Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_51

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

506 .. 2109

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I005000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCCGGAAAAAACACATGCTTTGGTGTCCATGCAGCTCTAACCATGACATTATTAATTCTCCCCACCGCCATTATAGCTGTGGCAGATGATGATACACCAGTACCAGCCGACCACTCCCAAGTCAACACGTGGTTCAATAACAACGTGAATCCGTACAAAGAACGGCAAGGCACGCTTGACCCTACCCTTGTAACGGATGAGGTTGGTCAAACCGTCATCAAGGTTATGAAAGATGGAAGTGGAGAATTCAAGACCATCACTGACGCCGTTAATAGCATTCCGACCAACAACACCAAACATGTCATTGTGTACATTGGAGGGGGAGAGTACAATGAGAAAATCACAATTCCACGGAATAAACCATTTATTACATTTTATGGCTCTCCAACAAATATGCCAACTTTGACCTTTGCTGGCACAGCCCAAAAGTATGGAACTGTGGACAGCGCCACAGTGATTGTTGAATCTGACTACTTCGTGGCAGCTAACTTTATTATTAAGGCATTGGCATTGAGGGTGTTGGGGAACAAGTCAGCCTTGTTCAATTGCAGGCTGATTGGTTTCCAGGACACACTTTGTGATGACAAGGGCAATTATTTTTTCAAGGACTGCTTTATTGAAGGCACTGTGGATTTCATCTTTGGAAGTGGAAAGTCTCTCTATTTGAACACTGAGTTACATGTGCTAGGGAATAATGAAATGACAGTGATAACAACACAAGCAAGGGACTCGGCTTCAGAGGATACTGGATACTCATTTCTCTACTGCAACATAACTGGGACTGGAAATGGCACGTATTTGGGCAGGGCTTGGAGGACCAGTCCCAGGGTGGTCTTTGCCTACACCAGCATGTCCGAGGTCATCACCTCAGCCGGCTGGAACGACAAGAACCGCCCCGAACAATACAAGTGTTCGGGTCCAGGTTCAAGTATGGTTGGGAGAGTAAAATACACCAAACAGCTGAATGAGGAACAAATCAAACCTTTCCTCAGCCTGAGCTATATTCAGGGTTCCAAATGGCTGCTTCCTCCTCCAAATCCAAAAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

351

Amino Acids

38.42

Weight (kDa)

6.44

Isoelectric Point (pI)

