Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_51

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

8744 .. 10243

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I005200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

GACCACCCCCAAGTCAACACGTGGTTCAATAACAATGTCAATCCATACAAAGAACGGCAGGGCACGCTTGACCCTGCCCTTGTAACGGCTGAGGTTGGTCAAACCGTCGTCAAGGTTATGAAAGATAGAAGTGGAGAATTCAAGACCATCACTGGCGCTGTTAATAGCATTCCGGTCGACAACACCAAACGTGTCATTGTGTACATTGGAGGGGGAGAGTACAATGAGAAAATCACAATTCCACGGAATAAATCATTTGTTACATTTTATGGCTCTCCAACAAATATACCAACTTTGACCTTTGCTGGCACAGCCCAAAAGTATGGAACTGTGGACAGTGCCACAGTGATTGCCGAATCCGACTACTTTGTGGCAGCTAACCTAATTATTAAGAACTCTTCGCCAAAGCCAGATGGGAAAAGAGTGGGAGAACAGGCATTGGCATTGAGAGTGTCGGGGAACAAGTCAGCCTTGTTCAATTGCAGGCTGATTGGTTTCCAAGACACACTTTGTGATGACAAGGGCAATCATTTTTTCCAGGACTGCTTTATTGAAGGCACTGTGGATTTCATCTTTGGAAGTGGAAAGTCTCTCTATTTGTTACATGTGCTGGGGAATAATGAAATGACAGTGATAATAGCACAAGCAAGGAACTCAGCTTCAGAAGATACTGGATACTCATTTGTCCACTGCAACATAACTGGGACTGGAAATGGCACGTATTTGGGCAGGGCTTGGAGGACTAGTCCCAGGGTGGTCTTTGCCTACACCAGCATGTCTGAGGTCATCACCCCAGCCGACTGGAACAACAAGAACCGCCCCAAACGTGACAGAACCGTGTTCTATGGAGAATACAAGTGTTCGGGTCCAGCTTCAAGTATGGTTGGGAGAGTAAAATACACCAAACAGCTGAATGAGGAACAAATCAAACCTTTCCTCAGCTTGAGCTATATTCAAAGTTCCAAATGGCTGCTTCCTCCTCCAAATCCAAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

333

Amino Acids

36.72

Weight (kDa)

