Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

27379146 .. 27380922

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G268500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGCGTCAATGCAGCTTTAACCATGACATTAATTCTCTTCACTGCCACCATAGCCATGGCGGATGATCATACCCCAGTACCAGCCGACCAATCCCAAGTCAACACATGGTTCAATAACAACGTGAAGCCGTACACAGCACGGCGGGGCACACTTGACCCTACCCTTGCAAAGGCTGAGGCTAGTCAAAAGGTCATCAAGGTCATGAAAAACGGAAGTGGACAATTCAAGACCATCACTGACGCTGTTAATAGCATTCCTGCCGGCAACACCAAACGTGTCATTGTGTACATTGGAGGGGGAGAGTACAATGAGAAAATCACCATTCCGCGGAATAAACCATTTGTTACATTTTATGGCTCTCCAACAAATATGCCGACTTTGACCTTTGCTGGCACATCCCAAAAATATGGAACAGTGAACAGTGCCACAGTAATTGCTGAATCTGACTACTTTGTGGCAGCTAATGTTATTATTAAGAACTCTTCGCCAAGGCCAGATGGGAAAAGAGTGGGAGCGCAAGCAGTGGCATTGAGGGTGTCGGGGAACAAGTCAGCCTTGTACAATTGCAAGCTTATTGGTTTCCAGGACACCCTTTGTGATGATAGGGGCAATCATTTGTTCAAGGACTGCTTCATTGAAGGCACTGTGGATTTCATATGGGGAAGTGGAAAGTCTCTCTATTTGAACACTGAGTTACATGTGTTGGGGGATAATGGATTAACAGTGATAACAGCACAAGCAAGGGACTCAGCTTCAGAGGATACTGGATACTCATTTGTTCACTGCAAGATAACTGGGACTGGAAGTGGAACATATTTGGGCAGGGCTTGGAGGACCAATCCCATGGTGGTCTATGCCTACACCAGCATGACCAAGGTCATCAACCCTGCAGGATGGAGCGACAATAACCACCCCGAACGTGACAGCACTGTGTTCTATGGAGAGTACAAGTGTTCGGGTCCAGGTTCAAGTGCTGTTGGGAGAGAAAAATACACCAAACATTTAACGGACGAACAAATCAAACCTTTCCTAAGCCTTGGCTATATTCAGGGTTCCAAATGGCTGCTTCCTCCTCCAAATCCCAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

365

Amino Acids

39.54

Weight (kDa)

9.08

Isoelectric Point (pI)

