Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

9913853 .. 9915461

Gene Structure 1609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G128200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCTAGAAAAAACACATGCTTGGATGTCCATGCAGCTCTAATCGTGACATTAATTCTCCTCACCGCCGCTATAGCCGTGGCAAATGATGATACACCGGTACCAGCCGACTACTCCCAAGTTAACACGTGGTTCAATAACAACGTGAAATCGTACAAAGAACGGCAAGGCACGCTTGACCCTGCCCTTGTAACGGCTGAGGTTGGTCAAACCGTAGTCAAGGTTATGAAAGATGGAAGTGGAGAATTCAAGACCATCACTGACGCTGTTAATAGCATTCCGGCCGACAACACCAAACGTGTCATTGTGTACATTGGAGGGGGAGAGTACAATGAAAAAATCACAATTCCACGGAATAAACCATTTGTTACATTTTATGGCTCTCCAACAAATATGCCAACTTTGACCTTTTCTAGCGGAGCCCCAAAGTATGGAACTATGGATAGTGCCACAGTGATTGCCGAATCCGACTACTTCGTGGCAGTTAACCTTATTATTAAGAACTCTTCACCAAAGCCAGCTAGGAATAGCGTGGGACAACAGGCATTGGCATTGAGGGTGTCGGGGACCAAGTCAGCCTTGTTCAATTGCAGACTGATTGGTTTCCAAGACACACTTTGTGATGACAAGGGAAATCATTTTTTCAAGGACTGCTTTATTGAAGGCACTGTGGATTTCATCTTTGGAAGTGGAAAGTCTCTCTATTTGAACACTGAGTTACATGTGTTGGGGGATAATGAAATGACAGTGATAACAGCACAAGCAAGGGACTCAGCTTCAGAGGATACTGGATACTCATTTGTCCACTGCAACATAACTGGGACTGGAAATGGCACGTATTTGGGCAGGGCTTGGAGGATCAGTCCTAGGGTGGTCTTTGCCTACACCGGCATGTCCGAGGTCATCACCCCAGCCGGTTGGAACAACAAGAACCGCCCCGAACGTGACAGCACCGTGTTCTATGGAGAATACAAGTGTTCGGGTCCAGGTTCAAATATGGTTGGGAGAGTAAAATACGCCAAACAACTGAATGAGGAACAAATCAAACCTTTCCTCAACCTTGGCTATATTCAGGGTTCCAAATGGCTGCTTCCTCCTCCAAATCCAAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

372

Amino Acids

40.52

Weight (kDa)

