RLG00000026857

Pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
6548282 .. 6552156
3875 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026857

Sequence Viewer

Length: 1368 bp
ATGGCCGGAAGAAAGAAATGGATGGGCATCCATGGAGCTCTCATGATGATCACGACGATCCTCCTTGCTGCTACTGTTTCCATGGCGGATGGTGATGCAGTCGTACCAGCCGCAAAATCCGAACTGGACAAGTGGTTCAACAACAATGTGAAGCCGTTCAAAGAACAAAAGTCGCTTGACGCTGCCCTTGTCACGGCGGAGGAGGGTGCGAAAGTTGTGAAGGTCATGCAAGATGGGGGAGACTACAAGAAAATCATGGAGGCGATTGATAGCATTCCGGCCGGGAACACTAAACGTGTGATTGTATACATTGGAGGGGGTACCTACAATGAGAAAATAACAATTCCAAAAAACAAACCATTTGTCACATTAGTTGGGGATTCAAAAAACATTCCGAATTTGACATATTCCGGCGATGCCGCCAAATATGGGACGGTGAATAGTGCTACATTGGCAGTGGAATCCGACTACTTCACTGCTGCTAACTTAAATATCATAAATTCCTCACCAAAACCAGATGGAAAAAGAGAAGGGGCACAAGCAGTTGCCTTGAGGGTGTCCGGGACCAAGGCCGCATTGTACAATTGCAAAATGTATGGATTTCAGGACACCATTTGTGATGATAAAGGCTATCATTTCTTCAAGGACTGCTACGTTGAAGGAACTGTAGATTTCATCTTTGGAAGTGGAAAATCTCTCTATTTGAGCACAGATTTACATGTTTTAGGGGACACCGGAATGACGGTGATAACCGCACAGGCAAGGGACAGTAAAGAGGACACCGGATACTCATTTGTTCACTGCAATATAACCGGGACCGCCAAGGGCACATTTTTGGGCAGAGCTTGGAGGGCTAGTCCCCAGGTGGTGTATGCCTACACCGCCATGGGAGAAGTTGTCAGTCCAGAAGGATGGACCGACAATCGCCACCCCGAATACGACAACTCTGTTAATTTTGGAGAGTACAAGTGTATTGGTCCAGGTTCAAGTATGAGTAAGAGAGTGAGATTCACAAAAGAGCTGAGCGAGGCAGATGCCAAACCTTACATCAGCCTGAGCTTTATTGAGGGTTCCAAGTGGTTGCTTCCTCCTCCAAATCCGAAGATGGAACAAGAGCTCTCCTTAAAATCAGAATCAGCTCCAAATTCTGGCCAAGGTTTCGACTTCGACGCAGGACATGGCACTTTGAAGGGAGTGTTGAGCCACATGTCGACGATCTCGATGGCGGCTTCCGGTGCTGTGGACATGCTGGAGATAGGAGGACTTTGGAGCTGGGCGTTGAGGGCGTCGAACGGGGAGAGACACATGGCCGCGAAGACTTCGGGGAACTTGTTGTCTAAGGTCGCGACGCCGACGCCGGTGCTGTAG

Protein Analysis

456

Amino Acids

49.0

Weight (kDa)