21.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	331
AciI	CCGC	4 cut(s)	62, 145, 329, 331
AcuI	CTGAAG	1 cut(s)	741
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	6 cut(s)	81, 134, 290, 308, 563, 950
AfiI	CCNNNNNNNGG	2 cut(s)	172, 330
AflIII	ACRYGT	2 cut(s)	277, 700
AgsI	TTSAA	6 cut(s)	115, 229, 625, 641, 688, 972
AjnI	CCWGG	2 cut(s)	585, 964
AluBI	AGCT	4 cut(s)	17, 464, 574, 755
AluI	AGCT	4 cut(s)	17, 464, 574, 755
Alw26I	GTCTC	1 cut(s)	681
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	3 cut(s)	14, 461, 1066
AseI	ATTAAT	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	2 cut(s)	837, 962
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	2 cut(s)	837, 962
BaeGI	GKGCMC	1 cut(s)	152
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	26, 473, 1053
BccI	CCATC	3 cut(s)	242, 494, 891
BceAI	ACGGC	2 cut(s)	115, 158
BciT130I	CCWGG	2 cut(s)	587, 966
BciVI	GTATCC	2 cut(s)	757, 764
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	681
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	891
BfuI	GTATCC	2 cut(s)	757, 764
BisI	GCNGC	3 cut(s)	15, 462, 1067
BlsI	GCNGC	3 cut(s)	16, 463, 1068
Bme1390I	CCNGG	2 cut(s)	587, 966
Bme18I	GGWCC	2 cut(s)	837, 962
BmgT120I	GGNCC	2 cut(s)	837, 962
BmiI	GGNNCC	2 cut(s)	963, 1057
BmrFI	CCNGG	2 cut(s)	587, 966
BmrI	ACTGGG	2 cut(s)	71, 807
BmuI	ACTGGG	2 cut(s)	71, 807
BoxI	GACNNNNGTC	1 cut(s)	878
Bpu10I	CCTNAGC	2 cut(s)	177, 1034
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	6 cut(s)	57, 329, 491, 846, 876, 1039
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 330
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	4 cut(s)	77, 772, 802, 808
BseBI	CCWGG	2 cut(s)	587, 966
BseDI	CCNNGG	6 cut(s)	57, 329, 491, 846, 876, 1039
BseGI	GGATG	3 cut(s)	70, 398, 902
BseLI	CCNNNNNNNGG	2 cut(s)	172, 330
BseMII	CTCAG	3 cut(s)	168, 684, 765
BseNI	ACTGG	4 cut(s)	77, 772, 802, 808
BseRI	GAGGAG	1 cut(s)	1065
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	26, 473, 1053
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	2 cut(s)	761, 814
BslI	CCNNNNNNNGG	2 cut(s)	172, 330
BsmAI	GTCTC	1 cut(s)	681
BsmFI	GGGAC	2 cut(s)	761, 814
BsmI	GAATGC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp1407I	TGTACA	2 cut(s)	288, 561
Bsp143I	GATC	1 cut(s)	67
Bsp19I	CCATGG	2 cut(s)	57, 846
BspACI	CCGC	4 cut(s)	62, 145, 329, 331
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	3 cut(s)	169, 685, 764
BspFNI	CGCG	1 cut(s)	331
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	963, 1057
BspMAI	CTGCAG	1 cut(s)	895
BsrFI	RCCGGY	1 cut(s)	263
BsrGI	TGTACA	2 cut(s)	288, 561
BsrI	ACTGG	4 cut(s)	77, 772, 802, 808
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	6 cut(s)	57, 329, 491, 846, 876, 1039
BssMI	GATC	1 cut(s)	67
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	5 cut(s)	57, 491, 846, 876, 1039
Bst2UI	CCWGG	2 cut(s)	587, 966
Bst4CI	ACNGT	6 cut(s)	418, 425, 433, 649, 727, 934
Bst6I	CTCTTC	2 cut(s)	44, 490
BstACI	GRCGYC	1 cut(s)	6
BstAUI	TGTACA	2 cut(s)	288, 561
BstC8I	GCNNGC	4 cut(s)	265, 394, 522, 572
BstDEI	CTNAG	4 cut(s)	177, 693, 751, 1034
BstDSI	CCRYGG	3 cut(s)	57, 329, 846
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	3 cut(s)	70, 398, 902
BstFNI	CGCG	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	681
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	587, 966
BstNSI	RCATGY	1 cut(s)	704
BstPAI	GACNNNNGTC	1 cut(s)	878
BstSCI	CCNGG	2 cut(s)	585, 964
BstSFI	CTRYAG	1 cut(s)	891
BstSLI	GKGCMC	1 cut(s)	152
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	3 cut(s)	26, 473, 1053
BstXI	CCANNNNNNTGG	3 cut(s)	58, 410, 847
BsuI	GTATCC	2 cut(s)	757, 764
BsuRI	GGCC	1 cut(s)	496
BtgI	CCRYGG	3 cut(s)	57, 329, 846
BtsCI	GGATG	3 cut(s)	70, 398, 902
BtsI	GCAGTG	3 cut(s)	42, 531, 784
Cac8I	GCNNGC	4 cut(s)	265, 394, 522, 572
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	837, 962
Cfr42I	CCGCGG	1 cut(s)	332
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	6 cut(s)	80, 133, 289, 307, 562, 949
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	7 cut(s)	25, 58, 108, 205, 701, 847, 871
CviQI	GTAC	6 cut(s)	80, 133, 289, 307, 562, 949
DdeI	CTNAG	4 cut(s)	177, 693, 751, 1034
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	44, 490
EarI	CTCTTC	2 cut(s)	44, 490
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	5 cut(s)	57, 491, 846, 876, 1039
Eco47I	GGWCC	2 cut(s)	837, 962
Eco57I	CTGAAG	1 cut(s)	741
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	585, 964
EcoT14I	CCWWGG	5 cut(s)	57, 491, 846, 876, 1039
ErhI	CCWWGG	5 cut(s)	57, 491, 846, 876, 1039
