RLG00000026858

Pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
6554736 .. 6556154
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026858

Sequence Viewer

Length: 1116 bp
ATGGCCGTAAGAGAGAAATGGTTGGGCATCCATGCAGCTCTGATGATGATCACGACGATTCTCCTTGCTGCTACCGTTTCCATGGCAGATGATGCAGTCATGCCAGCCGAAAAATCCGGACTGGACAAATGGTTCAAAGACAATGTGAAGCCGTTGGCAGAACAGAAGTCCTCGCTTGACCCTGCCCTTGTCAAGGCGGAGGAGGGTGATCCCAAAGTTGTGAAGGTCATGCAAAATGGGGGAGACTACAAGAAAATCTCGGAGGCCATTGATGGCATTCCGGCCGGGAACACTAAACGTATGATTATATACATTGGAGGAGGTACATACAATGAGAAAATAACAATTCCAAAAAATAAATCATTTGTCACATTTTTGGGGGATTCACAAAACATGCCGAATTTGACATATGATGGTGATGCCGCCAAGCATAATGGGACACTTTATAGTGCTACATTGACGGTGGAATCCGACTACTTCATTGGGGTTAACTTAAACATCATAAATTCCTCGCCTAGGCCAGATGGTAAAAAAGAGGGCGCTCAAGCAGTTGCCTTGAGGGTATTCGGGACCAAGGCCGCATTGTACAATTGCAAAATGTTTGGATTTCAGGACACCCTTTGTGATGATCAAGGCTATCATTTCTTCAAGGATTGCTACGTTGAAGGAACTGTAGATTTCATCTTCGGAAGAGGAAAATCTCTCTATTTGAACACACATTTACATGTGTTAGGGGACAACGGAATGACGGTGATAACGGCACAGGCAAGGGAAGGTGATGAAGACAACGGATACTCATTTGTTCACTGCAACATAACCGGTACCGGCAATGGCACATATTTGGGCAGGGCTTGGAGAGCTGCTCCCAAGGTGTTGTTTGCCTACACCAACATGGGAGAAGTTGTCAAGCCAGAAGGATGGACCGACAATTTCCACCCCGAATACGACAACACAGTTCAATTTGGAGAGTACAAGAATACTGGTCCAGGTTCAAGCATGAGTAAGAGAGTGAAATTCACACAAGAGCTGAGCGATGAAGATGCCAAACCTTTCATCAGCCTAGGCTTTATTGAGGGATCCAAATGGTTGCTTCCTCCTCCTAATCCAAAGGTCTAA

Protein Analysis

372

Amino Acids

40.74

Weight (kDa)

5.86

Isoelectric Point (pI)