8.38

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	4 cut(s)	66, 69, 417, 934
AclWI	GGATC	1 cut(s)	866
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	762
AcvI	CACGTG	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	4 cut(s)	102, 155, 311, 329
AfiI	CCNNNNNNNGG	2 cut(s)	193, 431
AflIII	ACRYGT	3 cut(s)	126, 298, 721
AgeI	ACCGGT	1 cut(s)	97
AgsI	TTSAA	7 cut(s)	136, 250, 586, 646, 662, 709, 993
AjnI	CCWGG	1 cut(s)	985
AluBI	AGCT	3 cut(s)	38, 521, 776
AluI	AGCT	3 cut(s)	38, 521, 776
Alw26I	GTCTC	1 cut(s)	702
AlwI	GGATC	1 cut(s)	866
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	35, 1087
ApoI	RAATTY	1 cut(s)	245
AseI	ATTAAT	1 cut(s)	53
AsiGI	ACCGGT	1 cut(s)	97
Asp718I	GGTACC	1 cut(s)	100
AspA2I	CCTAGG	1 cut(s)	866
AspS9I	GGNCC	2 cut(s)	567, 983
AsuHPI	GGTGA	3 cut(s)	55, 501, 898
AvaII	GGWCC	2 cut(s)	567, 983
AvrII	CCTAGG	1 cut(s)	866
BaeI	ACNNNNGTAYC	4 cut(s)	84, 84, 117, 117
BanI	GGYRCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	424
BbrPI	CACGTG	1 cut(s)	129
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	47, 1074
BccI	CCATC	2 cut(s)	227, 263
BceAI	ACGGC	3 cut(s)	62, 179, 210
BciT130I	CCWGG	1 cut(s)	987
BciVI	GTATCC	2 cut(s)	778, 785
BcoDI	GTCTC	1 cut(s)	702
BfaI	CTAG	4 cut(s)	6, 414, 522, 867
BfmI	CTRYAG	1 cut(s)	72
BfuI	GTATCC	2 cut(s)	778, 785
BisI	GCNGC	3 cut(s)	36, 69, 1088
BlnI	CCTAGG	1 cut(s)	866
BlsI	GCNGC	3 cut(s)	37, 70, 1089
Bme1390I	CCNGG	1 cut(s)	987
Bme18I	GGWCC	2 cut(s)	567, 983
BmgT120I	GGNCC	2 cut(s)	567, 983
BmiI	GGNNCC	5 cut(s)	102, 421, 568, 984, 1078
BmrFI	CCNGG	1 cut(s)	987
BmrI	ACTGGG	1 cut(s)	828
BmuI	ACTGGG	1 cut(s)	828
Bpu10I	CCTNAGC	1 cut(s)	198
BsaAI	YACGTR	2 cut(s)	129, 837
BsaJI	CCNNGG	5 cut(s)	78, 350, 866, 897, 1060
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	847, 877
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 431
Bse118I	RCCGGY	3 cut(s)	97, 887, 914
Bse1I	ACTGG	3 cut(s)	793, 823, 829
BseBI	CCWGG	1 cut(s)	987
BseDI	CCNNGG	5 cut(s)	78, 350, 866, 897, 1060
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	193, 431
BseMII	CTCAG	3 cut(s)	189, 705, 786
BseNI	ACTGG	3 cut(s)	793, 823, 829
BseRI	GAGGAG	2 cut(s)	50, 1086
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	2 cut(s)	47, 1074
BseYI	CCCAGC	1 cut(s)	910
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	100
BshTI	ACCGGT	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	285
BsiSI	CCGG	4 cut(s)	98, 281, 888, 915
BslFI	GGGAC	4 cut(s)	549, 580, 782, 835
BslI	CCNNNNNNNGG	2 cut(s)	193, 431
BsmAI	GTCTC	1 cut(s)	702
BsmFI	GGGAC	4 cut(s)	549, 580, 782, 835
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	858
BspACI	CCGC	4 cut(s)	66, 69, 417, 934
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	3 cut(s)	190, 706, 785
BspLI	GGNNCC	5 cut(s)	102, 421, 568, 984, 1078
BspPI	GGATC	1 cut(s)	866
BspT107I	GGYRCC	1 cut(s)	100
BsrFI	RCCGGY	3 cut(s)	97, 887, 914
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	3 cut(s)	793, 823, 829
BssAI	RCCGGY	3 cut(s)	97, 887, 914
BssECI	CCNNGG	5 cut(s)	78, 350, 866, 897, 1060