9.12

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	1 cut(s)	817
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	645
AcvI	CACGTG	1 cut(s)	21
AdeI	CACNNNGTG	1 cut(s)	512
AfaI	GTAC	2 cut(s)	203, 221
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	3 cut(s)	18, 190, 604
AgsI	TTSAA	6 cut(s)	28, 142, 478, 554, 876, 956
AhlI	ACTAGT	1 cut(s)	743
AjnI	CCWGG	2 cut(s)	537, 749
AluBI	AGCT	6 cut(s)	377, 659, 872, 910, 942, 948
AluI	AGCT	6 cut(s)	377, 659, 872, 910, 942, 948
Alw26I	GTCTC	1 cut(s)	594
ApeKI	GCWGC	2 cut(s)	374, 970
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	866
AsuHPI	GGTGA	1 cut(s)	781
AvaII	GGWCC	1 cut(s)	866
BaeGI	GKGCMC	1 cut(s)	65
BbrPI	CACGTG	1 cut(s)	21
BbvCI	CCTCAGC	2 cut(s)	90, 938
BbvI	GCAGC	2 cut(s)	386, 957
BccI	CCATC	2 cut(s)	155, 407
BceAI	ACGGC	2 cut(s)	71, 102
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	2 cut(s)	539, 751
BciVI	GTATCC	1 cut(s)	668
BcoDI	GTCTC	1 cut(s)	594
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	668
BisI	GCNGC	2 cut(s)	375, 971
BlsI	GCNGC	2 cut(s)	376, 972
Bme1390I	CCNGG	2 cut(s)	539, 751
Bme18I	GGWCC	1 cut(s)	866
BmgT120I	GGNCC	1 cut(s)	866
BmiI	GGNNCC	1 cut(s)	867
BmrFI	CCNGG	2 cut(s)	539, 751
BmrI	ACTGGG	1 cut(s)	711
BmuI	ACTGGG	1 cut(s)	711
Bpu10I	CCTNAGC	2 cut(s)	90, 938
BpuEI	CTTGAG	1 cut(s)	964
BsaAI	YACGTR	2 cut(s)	21, 720
BsaJI	CCNNGG	3 cut(s)	242, 749, 750
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	5 cut(s)	157, 676, 706, 712, 806
BseBI	CCWGG	2 cut(s)	539, 751
BseDI	CCNNGG	3 cut(s)	242, 749, 750
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	4 cut(s)	81, 669, 771, 952
BseNI	ACTGG	5 cut(s)	157, 676, 706, 712, 806
BseRI	GAGGAG	1 cut(s)	969
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	386, 957
BseYI	CCCAGC	2 cut(s)	610, 793
Bsh1285I	CGRYCG	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	2 cut(s)	718, 732
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	2 cut(s)	718, 732
BsmI	GAATGC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	201
BspACI	CCGC	1 cut(s)	817
BspCNI	CTCAG	4 cut(s)	82, 668, 772, 951
BspLI	GGNNCC	1 cut(s)	867
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	5 cut(s)	157, 676, 706, 712, 806
BssECI	CCNNGG	3 cut(s)	242, 749, 750
Bst2UI	CCWGG	2 cut(s)	539, 751
Bst4CI	ACNGT	7 cut(s)	106, 331, 338, 346, 562, 631, 838
Bst6I	CTCTTC	1 cut(s)	403
BstAUI	TGTACA	1 cut(s)	201
BstBAI	YACGTR	2 cut(s)	21, 720
BstC8I	GCNNGC	3 cut(s)	65, 307, 485
BstDEI	CTNAG	4 cut(s)	90, 655, 780, 938
BstDSI	CCRYGG	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	594
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 311
BstNI	CCWGG	2 cut(s)	539, 751
BstNSI	RCATGY	2 cut(s)	608, 778
BstSCI	CCNGG	2 cut(s)	537, 749
BstSLI	GKGCMC	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	386, 957
BstXI	CCANNNNNNTGG	2 cut(s)	323, 801
BsuI	GTATCC	1 cut(s)	668
BtgI	CCRYGG	1 cut(s)	242
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	6 cut(s)	150, 343, 351, 558, 636, 688
Cac8I	GCNNGC	3 cut(s)	65, 307, 485
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	866
Csp6I	GTAC	2 cut(s)	202, 220
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	2 cut(s)	605, 775
CviQI	GTAC	2 cut(s)	202, 220
DdeI	CTNAG	4 cut(s)	90, 655, 780, 938
DraIII	CACNNNGTG	1 cut(s)	512
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	866
Eco57I	CTGAAG	1 cut(s)	645
Eco72I	CACGTG	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	537, 749
FaeI	CATG	2 cut(s)	608, 778
FalI	AAGNNNNNCTT	4 cut(s)	455, 487, 492, 524
FaqI	GGGAC	2 cut(s)	718, 732
