Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Forward (+)

11843737 .. 11856440

Gene Structure 12704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1142600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGTGTATGCCTACACCAACATGACCAAGGTGGTTAGCCCTGCCGGCTGGAGCGACGATAACCACCCTGAATGTAACAACAATGTGGCCTGTGAAGAGTACAAGCGAGGAGGAACTGAGGCTAAAGTACCTCCAATTTGTTCAAGAGGACGCTCATGCCGCAGTTTGCTTCACAAACTTTTACTGTTAGCTTCTATACAGTATGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

71

Amino Acids

7.79

Weight (kDa)

8.42

Isoelectric Point (pI)

68.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	160
AfaI	GTAC	2 cut(s)	101, 129
AgsI	TTSAA	1 cut(s)	144
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
AoxI	GGCC	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	45
BsnI	GGCC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	186, 201
Bst6I	CTCTTC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 159
BsuRI	GGCC	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	44
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	100, 128
CviAII	CATG	2 cut(s)	22, 156
CviJI	RGCY	5 cut(s)	39, 48, 89, 122, 191
CviKI_1	RGCY	5 cut(s)	39, 48, 89, 122, 191
CviQI	GTAC	2 cut(s)	100, 128
DdeI	CTNAG	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	25, 159
FaiI	YATR	5 cut(s)	9, 23, 157, 197, 204
FatI	CATG	2 cut(s)	21, 155
Fnu4HI	GCNGC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	25, 159
HpaII	CCGG	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	186, 201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 159
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	25, 159
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	5 cut(s)	34, 54, 58, 81, 103
MaeIII	GTNAC	1 cut(s)	74
MboII	GAAGA	1 cut(s)	107
MluCI	AATT	1 cut(s)	135
MnlI	CCTC	5 cut(s)	101, 104, 112, 140, 141
MroNI	GCCGGC	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	45, 159
NaeI	GCCGGC	1 cut(s)	46
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	25, 159
PdiI	GCCGGC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	161
RsaI	GTAC	2 cut(s)	101, 129
RsaNI	GTAC	2 cut(s)	100, 128
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	1 cut(s)	160
SetI	ASST	3 cut(s)	33, 133, 193
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	186, 201
TasI	AATT	1 cut(s)	135
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.