7.08

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 75 - 357 6.4e-59 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 320
AccB7I CCANNNNNTGG 1 cut(s) 1148
AccI GTMKAC 2 cut(s) 306, 1211
AccII CGCG 2 cut(s) 1313, 1346
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 4 cut(s) 3, 279, 1150, 1308
AcsI RAATTY 3 cut(s) 397, 499, 1144
AcyI GRCGYC 3 cut(s) 1286, 1349, 1355
AfaI GTAC 4 cut(s) 105, 322, 581, 965
AfiI CCNNNNNNNGG 3 cut(s) 193, 429, 1148
AflIII ACRYGT 3 cut(s) 295, 718, 1206
AgsI TTSAA 7 cut(s) 139, 160, 384, 643, 659, 987, 1189
AjnI CCWGG 2 cut(s) 861, 979
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 7 cut(s) 38, 845, 1021, 1059, 1117, 1139, 1272
AluI AGCT 7 cut(s) 38, 845, 1021, 1059, 1117, 1139, 1272
Alw21I GWGCWC 3 cut(s) 40, 710, 1119
Alw26I GTCTC 2 cut(s) 234, 1294
AlwI GGATC 1 cut(s) 52
AoxI GGCC 5 cut(s) 3, 279, 570, 1150, 1308
ApeKI GCWGC 3 cut(s) 68, 182, 479
ApoI RAATTY 3 cut(s) 397, 499, 1144
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
Asp700I GAANNNNTTC 1 cut(s) 155
Asp718I GGTACC 1 cut(s) 320
AspS9I GGNCC 4 cut(s) 564, 816, 915, 977
AsuC2I CCSGG 3 cut(s) 283, 562, 814
AsuHPI GGTGA 4 cut(s) 104, 448, 498, 757
AvaII GGWCC 4 cut(s) 564, 816, 915, 977
BaeGI GKGCMC 2 cut(s) 538, 830
BalI TGGCCA 1 cut(s) 1152
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 2 cut(s) 40, 1119
BbsI GAAGAC 1 cut(s) 1322
Bbv12I GWGCWC 3 cut(s) 40, 710, 1119
BbvI GCAGC 3 cut(s) 55, 169, 466
BccI CCATC 7 cut(s) 16, 83, 227, 512, 906, 1099, 1216
BceAI ACGGC 2 cut(s) 139, 210
BcgI CGANNNNNNTGC 3 cut(s) 1016, 1050, 1342
BciT130I CCWGG 2 cut(s) 863, 981
BciVI GTATCC 1 cut(s) 779
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 3 cut(s) 283, 562, 814
BcoDI GTCTC 2 cut(s) 234, 1294
BfaI CTAG 1 cut(s) 855
BfmI CTRYAG 2 cut(s) 666, 1364
BfuI GTATCC 1 cut(s) 779
BisI GCNGC 8 cut(s) 69, 111, 183, 420, 480, 573, 1227, 1311
BlpI GCTNAGC 1 cut(s) 1022
BlsI GCNGC 8 cut(s) 70, 112, 184, 421, 481, 574, 1228, 1312
Bme1390I CCNGG 5 cut(s) 283, 562, 814, 863, 981
Bme18I GGWCC 4 cut(s) 564, 816, 915, 977
BmgT120I GGNCC 4 cut(s) 564, 816, 915, 977
BmiI GGNNCC 4 cut(s) 322, 565, 817, 1072
BmrFI CCNGG 5 cut(s) 283, 562, 814, 863, 981
BmsI GCATC 4 cut(s) 36, 85, 406, 1024
BpiI GAAGAC 1 cut(s) 1322
BpmI CTGGAG 1 cut(s) 1271
Bpu10I CCTNAGC 1 cut(s) 1055
Bpu1102I GCTNAGC 1 cut(s) 1022
BpuEI CTTGAG 1 cut(s) 571
BpuMI CCSGG 3 cut(s) 283, 562, 814
BsaBI GATNNNNATC 1 cut(s) 26
BsaHI GRCGYC 3 cut(s) 1286, 1349, 1355
BsaJI CCNNGG 7 cut(s) 31, 81, 567, 822, 861, 885, 1153
BsaWI WCCGGW 3 cut(s) 734, 782, 1232
BsaXI ACNNNNNCTCC 4 cut(s) 841, 871, 882, 912
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 429, 1148
Bse118I RCCGGY 1 cut(s) 1357
Bse1I ACTGG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 26