25.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 77 - 359 1.1e-60 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 821
AccB1I GGYRCC 1 cut(s) 821
AccIII TCCGGA 1 cut(s) 116
AciI CCGC 3 cut(s) 197, 423, 579
AclWI GGATC 3 cut(s) 203, 1071, 1084
AcoI YGGCCR 2 cut(s) 3, 282
AcsI RAATTY 3 cut(s) 400, 505, 1013
AfaI GTAC 4 cut(s) 325, 587, 823, 971
AfiI CCNNNNNNNGG 2 cut(s) 193, 516
AflIII ACRYGT 1 cut(s) 724
AgeI ACCGGT 1 cut(s) 818
AgsI TTSAA 6 cut(s) 136, 649, 665, 712, 959, 993
AjnI CCWGG 1 cut(s) 985
AloI GAACNNNNNNTCC 2 cut(s) 116, 148
AluBI AGCT 3 cut(s) 38, 860, 1027
AluI AGCT 3 cut(s) 38, 860, 1027
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 3 cut(s) 203, 1071, 1084
Aor13HI TCCGGA 1 cut(s) 116
AoxI GGCC 5 cut(s) 3, 264, 282, 518, 576
ApeKI GCWGC 3 cut(s) 35, 68, 860
ApoI RAATTY 3 cut(s) 400, 505, 1013
AsiGI ACCGGT 1 cut(s) 818
Asp718I GGTACC 1 cut(s) 821
AspA2I CCTAGG 2 cut(s) 515, 1060
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 3 cut(s) 570, 921, 983
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 4 cut(s) 218, 428, 763, 788
AvaII GGWCC 3 cut(s) 570, 921, 983
AvrII CCTAGG 2 cut(s) 515, 1060
BamHI GGATCC 1 cut(s) 1076
BanI GGYRCC 1 cut(s) 821
BbsI GAAGAC 1 cut(s) 789
BbvI GCAGC 3 cut(s) 47, 55, 847
BccI CCATC 4 cut(s) 266, 407, 518, 912
BceAI ACGGC 2 cut(s) 136, 774
BcgI CGANNNNNNTGC 2 cut(s) 1022, 1056
BciT130I CCWGG 1 cut(s) 987
BciVI GTATCC 1 cut(s) 785
BclI TGATCA 2 cut(s) 48, 628
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 2 cut(s) 516, 1061
BfmI CTRYAG 1 cut(s) 672
BfoI RGCGCY 1 cut(s) 543
BfuI GTATCC 1 cut(s) 785
BisI GCNGC 5 cut(s) 36, 69, 423, 579, 861
BlnI CCTAGG 2 cut(s) 515, 1060
BlpI GCTNAGC 1 cut(s) 1028
BlsI GCNGC 5 cut(s) 37, 70, 424, 580, 862
Bme1390I CCNGG 2 cut(s) 286, 987
Bme18I GGWCC 3 cut(s) 570, 921, 983
BmgT120I GGNCC 3 cut(s) 570, 921, 983
BmiI GGNNCC 3 cut(s) 571, 823, 1078
BmrFI CCNGG 2 cut(s) 286, 987
BmsI GCATC 4 cut(s) 36, 82, 409, 1030
BpiI GAAGAC 1 cut(s) 789
BplI GAGNNNNNCTC 2 cut(s) 847, 879
Bpu1102I GCTNAGC 1 cut(s) 1028
BpuEI CTTGAG 2 cut(s) 528, 577
BpuMI CCSGG 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 47
BsaJI CCNNGG 5 cut(s) 81, 515, 573, 867, 1060
BsaWI WCCGGW 2 cut(s) 116, 818
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 516
Bse118I RCCGGY 2 cut(s) 818, 824
Bse1I ACTGG 2 cut(s) 126, 985
Bse3DI GCAATG 1 cut(s) 835
Bse8I GATNNNNATC 1 cut(s) 47
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 1 cut(s) 987
BseDI CCNNGG 5 cut(s) 81, 515, 573, 867, 1060
BseGI GGATG 2 cut(s) 27, 923
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 193, 516
BseMI GCAATG 1 cut(s) 835
BseMII CTCAG 1 cut(s) 1019
BseNI ACTGG 2 cut(s) 126, 985
BseRI GAGGAG 3 cut(s) 215, 333, 1086
BseX3I CGGCCG 1 cut(s) 282
BseXI GCAGC 3 cut(s) 47, 55, 847
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 5 cut(s) 5, 266, 284, 520, 578
BshNI GGYRCC 1 cut(s) 821
BshTI ACCGGT 1 cut(s) 818
BsiEI CGRYCG 1 cut(s) 285
BsiSI CCGG 5 cut(s) 117, 281, 285, 819, 825
BslFI GGGAC 3 cut(s) 451, 583, 749
BslI CCNNNNNNNGG 2 cut(s) 193, 516
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 3 cut(s) 451, 583, 749
BsmI GAATGC 1 cut(s) 276
BsnI GGCC 5 cut(s) 5, 266, 284, 520, 578
Bsp13I TCCGGA 1 cut(s) 116
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 4 cut(s) 48, 208, 628, 1076
Bsp1720I GCTNAGC 1 cut(s) 1028