FatI	CATG	2 cut(s)	604, 774
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	375, 971
Fsp4HI	GCNGC	2 cut(s)	375, 971
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	2 cut(s)	375, 971
GsaI	CCCAGC	2 cut(s)	614, 797
HaeII	RGCGCY	1 cut(s)	159
HapII	CCGG	1 cut(s)	173
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	2 cut(s)	608, 778
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	2 cut(s)	16, 178
HindII	GTYRAC	2 cut(s)	16, 178
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	1 cut(s)	781
Hpy166II	GTNNAC	5 cut(s)	16, 178, 202, 334, 688
Hpy188I	TCNGA	3 cut(s)	361, 664, 781
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	5 cut(s)	16, 178, 202, 334, 688
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	548
HpyCH4III	ACNGT	7 cut(s)	106, 331, 338, 346, 562, 631, 838
HpyCH4IV	ACGT	4 cut(s)	20, 190, 719, 826
HpyCH4V	TGCA	2 cut(s)	483, 693
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 311
HpyF3I	CTNAG	4 cut(s)	90, 655, 780, 938
HpySE526I	ACGT	4 cut(s)	20, 190, 719, 826
Hsp92II	CATG	2 cut(s)	608, 778
HspAI	GCGC	1 cut(s)	156
Lsp1109I	GCAGC	2 cut(s)	386, 957
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	4 cut(s)	20, 190, 719, 826
MaeIII	GTNAC	4 cut(s)	82, 259, 600, 827
MboII	GAAGA	2 cut(s)	390, 677
MfeI	CAATTG	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	4 cut(s)	137, 237, 384, 478
MmeI	TCCRAC	2 cut(s)	302, 384
MnlI	CCTC	8 cut(s)	85, 203, 732, 775, 910, 947, 987, 990
MseI	TTAA	2 cut(s)	162, 390
MslI	CAYNNNNRTG	1 cut(s)	773
MspA1I	CMGCKG	1 cut(s)	910
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	539, 751
MunI	CAATTG	1 cut(s)	478
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	2 cut(s)	539, 751
MwoI	GCNNNNNNNGC	2 cut(s)	64, 311
NlaIII	CATG	2 cut(s)	608, 778
NlaIV	GGNNCC	1 cut(s)	867
NmuCI	GTSAC	1 cut(s)	827
NspI	RCATGY	2 cut(s)	608, 778
PasI	CCCWGGG	1 cut(s)	750
PciI	ACATGT	1 cut(s)	604
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	537
PkrI	GCNGC	2 cut(s)	376, 972
PmaCI	CACGTG	1 cut(s)	21
PmlI	CACGTG	1 cut(s)	21
Ppu21I	YACGTR	2 cut(s)	21, 720
PscI	ACATGT	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	537, 749
PspCI	CACGTG	1 cut(s)	21
PspFI	CCCAGC	2 cut(s)	610, 793
PspGI	CCWGG	2 cut(s)	537, 749
PspN4I	GGNNCC	1 cut(s)	867
PspPI	GGNCC	1 cut(s)	866
PvuII	CAGCTG	1 cut(s)	910
RsaI	GTAC	2 cut(s)	203, 221
RsaNI	GTAC	2 cut(s)	202, 220
RseI	CAYNNNNRTG	1 cut(s)	773
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	162, 390
SatI	GCNGC	2 cut(s)	375, 971
Sau96I	GGNCC	1 cut(s)	866
ScrFI	CCNGG	2 cut(s)	539, 751
SduI	GDGCHC	1 cut(s)	65
SinI	GGWCC	1 cut(s)	866
SmiMI	CAYNNNNRTG	1 cut(s)	773
SmlI	CTYRAG	1 cut(s)	943
SmoI	CTYRAG	1 cut(s)	943
SpeI	ACTAGT	1 cut(s)	743
Sse9I	AATT	4 cut(s)	137, 237, 384, 478
SsiI	CCGC	1 cut(s)	817
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	2 cut(s)	537, 749
TaaI	ACNGT	7 cut(s)	106, 331, 338, 346, 562, 631, 838
TaiI	ACGT	4 cut(s)	23, 193, 722, 829
TaqI	TCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	137, 237, 384, 478
TatI	WGTACW	2 cut(s)	201, 219
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	162, 390
Tru9I	TTAA	2 cut(s)	162, 390
TscAI	CASTG	6 cut(s)	157, 343, 351, 565, 636, 695
TseFI	GTSAC	1 cut(s)	827
TseI	GCWGC	2 cut(s)	374, 970
Tsp45I	GTSAC	1 cut(s)	827
TspDTI	ATGAA	3 cut(s)	134, 559, 636
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	6 cut(s)	157, 343, 351, 565, 636, 695
VpaK11BI	GGWCC	1 cut(s)	866
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	2 cut(s)	608, 778
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.