BseBI CCWGG 2 cut(s) 863, 981
BseDI CCNNGG 7 cut(s) 31, 81, 567, 822, 861, 885, 1153
BseGI GGATG 4 cut(s) 27, 27, 94, 917
BseJI GATNNNNATC 1 cut(s) 26
BseLI CCNNNNNNNGG 3 cut(s) 193, 429, 1148
BseMII CTCAG 2 cut(s) 1013, 1046
BseNI ACTGG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 215, 1080
BseSI GKGCMC 2 cut(s) 538, 830
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 55, 169, 466
BseYI CCCAGC 1 cut(s) 1272
Bsh1236I CGCG 2 cut(s) 1313, 1346
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 5 cut(s) 5, 281, 572, 1152, 1310
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 3 cut(s) 40, 710, 1119
BslFI GGGAC 6 cut(s) 445, 577, 743, 779, 829, 843
BslI CCNNNNNNNGG 3 cut(s) 193, 429, 1148
BsmAI GTCTC 2 cut(s) 234, 1294
BsmFI GGGAC 6 cut(s) 445, 577, 743, 779, 829, 843
BsmI GAATGC 1 cut(s) 273
BsnI GGCC 5 cut(s) 5, 281, 572, 1152, 1310
Bsp1286I GDGCHC 5 cut(s) 40, 538, 710, 830, 1119
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 3 cut(s) 48, 57, 1215
Bsp1720I GCTNAGC 1 cut(s) 1022
Bsp19I CCATGG 3 cut(s) 31, 81, 885
Bsp68I TCGCGA 1 cut(s) 1346
BspANI GGCC 5 cut(s) 5, 281, 572, 1152, 1310
BspCNI CTCAG 2 cut(s) 1014, 1047
BspFNI CGCG 2 cut(s) 1313, 1346
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 4 cut(s) 322, 565, 817, 1072
BspPI GGATC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 1357
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 1357
BssECI CCNNGG 7 cut(s) 31, 81, 567, 822, 861, 885, 1153
BssMI GATC 3 cut(s) 48, 57, 1215
BssNAI GTATAC 1 cut(s) 307
BssNI GRCGYC 3 cut(s) 1286, 1349, 1355
BssT1I CCWWGG 6 cut(s) 31, 81, 567, 822, 885, 1153
Bst1107I GTATAC 1 cut(s) 307
Bst2UI CCWGG 2 cut(s) 863, 981
Bst4CI ACNGT 5 cut(s) 76, 436, 667, 745, 770
BstACI GRCGYC 3 cut(s) 1286, 1349, 1355
BstAUI TGTACA 1 cut(s) 579
BstDEI CTNAG 3 cut(s) 1022, 1055, 1338
BstDSI CCRYGG 3 cut(s) 31, 81, 885
BstF5I GGATG 4 cut(s) 27, 27, 94, 917
BstFNI CGCG 2 cut(s) 1313, 1346
BstKTI GATC 3 cut(s) 51, 60, 1218
BstMAI GTCTC 2 cut(s) 234, 1294
BstMBI GATC 3 cut(s) 48, 57, 1215
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 5 cut(s) 452, 851, 881, 1235, 1283
BstNI CCWGG 2 cut(s) 863, 981
BstNSI RCATGY 3 cut(s) 722, 1210, 1249
BstSCI CCNGG 5 cut(s) 281, 560, 812, 861, 979
BstSFI CTRYAG 2 cut(s) 666, 1364
BstSLI GKGCMC 2 cut(s) 538, 830
BstUI CGCG 2 cut(s) 1313, 1346
BstV1I GCAGC 3 cut(s) 55, 169, 466
BstV2I GAAGAC 1 cut(s) 1322
BstXI CCANNNNNNTGG 1 cut(s) 912
BstZ17I GTATAC 1 cut(s) 307
BstZI CGGCCG 1 cut(s) 279
BsuI GTATCC 1 cut(s) 779
BsuRI GGCC 5 cut(s) 5, 281, 572, 1152, 1310
BtgI CCRYGG 3 cut(s) 31, 81, 885
BtgZI GCGATG 1 cut(s) 429
BtsCI GGATG 4 cut(s) 27, 27, 94, 917
BtsI GCAGTG 3 cut(s) 462, 474, 799
BtsIMutI CAGTG 3 cut(s) 462, 474, 799
BtuMI TCGCGA 1 cut(s) 1346
CciI TCATGA 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 1357