21.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 895
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	723
AcvI	CACGTG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	267
AdeI	CACNNNGTG	1 cut(s)	581
AfaI	GTAC	4 cut(s)	105, 158, 314, 332
AfiI	CCNNNNNNNGG	2 cut(s)	196, 828
AflIII	ACRYGT	3 cut(s)	129, 301, 682
AgsI	TTSAA	8 cut(s)	139, 253, 467, 547, 607, 623, 670, 930
AjnI	CCWGG	3 cut(s)	567, 827, 922
AluBI	AGCT	5 cut(s)	38, 80, 488, 964, 1002
AluI	AGCT	5 cut(s)	38, 80, 488, 964, 1002
Alw26I	GTCTC	1 cut(s)	663
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	35, 485, 1024
ApoI	RAATTY	1 cut(s)	248
AseI	ATTAAT	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	819, 920
AsuHPI	GGTGA	1 cut(s)	859
AvaII	GGWCC	2 cut(s)	819, 920
BaeI	ACNNNNGTAYC	4 cut(s)	87, 87, 120, 120
BbrPI	CACGTG	1 cut(s)	132
BbvCI	CCTCAGC	2 cut(s)	871, 992
BbvI	GCAGC	3 cut(s)	47, 497, 1011
BccI	CCATC	2 cut(s)	230, 266
BceAI	ACGGC	2 cut(s)	182, 254
BcgI	CGANNNNNNTGC	2 cut(s)	714, 748
BciT130I	CCWGG	3 cut(s)	569, 829, 924
BciVI	GTATCC	2 cut(s)	739, 746
BcoDI	GTCTC	1 cut(s)	663
BfaI	CTAG	1 cut(s)	689
BfoI	RGCGCY	1 cut(s)	453
BfuI	GTATCC	2 cut(s)	739, 746
BisI	GCNGC	3 cut(s)	36, 486, 1025
BlsI	GCNGC	3 cut(s)	37, 487, 1026
Bme1390I	CCNGG	3 cut(s)	569, 829, 924
Bme18I	GGWCC	2 cut(s)	819, 920
BmgT120I	GGNCC	2 cut(s)	819, 920
BmiI	GGNNCC	2 cut(s)	921, 1015
BmrFI	CCNGG	3 cut(s)	569, 829, 924
BmrI	ACTGGG	1 cut(s)	789
BmuI	ACTGGG	1 cut(s)	789
Bpu10I	CCTNAGC	3 cut(s)	871, 992, 998
BsaAI	YACGTR	2 cut(s)	132, 798
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	4 cut(s)	353, 827, 828, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 828
Bse118I	RCCGGY	1 cut(s)	875
Bse1I	ACTGG	5 cut(s)	101, 754, 784, 790, 822
BseBI	CCWGG	3 cut(s)	569, 829, 924
BseDI	CCNNGG	4 cut(s)	353, 827, 828, 858
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	196, 828
BseMII	CTCAG	4 cut(s)	666, 885, 989, 1006
BseNI	ACTGG	5 cut(s)	101, 754, 784, 790, 822
BseRI	GAGGAG	1 cut(s)	1023
BseXI	GCAGC	3 cut(s)	47, 497, 1011
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	6, 876
BslFI	GGGAC	3 cut(s)	743, 796, 810
BslI	CCNNNNNNNGG	2 cut(s)	196, 828
BsmAI	GTCTC	1 cut(s)	663
BsmFI	GGGAC	3 cut(s)	743, 796, 810
BsmI	GAATGC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	312
BspACI	CCGC	2 cut(s)	69, 895
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	667, 884, 990, 1005
BspLI	GGNNCC	2 cut(s)	921, 1015
BsrFI	RCCGGY	1 cut(s)	875
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	5 cut(s)	101, 754, 784, 790, 822
BssAI	RCCGGY	1 cut(s)	875
BssECI	CCNNGG	4 cut(s)	353, 827, 828, 858
BssNI	GRCGYC	1 cut(s)	267
Bst2UI	CCWGG	3 cut(s)	569, 829, 924
Bst4CI	ACNGT	5 cut(s)	217, 442, 457, 631, 709
BstACI	GRCGYC	1 cut(s)	267
BstAUI	TGTACA	1 cut(s)	312
BstBAI	YACGTR	2 cut(s)	132, 798
BstC8I	GCNNGC	4 cut(s)	176, 418, 554, 877
BstDEI	CTNAG	4 cut(s)	675, 871, 992, 998
BstDSI	CCRYGG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	452
BstMAI	GTCTC	1 cut(s)	663
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 175, 422
BstNI	CCWGG	3 cut(s)	569, 829, 924
BstNSI	RCATGY	4 cut(s)	21, 305, 686, 856
BstSCI	CCNGG	3 cut(s)	567, 827, 922
BstV1I	GCAGC	3 cut(s)	47, 497, 1011
BstXI	CCANNNNNNTGG	1 cut(s)	434
BsuI	GTATCC	2 cut(s)	739, 746
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	5 cut(s)	261, 462, 627, 672, 714
Cac8I	GCNNGC	4 cut(s)	176, 418, 554, 877
CfoI	GCGC	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	875
Cfr13I	GGNCC	2 cut(s)	819, 920
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	4 cut(s)	104, 157, 313, 331
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviAII	CATG	6 cut(s)	18, 32, 46, 302, 683, 853
CviQI	GTAC	4 cut(s)	104, 157, 313, 331
DdeI	CTNAG	4 cut(s)	675, 871, 992, 998
DraIII	CACNNNGTG	1 cut(s)	581
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	2 cut(s)	819, 920
Eco57I	CTGAAG	1 cut(s)	723
