Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Forward (+)

29330883 .. 29342451

Gene Structure 11569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1150400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGCGGGATGAAGAGGCAGTGACATATTTGGGCAGGGCTTGGAGAGGCAAACCCCATATGGTGTATGCCTACACCAACATGACCAAGGTGGTTAACCCTGCCGGCTGGAGCGACGATAACCACCCTGAATCAATGTGGCCTGCGAAGAGTACAAGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

54

Amino Acids

6.04

Weight (kDa)

6.71

Isoelectric Point (pI)

20.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AfaI	GTAC	1 cut(s)	151
AoxI	GGCC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	84
Bse118I	RCCGGY	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	102
BsnI	GGCC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	84
Bst6I	CTCTTC	2 cut(s)	6, 140
BstC8I	GCNNGC	2 cut(s)	103, 141
BstF5I	GGATG	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	103, 141
Cfr10I	RCCGGY	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	3 cut(s)	38, 105, 139
CviKI_1	RGCY	3 cut(s)	38, 105, 139
CviQI	GTAC	1 cut(s)	150
Eam1104I	CTCTTC	2 cut(s)	6, 140
EarI	CTCTTC	2 cut(s)	6, 140
Eco130I	CCWWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	82
FaiI	YATR	6 cut(s)	25, 57, 59, 66, 80, 160
FatI	CATG	1 cut(s)	78
FauNDI	CATATG	1 cut(s)	57
FokI	GGATG	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	128
HpaI	GTTAAC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	82
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
KspAI	GTTAAC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	6 cut(s)	19, 91, 111, 115, 138, 153
MaeIII	GTNAC	1 cut(s)	19
MboII	GAAGA	2 cut(s)	23, 157
MnlI	CCTC	2 cut(s)	7, 38
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	1 cut(s)	102
NaeI	GCCGGC	1 cut(s)	103
NdeI	CATATG	1 cut(s)	57
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	19
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	93
SetI	ASST	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	77
SsiI	CCGC	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	84
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.