Cfr13I GGNCC 4 cut(s) 564, 816, 915, 977
CseI GACGC 5 cut(s) 188, 1178, 1275, 1357, 1363
Csp6I GTAC 4 cut(s) 104, 321, 580, 964
CviQI GTAC 4 cut(s) 104, 321, 580, 964
DdeI CTNAG 3 cut(s) 1022, 1055, 1338
DpnI GATC 3 cut(s) 50, 59, 1217
DpnII GATC 3 cut(s) 48, 57, 1215
EaeI YGGCCR 4 cut(s) 3, 279, 1150, 1308
EagI CGGCCG 1 cut(s) 279
EciI GGCGGA 2 cut(s) 101, 212
Ecl136II GAGCTC 2 cut(s) 38, 1117
EclXI CGGCCG 1 cut(s) 279
Eco130I CCWWGG 6 cut(s) 31, 81, 567, 822, 885, 1153
Eco24I GRGCYC 2 cut(s) 40, 1119
Eco47I GGWCC 4 cut(s) 564, 816, 915, 977
Eco52I CGGCCG 1 cut(s) 279
Eco53kI GAGCTC 2 cut(s) 38, 1117
EcoICRI GAGCTC 2 cut(s) 38, 1117
EcoRII CCWGG 2 cut(s) 861, 979
EcoT14I CCWWGG 6 cut(s) 31, 81, 567, 822, 885, 1153
EcoT38I GRGCYC 2 cut(s) 40, 1119
ErhI CCWWGG 6 cut(s) 31, 81, 567, 822, 885, 1153
FaqI GGGAC 6 cut(s) 445, 577, 743, 779, 829, 843
FbaI TGATCA 1 cut(s) 48
FblI GTMKAC 2 cut(s) 306, 1211
Fnu4HI GCNGC 8 cut(s) 69, 111, 183, 420, 480, 573, 1227, 1311
FokI GGATG 4 cut(s) 14, 34, 101, 924
FriOI GRGCYC 2 cut(s) 40, 1119
Fsp4HI GCNGC 8 cut(s) 69, 111, 183, 420, 480, 573, 1227, 1311
FspBI CTAG 1 cut(s) 855
GluI GCNGC 8 cut(s) 69, 111, 183, 420, 480, 573, 1227, 1311
GsaI CCCAGC 1 cut(s) 1276
GsuI CTGGAG 1 cut(s) 1271
HaeIII GGCC 5 cut(s) 5, 281, 572, 1152, 1310
HgaI GACGC 5 cut(s) 188, 1178, 1275, 1357, 1363
Hin1I GRCGYC 3 cut(s) 1286, 1349, 1355
HincII GTYRAC 1 cut(s) 1212
HindII GTYRAC 1 cut(s) 1212
HinfI GANTC 4 cut(s) 380, 461, 1008, 1133
HphI GGTGA 4 cut(s) 104, 448, 498, 757
Hpy166II GTNNAC 4 cut(s) 307, 799, 1212, 1243
Hpy188I TCNGA 5 cut(s) 121, 396, 466, 1101, 1132
Hpy188III TCNNGA 6 cut(s) 43, 52, 605, 905, 1219, 1345
Hpy8I GTNNAC 4 cut(s) 307, 799, 1212, 1243
Hpy99I CGWCG 6 cut(s) 58, 1172, 1216, 1291, 1351, 1357
HpyAV CCTTC 5 cut(s) 214, 524, 653, 902, 1183
HpyCH4III ACNGT 5 cut(s) 76, 436, 667, 745, 770
HpyCH4IV ACGT 2 cut(s) 295, 654
HpyCH4V TGCA 4 cut(s) 98, 229, 588, 804
HpyF10VI GCNNNNNNNGC 5 cut(s) 452, 851, 881, 1235, 1283
HpyF3I CTNAG 3 cut(s) 1022, 1055, 1338
HpySE526I ACGT 2 cut(s) 295, 654
Hsp92I GRCGYC 3 cut(s) 1286, 1349, 1355
KpnI GGTACC 1 cut(s) 324
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 3 cut(s) 48, 57, 1215
LmnI GCTCC 3 cut(s) 35, 1144, 1269
Lsp1109I GCAGC 3 cut(s) 55, 169, 466
LweI GCATC 4 cut(s) 36, 85, 406, 1024
MaeI CTAG 1 cut(s) 855
MaeII ACGT 2 cut(s) 295, 654
MaeIII GTNAC 2 cut(s) 190, 364
MalI GATC 3 cut(s) 50, 59, 1217
MboI GATC 3 cut(s) 48, 57, 1215
MboII GAAGA 4 cut(s) 21, 631, 1114, 1327
MfeI CAATTG 1 cut(s) 583
MhlI GDGCHC 5 cut(s) 40, 538, 710, 830, 1119
MlsI TGGCCA 1 cut(s) 1152
MluCI AATT 6 cut(s) 342, 397, 499, 583, 952, 1144
MluNI TGGCCA 1 cut(s) 1152
MmeI TCCRAC 1 cut(s) 489
Mox20I TGGCCA 1 cut(s) 1152
MroXI GAANNNNTTC 1 cut(s) 155