Eco72I	CACGTG	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	3 cut(s)	567, 827, 922
FaeI	CATG	6 cut(s)	21, 35, 49, 305, 686, 856
FalI	AAGNNNNNCTT	6 cut(s)	162, 194, 524, 556, 599, 631
FaqI	GGGAC	3 cut(s)	743, 796, 810
FatI	CATG	6 cut(s)	17, 31, 45, 301, 682, 852
Fnu4HI	GCNGC	3 cut(s)	36, 486, 1025
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	36, 486, 1025
FspBI	CTAG	1 cut(s)	689
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	3 cut(s)	36, 486, 1025
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	6, 876
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	6 cut(s)	21, 35, 49, 305, 686, 856
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	3 cut(s)	151, 467, 731
HpaII	CCGG	2 cut(s)	6, 876
HphI	GGTGA	1 cut(s)	859
Hpy166II	GTNNAC	3 cut(s)	127, 313, 445
Hpy188I	TCNGA	4 cut(s)	285, 472, 742, 859
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	3 cut(s)	127, 313, 445
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	5 cut(s)	217, 442, 457, 631, 709
HpyCH4IV	ACGT	3 cut(s)	131, 147, 797
HpyCH4V	TGCA	3 cut(s)	35, 552, 771
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 175, 422
HpyF3I	CTNAG	4 cut(s)	675, 871, 992, 998
HpySE526I	ACGT	3 cut(s)	131, 147, 797
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	6 cut(s)	21, 35, 49, 305, 686, 856
HspAI	GCGC	1 cut(s)	450
KroI	GCCGGC	1 cut(s)	875
KroNI	GCCGGC	1 cut(s)	877
Lsp1109I	GCAGC	3 cut(s)	47, 497, 1011
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	3 cut(s)	131, 147, 797
MaeIII	GTNAC	2 cut(s)	193, 678
MfeI	CAATTG	1 cut(s)	547
MluCI	AATT	5 cut(s)	57, 248, 348, 547, 595
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	2 cut(s)	308, 413
MroNI	GCCGGC	1 cut(s)	875
MseI	TTAA	3 cut(s)	56, 273, 501
MslI	CAYNNNNRTG	1 cut(s)	851
MspA1I	CMGCKG	1 cut(s)	964
MspI	CCGG	2 cut(s)	6, 876
MspR9I	CCNGG	3 cut(s)	569, 829, 924
MunI	CAATTG	1 cut(s)	547
Mva1269I	GAATGC	1 cut(s)	279
MvaI	CCWGG	3 cut(s)	569, 829, 924
MwoI	GCNNNNNNNGC	3 cut(s)	77, 175, 422
NaeI	GCCGGC	1 cut(s)	877
NgoMIV	GCCGGC	1 cut(s)	875
NlaIII	CATG	6 cut(s)	21, 35, 49, 305, 686, 856
NlaIV	GGNNCC	2 cut(s)	921, 1015
NmeAIII	GCCGAG	1 cut(s)	713
NspI	RCATGY	4 cut(s)	21, 305, 686, 856
PasI	CCCWGGG	1 cut(s)	828
PciI	ACATGT	2 cut(s)	301, 682
PctI	GAATGC	1 cut(s)	279
PdiI	GCCGGC	1 cut(s)	877
PfeI	GAWTC	2 cut(s)	151, 467
PfoI	TCCNGGA	1 cut(s)	567
PkrI	GCNGC	3 cut(s)	37, 487, 1026
PleI	GAGTC	1 cut(s)	725
PmaCI	CACGTG	1 cut(s)	132
PmlI	CACGTG	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	725
Ppu21I	YACGTR	2 cut(s)	132, 798
PscI	ACATGT	2 cut(s)	301, 682
PshBI	ATTAAT	1 cut(s)	56
Psp6I	CCWGG	3 cut(s)	567, 827, 922
PspCI	CACGTG	1 cut(s)	132
PspGI	CCWGG	3 cut(s)	567, 827, 922
PspN4I	GGNNCC	2 cut(s)	921, 1015
PspPI	GGNCC	2 cut(s)	819, 920
PvuII	CAGCTG	1 cut(s)	964
RsaI	GTAC	4 cut(s)	105, 158, 314, 332
RsaNI	GTAC	4 cut(s)	104, 157, 313, 331
RseI	CAYNNNNRTG	1 cut(s)	851
SaqAI	TTAA	3 cut(s)	56, 273, 501
SatI	GCNGC	3 cut(s)	36, 486, 1025
Sau96I	GGNCC	2 cut(s)	819, 920
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	3 cut(s)	569, 829, 924
SinI	GGWCC	2 cut(s)	819, 920
SmiMI	CAYNNNNRTG	1 cut(s)	851
Sse9I	AATT	5 cut(s)	57, 248, 348, 547, 595
SsiI	CCGC	2 cut(s)	69, 895
SspMI	CTAG	1 cut(s)	689
StyD4I	CCNGG	3 cut(s)	567, 827, 922
TaaI	ACNGT	5 cut(s)	217, 442, 457, 631, 709
TaiI	ACGT	3 cut(s)	134, 150, 800
TasI	AATT	5 cut(s)	57, 248, 348, 547, 595
TatI	WGTACW	2 cut(s)	312, 330
TfiI	GAWTC	2 cut(s)	151, 467
Tru1I	TTAA	3 cut(s)	56, 273, 501
Tru9I	TTAA	3 cut(s)	56, 273, 501
TscAI	CASTG	5 cut(s)	268, 462, 634, 679, 714
TseI	GCWGC	3 cut(s)	35, 485, 1024
TspDTI	ATGAA	3 cut(s)	245, 628, 714
TspGWI	ACGGA	3 cut(s)	144, 212, 370
TspRI	CASTG	5 cut(s)	268, 462, 634, 679, 714
VpaK11BI	GGWCC	2 cut(s)	819, 920
VspI	ATTAAT	1 cut(s)	56
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	4 cut(s)	21, 305, 686, 856
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 829
XspI	CTAG	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.