCCAGC 1 cut(s) 703
PspGI CCWGG 2 cut(s) 843, 961
PspN4I GGNNCC 3 cut(s) 78, 960, 1054
PspPI GGNCC 3 cut(s) 397, 834, 959
RsaI GTAC 6 cut(s) 78, 131, 287, 305, 560, 947
RsaNI GTAC 6 cut(s) 77, 130, 286, 304, 559, 946
RseI CAYNNNNRTG 2 cut(s) 53, 866
SaqAI TTAA 3 cut(s) 20, 246, 474
SatI GCNGC 6 cut(s) 15, 84, 140, 459, 552, 1064
Sau3AI GATC 2 cut(s) 293, 432
Sau96I GGNCC 3 cut(s) 397, 834, 959
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 3 cut(s) 262, 845, 963
SetI ASST 9 cut(s) 19, 107, 201, 277, 573, 849, 879, 967, 1005
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 959
SmiMI CAYNNNNRTG 2 cut(s) 53, 866
Sse9I AATT 5 cut(s) 30, 315, 375, 562, 988
SsiI CCGC 4 cut(s) 59, 84, 139, 326
StyD4I CCNGG 3 cut(s) 260, 843, 961
StyI CCWWGG 4 cut(s) 54, 488, 873, 1036
TaaI ACNGT 7 cut(s) 232, 415, 422, 430, 646, 724, 931
TaiI ACGT 2 cut(s) 107, 277
TasI AATT 5 cut(s) 30, 315, 375, 562, 988
TatI WGTACW 4 cut(s) 285, 303, 558, 945
TauI GCSGC 2 cut(s) 86, 142
TfiI GAWTC 3 cut(s) 322, 440, 752
Tru1I TTAA 3 cut(s) 20, 246, 474
Tru9I TTAA 3 cut(s) 20, 246, 474
TscAI CASTG 7 cut(s) 427, 435, 528, 649, 694, 769, 788
TseFI GTSAC 3 cut(s) 166, 232, 343
TseI GCWGC 4 cut(s) 14, 458, 551, 1063
Tsp45I GTSAC 3 cut(s) 166, 232, 343
TspDTI ATGAA 2 cut(s) 643, 1018
TspGWI ACGGA 1 cut(s) 954
TspRI CASTG 7 cut(s) 427, 435, 528, 649, 694, 769, 788
VpaK11BI GGWCC 1 cut(s) 959
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 1 cut(s) 988
XceI RCATGY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 2 cut(s) 52, 844
Zsp2I ATGCAT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.