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 3 cut(s) 197, 423, 579
BspANI GGCC 5 cut(s) 5, 266, 284, 520, 578
BspCNI CTCAG 1 cut(s) 1020
BspEI TCCGGA 1 cut(s) 116
BspLI GGNNCC 3 cut(s) 571, 823, 1078
BspPI GGATC 3 cut(s) 203, 1071, 1084
BspT107I GGYRCC 1 cut(s) 821
BsrDI GCAATG 1 cut(s) 835
BsrFI RCCGGY 2 cut(s) 818, 824
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 2 cut(s) 126, 985
BssAI RCCGGY 2 cut(s) 818, 824
BssECI CCNNGG 5 cut(s) 81, 515, 573, 867, 1060
BssMI GATC 4 cut(s) 48, 208, 628, 1076
BssT1I CCWWGG 5 cut(s) 81, 515, 573, 867, 1060
Bst2UI CCWGG 1 cut(s) 987
Bst4CI ACNGT 5 cut(s) 76, 463, 673, 751, 955
Bst6I CTCTTC 1 cut(s) 685
BstAPI GCANNNNNTGC 1 cut(s) 92
BstAUI TGTACA 1 cut(s) 585
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 1028
BstDSI CCRYGG 1 cut(s) 81
BstENI CCTNNNNNAGG 2 cut(s) 191, 514
BstF5I GGATG 2 cut(s) 27, 923
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 4 cut(s) 51, 211, 631, 1079
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 4 cut(s) 48, 208, 628, 1076
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 2 cut(s) 92, 857
BstNI CCWGG 1 cut(s) 987
BstNSI RCATGY 2 cut(s) 397, 728
BstSCI CCNGG 2 cut(s) 284, 985
BstSFI CTRYAG 1 cut(s) 672
BstV1I GCAGC 3 cut(s) 47, 55, 847
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 1 cut(s) 1076
BstXI CCANNNNNNTGG 1 cut(s) 918
BstYI RGATCY 1 cut(s) 1076
BstZI CGGCCG 1 cut(s) 282
BsuI GTATCC 1 cut(s) 785
BsuRI GGCC 5 cut(s) 5, 266, 284, 520, 578
BtgI CCRYGG 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 1047
BtsCI GGATG 2 cut(s) 27, 923
BtsI GCAGTG 1 cut(s) 805
BtsIMutI CAGTG 1 cut(s) 805
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 542
Cfr10I RCCGGY 2 cut(s) 818, 824
Cfr13I GGNCC 3 cut(s) 570, 921, 983
Csp6I GTAC 4 cut(s) 324, 586, 822, 970
CspAI ACCGGT 1 cut(s) 818
CviAII CATG 8 cut(s) 32, 82, 100, 229, 394, 725, 892, 997
CviQI GTAC 4 cut(s) 324, 586, 822, 970
DdeI CTNAG 1 cut(s) 1028
DpnI GATC 4 cut(s) 50, 210, 630, 1078
DpnII GATC 4 cut(s) 48, 208, 628, 1076
EaeI YGGCCR 2 cut(s) 3, 282
EagI CGGCCG 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 685
EarI CTCTTC 1 cut(s) 685
EciI GGCGGA 1 cut(s) 212
EclXI CGGCCG 1 cut(s) 282
Eco130I CCWWGG 5 cut(s) 81, 515, 573, 867, 1060
Eco47I GGWCC 3 cut(s) 570, 921, 983
Eco52I CGGCCG 1 cut(s) 282
EcoNI CCTNNNNNAGG 2 cut(s) 191, 514
EcoRII CCWGG 1 cut(s) 985
EcoT14I CCWWGG 5 cut(s) 81, 515, 573, 867, 1060
ErhI CCWWGG 5 cut(s) 81, 515, 573, 867, 1060
FaeI CATG 8 cut(s) 35, 85, 103, 232, 397, 728, 895, 1000
FaqI GGGAC 3 cut(s) 451, 583, 749
FatI CATG 8 cut(s) 31, 81, 99, 228, 393, 724, 891, 996
FauNDI CATATG 1 cut(s) 409
FbaI TGATCA 2 cut(s) 48, 628
Fnu4HI GCNGC 5 cut(s) 36, 69, 423, 579, 861
FokI GGATG 2 cut(s) 14, 930
Fsp4HI GCNGC 5 cut(s) 36, 69, 423, 579, 861
FspBI CTAG 2 cut(s) 516, 1061
GlaI GCGC 1 cut(s) 541
GluI GCNGC 5 cut(s) 36, 69, 423, 579, 861
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 5 cut(s) 5, 266, 284, 520, 578
HapII CCGG 5 cut(s) 117, 281, 285, 819, 825
HhaI GCGC 1 cut(s) 542
Hin1II CATG 8 cut(s) 35, 85, 103, 232, 397, 728, 895, 1000
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 3 cut(s) 58, 383, 467
HpaI GTTAAC 1 cut(s) 490
HpaII CCGG 5 cut(s) 117, 281, 285, 819, 825
HphI GGTGA 4 cut(s) 218, 428, 763, 788
Hpy166II GTNNAC 2 cut(s) 490, 805
Hpy188I TCNGA 4 cut(s) 42, 262, 472, 689
Hpy188III TCNNGA 4 cut(s) 52, 117, 568, 611