BssMI	GATC	1 cut(s)	858
BssT1I	CCWWGG	2 cut(s)	866, 1060
Bst2UI	CCWGG	1 cut(s)	987
Bst4CI	ACNGT	5 cut(s)	214, 454, 670, 748, 955
Bst6I	CTCTTC	1 cut(s)	511
BstAUI	TGTACA	1 cut(s)	309
BstBAI	YACGTR	2 cut(s)	129, 837
BstC8I	GCNNGC	2 cut(s)	173, 519
BstDEI	CTNAG	3 cut(s)	198, 714, 772
BstDSI	CCRYGG	2 cut(s)	78, 350
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	861
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	1 cut(s)	858
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 172
BstNI	CCWGG	1 cut(s)	987
BstNSI	RCATGY	3 cut(s)	21, 725, 895
BstSCI	CCNGG	1 cut(s)	985
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	47, 1074
BstXI	CCANNNNNNTGG	1 cut(s)	918
BstZI	CGGCCG	1 cut(s)	282
BsuI	GTATCC	2 cut(s)	778, 785
BsuRI	GGCC	1 cut(s)	284
BtgI	CCRYGG	2 cut(s)	78, 350
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	805
BtsIMutI	CAGTG	6 cut(s)	258, 459, 666, 711, 753, 805
Cac8I	GCNNGC	2 cut(s)	173, 519
Cfr10I	RCCGGY	3 cut(s)	97, 887, 914
Cfr13I	GGNCC	2 cut(s)	567, 983
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	4 cut(s)	101, 154, 310, 328
CspAI	ACCGGT	1 cut(s)	97
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	4 cut(s)	18, 32, 722, 892
CviQI	GTAC	4 cut(s)	101, 154, 310, 328
DdeI	CTNAG	3 cut(s)	198, 714, 772
DpnI	GATC	1 cut(s)	860
DpnII	GATC	1 cut(s)	858
DraIII	CACNNNGTG	1 cut(s)	620
EaeI	YGGCCR	1 cut(s)	282
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	511
EclXI	CGGCCG	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	866, 1060
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	567, 983
Eco52I	CGGCCG	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	762
Eco72I	CACGTG	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	985
EcoT14I	CCWWGG	2 cut(s)	866, 1060
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	2 cut(s)	866, 1060
FaeI	CATG	4 cut(s)	21, 35, 725, 895
FalI	AAGNNNNNCTT	8 cut(s)	159, 191, 563, 595, 600, 632, 638, 670
FaqI	GGGAC	4 cut(s)	549, 580, 782, 835
FatI	CATG	4 cut(s)	17, 31, 721, 891
Fnu4HI	GCNGC	3 cut(s)	36, 69, 1088
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	3 cut(s)	36, 69, 1088
FspBI	CTAG	4 cut(s)	6, 414, 522, 867
GluI	GCNGC	3 cut(s)	36, 69, 1088
GsaI	CCCAGC	1 cut(s)	914
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	4 cut(s)	98, 281, 888, 915
HgaI	GACGC	1 cut(s)	272
Hin1II	CATG	4 cut(s)	21, 35, 725, 895
HincII	GTYRAC	2 cut(s)	124, 487
HindII	GTYRAC	2 cut(s)	124, 487
HinfI	GANTC	2 cut(s)	464, 770
HpaI	GTTAAC	2 cut(s)	124, 487
HpaII	CCGG	4 cut(s)	98, 281, 888, 915
HphI	GGTGA	3 cut(s)	55, 501, 898
Hpy166II	GTNNAC	4 cut(s)	124, 310, 487, 805
Hpy188I	TCNGA	3 cut(s)	469, 781, 898
Hpy188III	TCNNGA	2 cut(s)	46, 250
Hpy8I	GTNNAC	4 cut(s)	124, 310, 487, 805
HpyAV	CCTTC	1 cut(s)	656
HpyCH4III	ACNGT	5 cut(s)	214, 454, 670, 748, 955
HpyCH4IV	ACGT	5 cut(s)	128, 144, 298, 836, 943
HpyCH4V	TGCA	3 cut(s)	35, 591, 810
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 172
HpyF3I	CTNAG	3 cut(s)	198, 714, 772
HpySE526I	ACGT	5 cut(s)	128, 144, 298, 836, 943
Hsp92II	CATG	4 cut(s)	21, 35, 725, 895