FaeI	CATG	7 cut(s)	28, 61, 111, 208, 704, 850, 874
FalI	AAGNNNNNCTT	4 cut(s)	542, 574, 617, 649
FaqI	GGGAC	2 cut(s)	761, 814
FatI	CATG	7 cut(s)	24, 57, 107, 204, 700, 846, 870
FauI	CCCGC	1 cut(s)	138
FauNDI	CATATG	1 cut(s)	659
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	15, 462, 1067
FokI	GGATG	3 cut(s)	77, 385, 909
Fsp4HI	GCNGC	3 cut(s)	15, 462, 1067
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	3 cut(s)	15, 462, 1067
HaeIII	GGCC	1 cut(s)	496
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	520
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	7 cut(s)	28, 61, 111, 208, 704, 850, 874
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	2 cut(s)	443, 749
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	6 cut(s)	103, 135, 221, 289, 421, 784
Hpy188I	TCNGA	2 cut(s)	448, 760
Hpy188III	TCNNGA	2 cut(s)	205, 229
Hpy8I	GTNNAC	6 cut(s)	103, 135, 221, 289, 421, 784
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	6 cut(s)	418, 425, 433, 649, 727, 934
HpyCH4IV	ACGT	3 cut(s)	123, 277, 922
HpyCH4V	TGCA	5 cut(s)	14, 170, 570, 789, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	4 cut(s)	177, 693, 751, 1034
HpySE526I	ACGT	3 cut(s)	123, 277, 922
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	7 cut(s)	28, 61, 111, 208, 704, 850, 874
HspAI	GCGC	1 cut(s)	518
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	67
KspI	CCGCGG	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	2 cut(s)	515, 900
Lsp1109I	GCAGC	3 cut(s)	26, 473, 1053
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	3 cut(s)	123, 277, 922
MaeIII	GTNAC	3 cut(s)	346, 696, 923
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	2 cut(s)	31, 477
MfeI	CAATTG	1 cut(s)	565
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	4 cut(s)	33, 224, 435, 565
MlyI	GAGTC	1 cut(s)	743
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	7 cut(s)	172, 290, 528, 754, 828, 1083, 1086
MroNI	GCCGGC	1 cut(s)	263
MseI	TTAA	6 cut(s)	20, 32, 249, 477, 722, 1007
MslI	CAYNNNNRTG	2 cut(s)	56, 869
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	587, 966
MunI	CAATTG	1 cut(s)	565
Mva1269I	GAATGC	1 cut(s)	255
MvaI	CCWGG	2 cut(s)	587, 966
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	1 cut(s)	265
NcoI	CCATGG	2 cut(s)	57, 846
NdeI	CATATG	1 cut(s)	659
NdeII	GATC	1 cut(s)	67
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	7 cut(s)	28, 61, 111, 208, 704, 850, 874
NlaIV	GGNNCC	2 cut(s)	963, 1057
NmuCI	GTSAC	1 cut(s)	923
NspI	RCATGY	1 cut(s)	704
PagI	TCATGA	1 cut(s)	204
PciI	ACATGT	1 cut(s)	700
PctI	GAATGC	1 cut(s)	255
PdiI	GCCGGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	443
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	3 cut(s)	16, 463, 1068
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
PscI	ACATGT	1 cut(s)	700
PshAI	GACNNNNGTC	1 cut(s)	878
PshBI	ATTAAT	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	585, 964
PspGI	CCWGG	2 cut(s)	585, 964
PspN4I	GGNNCC	2 cut(s)	963, 1057
PspPI	GGNCC	2 cut(s)	837, 962
PstI	CTGCAG	1 cut(s)	895
RsaI	GTAC	6 cut(s)	81, 134, 290, 308, 563, 950
RsaNI	GTAC	6 cut(s)	80, 133, 289, 307, 562, 949
RseI	CAYNNNNRTG	2 cut(s)	56, 869
SacII	CCGCGG	1 cut(s)	332
SaqAI	TTAA	6 cut(s)	20, 32, 249, 477, 722, 1007
SatI	GCNGC	3 cut(s)	15, 462, 1067
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	2 cut(s)	837, 962
SbfI	CCTGCAGG	1 cut(s)	895
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	2 cut(s)	587, 966
SdaI	CCTGCAGG	1 cut(s)	895
SduI	GDGCHC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	891
Sfr303I	CCGCGG	1 cut(s)	332
SgrBI	CCGCGG	1 cut(s)	332
SinI	GGWCC	2 cut(s)	837, 962
SmiMI	CAYNNNNRTG	2 cut(s)	56, 869
Sse8387I	CCTGCAGG	1 cut(s)	895
Sse9I	AATT	4 cut(s)	33, 224, 435, 565
SsiI	CCGC	4 cut(s)	62, 145, 329, 331
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	585, 964
StyI	CCWWGG	5 cut(s)	57, 491, 846, 876, 1039
TaaI	ACNGT	6 cut(s)	418, 425, 433, 649, 727, 934
TaiI	ACGT	3 cut(s)	126, 280, 925
TasI	AATT	4 cut(s)	33, 224, 435, 565
TatI	WGTACW	4 cut(s)	288, 306, 561, 948
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	6 cut(s)	20, 32, 249, 477, 722, 1007
Tru9I	TTAA	6 cut(s)	20, 32, 249, 477, 722, 1007
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	3 cut(s)	14, 461, 1066
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	3 cut(s)	221, 625, 646
TspGWI	ACGGA	2 cut(s)	228, 1025
VpaK11BI	GGWCC	2 cut(s)	837, 962
VspI	ATTAAT	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	170
XceI	RCATGY	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	2 cut(s)	55, 847
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.