Hpy8I GTNNAC 2 cut(s) 490, 805
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 4 cut(s) 217, 659, 767, 908
HpyCH4III ACNGT 5 cut(s) 76, 463, 673, 751, 955
HpyCH4IV ACGT 2 cut(s) 298, 660
HpyCH4V TGCA 5 cut(s) 35, 95, 232, 594, 810
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 857
HpyF3I CTNAG 1 cut(s) 1028
HpySE526I ACGT 2 cut(s) 298, 660
Hsp92II CATG 8 cut(s) 35, 85, 103, 232, 397, 728, 895, 1000
HspAI GCGC 1 cut(s) 540
Kpn2I TCCGGA 1 cut(s) 116
KpnI GGTACC 1 cut(s) 825
Ksp22I TGATCA 2 cut(s) 48, 628
KspAI GTTAAC 1 cut(s) 490
Kzo9I GATC 4 cut(s) 48, 208, 628, 1076
LmnI GCTCC 1 cut(s) 868
Lsp1109I GCAGC 3 cut(s) 47, 55, 847
LweI GCATC 4 cut(s) 36, 82, 409, 1030
MaeI CTAG 2 cut(s) 516, 1061
MaeII ACGT 2 cut(s) 298, 660
MaeIII GTNAC 1 cut(s) 367
MalI GATC 4 cut(s) 50, 210, 630, 1078
MboI GATC 4 cut(s) 48, 208, 628, 1076
MboII GAAGA 5 cut(s) 637, 676, 702, 794, 1049
MfeI CAATTG 1 cut(s) 589
MflI RGATCY 1 cut(s) 1076
MluCI AATT 7 cut(s) 345, 400, 505, 589, 928, 959, 1013
MmeI TCCRAC 1 cut(s) 495
MroI TCCGGA 1 cut(s) 116
MseI TTAA 2 cut(s) 489, 494
MslI CAYNNNNRTG 2 cut(s) 723, 890
MspI CCGG 5 cut(s) 117, 281, 285, 819, 825
MspR9I CCNGG 2 cut(s) 286, 987
MunI CAATTG 1 cut(s) 589
Mva1269I GAATGC 1 cut(s) 276
MvaI CCWGG 1 cut(s) 987
MwoI GCNNNNNNNGC 2 cut(s) 92, 857
NciI CCSGG 1 cut(s) 286
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 409
NdeII GATC 4 cut(s) 48, 208, 628, 1076
NlaIII CATG 8 cut(s) 35, 85, 103, 232, 397, 728, 895, 1000
NlaIV GGNNCC 3 cut(s) 571, 823, 1078
NmuCI GTSAC 1 cut(s) 367
NspI RCATGY 2 cut(s) 397, 728
PciI ACATGT 1 cut(s) 724
PctI GAATGC 1 cut(s) 276
PfeI GAWTC 3 cut(s) 58, 383, 467
PinAI ACCGGT 1 cut(s) 818
PkrI GCNGC 5 cut(s) 37, 70, 424, 580, 862
PscI ACATGT 1 cut(s) 724
Psp6I CCWGG 1 cut(s) 985
PspGI CCWGG 1 cut(s) 985
PspN4I GGNNCC 3 cut(s) 571, 823, 1078
PspPI GGNCC 3 cut(s) 570, 921, 983
PsuI RGATCY 1 cut(s) 1076
RsaI GTAC 4 cut(s) 325, 587, 823, 971
RsaNI GTAC 4 cut(s) 324, 586, 822, 970
RseI CAYNNNNRTG 2 cut(s) 723, 890
SaqAI TTAA 2 cut(s) 489, 494
SatI GCNGC 5 cut(s) 36, 69, 423, 579, 861
Sau3AI GATC 4 cut(s) 48, 208, 628, 1076
Sau96I GGNCC 3 cut(s) 570, 921, 983
ScrFI CCNGG 2 cut(s) 286, 987
SfaNI GCATC 4 cut(s) 36, 82, 409, 1030
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 3 cut(s) 570, 921, 983
SmiMI CAYNNNNRTG 2 cut(s) 723, 890
SmlI CTYRAG 2 cut(s) 543, 556
SmoI CTYRAG 2 cut(s) 543, 556
Sse9I AATT 7 cut(s) 345, 400, 505, 589, 928, 959, 1013
SsiI CCGC 3 cut(s) 197, 423, 579
SspMI CTAG 2 cut(s) 516, 1061
StyD4I CCNGG 2 cut(s) 284, 985
StyI CCWWGG 5 cut(s) 81, 515, 573, 867, 1060
TaaI ACNGT 5 cut(s) 76, 463, 673, 751, 955
TaiI ACGT 2 cut(s) 301, 663
TaqII GACCGA 1 cut(s) 938
TasI AATT 7 cut(s) 345, 400, 505, 589, 928, 959, 1013
TatI WGTACW 2 cut(s) 585, 969
TauI GCSGC 2 cut(s) 425, 581
TfiI GAWTC 3 cut(s) 58, 383, 467
Tru1I TTAA 2 cut(s) 489, 494
Tru9I TTAA 2 cut(s) 489, 494
TscAI CASTG 1 cut(s) 812
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 3 cut(s) 35, 68, 860
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 5 cut(s) 469, 670, 795, 1042, 1050
TspGWI ACGGA 2 cut(s) 756, 804
TspRI CASTG 1 cut(s) 812
VpaK11BI GGWCC 3 cut(s) 570, 921, 983
XagI CCTNNNNNAGG 2 cut(s) 191, 514
XapI RAATTY 3 cut(s) 400, 505, 1013
XceI RCATGY 2 cut(s) 397, 728
XmaJI CCTAGG 2 cut(s) 515, 1060
XspI CTAG 2 cut(s) 516, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.