KpnI	GGTACC	1 cut(s)	104
KspAI	GTTAAC	2 cut(s)	124, 487
Kzo9I	GATC	1 cut(s)	858
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	2 cut(s)	47, 1074
MaeI	CTAG	4 cut(s)	6, 414, 522, 867
MaeII	ACGT	5 cut(s)	128, 144, 298, 836, 943
MaeIII	GTNAC	5 cut(s)	46, 190, 367, 717, 944
MalI	GATC	1 cut(s)	860
MboI	GATC	1 cut(s)	858
MboII	GAAGA	1 cut(s)	498
MfeI	CAATTG	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	4 cut(s)	54, 245, 345, 586
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	3 cut(s)	410, 492, 899
MseI	TTAA	5 cut(s)	53, 123, 270, 486, 498
MslI	CAYNNNNRTG	1 cut(s)	890
MspI	CCGG	4 cut(s)	98, 281, 888, 915
MspR9I	CCNGG	1 cut(s)	987
MunI	CAATTG	1 cut(s)	586
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	987
MwoI	GCNNNNNNNGC	2 cut(s)	74, 172
NdeII	GATC	1 cut(s)	858
NlaIII	CATG	4 cut(s)	21, 35, 725, 895
NlaIV	GGNNCC	5 cut(s)	102, 421, 568, 984, 1078
NmuCI	GTSAC	2 cut(s)	46, 944
NspI	RCATGY	3 cut(s)	21, 725, 895
PciI	ACATGT	1 cut(s)	721
PctI	GAATGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	464
PflFI	GACNNNGTC	1 cut(s)	571
PflMI	CCANNNNNTGG	1 cut(s)	431
PinAI	ACCGGT	1 cut(s)	97
PkrI	GCNGC	3 cut(s)	37, 70, 1089
PleI	GAGTC	1 cut(s)	764
PmaCI	CACGTG	1 cut(s)	129
PmlI	CACGTG	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	764
Ppu21I	YACGTR	2 cut(s)	129, 837
PscI	ACATGT	1 cut(s)	721
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	985
PspCI	CACGTG	1 cut(s)	129
PspFI	CCCAGC	1 cut(s)	910
PspGI	CCWGG	1 cut(s)	985
PspN4I	GGNNCC	5 cut(s)	102, 421, 568, 984, 1078
PspPI	GGNCC	2 cut(s)	567, 983
PsyI	GACNNNGTC	1 cut(s)	571
RsaI	GTAC	4 cut(s)	102, 155, 311, 329
RsaNI	GTAC	4 cut(s)	101, 154, 310, 328
RseI	CAYNNNNRTG	1 cut(s)	890
SaqAI	TTAA	5 cut(s)	53, 123, 270, 486, 498
SatI	GCNGC	3 cut(s)	36, 69, 1088
Sau3AI	GATC	1 cut(s)	858
Sau96I	GGNCC	2 cut(s)	567, 983
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	1 cut(s)	987
SduI	GDGCHC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	567, 983
SmiMI	CAYNNNNRTG	1 cut(s)	890
Sse9I	AATT	4 cut(s)	54, 245, 345, 586
SsiI	CCGC	4 cut(s)	66, 69, 417, 934
SspMI	CTAG	4 cut(s)	6, 414, 522, 867
StyD4I	CCNGG	1 cut(s)	985
StyI	CCWWGG	2 cut(s)	866, 1060
TaaI	ACNGT	5 cut(s)	214, 454, 670, 748, 955
TaiI	ACGT	5 cut(s)	131, 147, 301, 839, 946
TasI	AATT	4 cut(s)	54, 245, 345, 586
TatI	WGTACW	2 cut(s)	309, 327
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	5 cut(s)	53, 123, 270, 486, 498
Tru9I	TTAA	5 cut(s)	53, 123, 270, 486, 498
TscAI	CASTG	6 cut(s)	265, 459, 673, 718, 753, 812
TseFI	GTSAC	2 cut(s)	46, 944
TseI	GCWGC	2 cut(s)	35, 1087
Tsp45I	GTSAC	2 cut(s)	46, 944
TspDTI	ATGAA	4 cut(s)	242, 348, 667, 753
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	6 cut(s)	265, 459, 673, 718, 753, 812
Tth111I	GACNNNGTC	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	567, 983
VspI	ATTAAT	1 cut(s)	53
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	3 cut(s)	21, 725, 895
XmaJI	CCTAGG	1 cut(s)	866
XspI	CTAG	4 cut(s)	6, 414, 522, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.