MscI TGGCCA 1 cut(s) 1152
MseI TTAA 3 cut(s) 488, 951, 1124
MslI CAYNNNNRTG 2 cut(s) 737, 884
Msp20I TGGCCA 1 cut(s) 1152
MspR9I CCNGG 5 cut(s) 283, 562, 814, 863, 981
MunI CAATTG 1 cut(s) 583
Mva1269I GAATGC 1 cut(s) 273
MvaI CCWGG 2 cut(s) 863, 981
MvnI CGCG 2 cut(s) 1313, 1346
MwoI GCNNNNNNNGC 5 cut(s) 452, 851, 881, 1235, 1283
NciI CCSGG 3 cut(s) 283, 562, 814
NcoI CCATGG 3 cut(s) 31, 81, 885
NdeII GATC 3 cut(s) 48, 57, 1215
NlaIV GGNNCC 4 cut(s) 322, 565, 817, 1072
NmuCI GTSAC 2 cut(s) 190, 364
NruI TCGCGA 1 cut(s) 1346
NspI RCATGY 3 cut(s) 722, 1210, 1249
PagI TCATGA 1 cut(s) 42
PciI ACATGT 2 cut(s) 718, 1206
PcsI WCGNNNNNNNCGW 1 cut(s) 1217
PctI GAATGC 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 4 cut(s) 380, 461, 1008, 1133
PflMI CCANNNNNTGG 1 cut(s) 1148
PfoI TCCNGGA 1 cut(s) 560
PkrI GCNGC 8 cut(s) 70, 112, 184, 421, 481, 574, 1228, 1312
PscI ACATGT 2 cut(s) 718, 1206
Psp124BI GAGCTC 2 cut(s) 40, 1119
Psp6I CCWGG 2 cut(s) 861, 979
PspFI CCCAGC 1 cut(s) 1272
PspGI CCWGG 2 cut(s) 861, 979
PspN4I GGNNCC 4 cut(s) 322, 565, 817, 1072
PspPI GGNCC 4 cut(s) 564, 816, 915, 977
RruI TCGCGA 1 cut(s) 1346
RsaI GTAC 4 cut(s) 105, 322, 581, 965
RsaNI GTAC 4 cut(s) 104, 321, 580, 964
RseI CAYNNNNRTG 2 cut(s) 737, 884
SacI GAGCTC 2 cut(s) 40, 1119
SalI GTCGAC 1 cut(s) 1210
SaqAI TTAA 3 cut(s) 488, 951, 1124
SatI GCNGC 8 cut(s) 69, 111, 183, 420, 480, 573, 1227, 1311
Sau3AI GATC 3 cut(s) 48, 57, 1215
Sau96I GGNCC 4 cut(s) 564, 816, 915, 977
ScrFI CCNGG 5 cut(s) 283, 562, 814, 863, 981
SduI GDGCHC 5 cut(s) 40, 538, 710, 830, 1119
SfaNI GCATC 4 cut(s) 36, 85, 406, 1024
SfcI CTRYAG 2 cut(s) 666, 1364
SgrAI CRCCGGYG 1 cut(s) 1357
SinI GGWCC 4 cut(s) 564, 816, 915, 977
SmiMI CAYNNNNRTG 2 cut(s) 737, 884
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
Sse9I AATT 6 cut(s) 342, 397, 499, 583, 952, 1144
SspMI CTAG 1 cut(s) 855
SstI GAGCTC 2 cut(s) 40, 1119
StyD4I CCNGG 5 cut(s) 281, 560, 812, 861, 979
StyI CCWWGG 6 cut(s) 31, 81, 567, 822, 885, 1153
TaaI ACNGT 5 cut(s) 76, 436, 667, 745, 770
TaiI ACGT 2 cut(s) 298, 657
TaqI TCGA 5 cut(s) 1161, 1167, 1211, 1220, 1289
TaqII GACCGA 1 cut(s) 932
TasI AATT 6 cut(s) 342, 397, 499, 583, 952, 1144
TatI WGTACW 2 cut(s) 579, 963
TauI GCSGC 5 cut(s) 113, 422, 575, 1229, 1313
TfiI GAWTC 4 cut(s) 380, 461, 1008, 1133
Tru1I TTAA 3 cut(s) 488, 951, 1124
Tru9I TTAA 3 cut(s) 488, 951, 1124
TscAI CASTG 3 cut(s) 462, 481, 806
TseFI GTSAC 2 cut(s) 190, 364
TseI GCWGC 3 cut(s) 68, 182, 479
Tsp45I GTSAC 2 cut(s) 190, 364
TspDTI ATGAA 1 cut(s) 664
TspRI CASTG 3 cut(s) 462, 481, 806
Van91I CCANNNNNTGG 1 cut(s) 1148
VpaK11BI GGWCC 4 cut(s) 564, 816, 915, 977
XapI RAATTY 3 cut(s) 397, 499, 1144
XceI RCATGY 3 cut(s) 722, 1210, 1249
XmiI GTMKAC 2 cut(s) 306, 1211
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.