Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

27498373 .. 27499484

Gene Structure 1112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1173100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCCGGAAAAACGCCATGCATGTTCATTAATGCATCTCTGATGATAATAACAATTCTGCTCACTTCAAGTACCGCTGCCATCGCCGATGATACGATACCGATACCTTCCGATAGTTCCCAAGTAGCTAGCTGGTTCGATAATAATGTGAAAACCTACAATGAACGAAAGTCAACGCTTGACCCTGCCCTTGTTGCGGCTGAGCATGCTCCCCAGGTCATCAAGGTCATGCAATATGGAGGTGGAAACTTCAAGACCATCACCGACGCCATCAATAGCATTCCAGCCGGGAACACAAAACGCATGTTTGTGTACATCAAAGGGGGAGTGTACAACGAGAAAATCACAATTCCACATAACAAACCCTTTGTTACATTTTATGGATCGCCAAAAAGTATGCCAAATATTACATTTGATGGCACCGCGCAGAAGTATGGGACTGTGTATAGTGGCACATTGATTGTGGAATCAGACTATTTTAGGGCTGTTAATCTTGTTATTATAAATTCAGCGCCGGAGCCGGATGGAATAAGAGAGGGTGCACAGGCAGTTGCAGTGCAGATATCCGGGAACAAGGCAGCCTTCTACAATTGCAAAATGATTGGATATCAGGACACCCTTTATGATTACAAGGGGTTACATTTGTTCAAAGACTGCTTCATTCAAGGCACTGTAGATTTCATATTTAGAAAAGGAAAACCCCTCTACTTGGTACGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

241

Amino Acids

26.39

Weight (kDa)

8.81

Isoelectric Point (pI)

25.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	75 - 232	1.2e-36	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	419
AccII	CGCG	1 cut(s)	425
AciI	CCGC	3 cut(s)	75, 197, 423
AclWI	GGATC	1 cut(s)	391
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	505
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	4 cut(s)	73, 314, 332, 714
AfiI	CCNNNNNNNGG	2 cut(s)	196, 709
AgsI	TTSAA	4 cut(s)	69, 253, 649, 665
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	2 cut(s)	128, 132
AluI	AGCT	2 cut(s)	128, 132
Alw21I	GWGCWC	1 cut(s)	544
Alw44I	GTGCAC	1 cut(s)	540
AlwI	GGATC	1 cut(s)	391
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	540
ApeKI	GCWGC	2 cut(s)	77, 578
ApoI	RAATTY	1 cut(s)	505
AseI	ATTAAT	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	427, 514
AsuC2I	CCSGG	2 cut(s)	289, 568
AsuHPI	GGTGA	1 cut(s)	253
AsuNHI	GCTAGC	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	544
BanI	GGYRCC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	2 cut(s)	64, 590
BccI	CCATC	5 cut(s)	89, 266, 278, 410, 518
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	2 cut(s)	289, 568
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	515
BisI	GCNGC	3 cut(s)	78, 198, 579
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	3 cut(s)	79, 199, 580
Bme1390I	CCNGG	3 cut(s)	215, 289, 568
BmiI	GGNNCC	2 cut(s)	421, 519
BmrFI	CCNGG	3 cut(s)	215, 289, 568
BmsI	GCATC	1 cut(s)	44
BmtI	GCTAGC	1 cut(s)	132
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuMI	CCSGG	2 cut(s)	289, 568
BsaAI	YACGTR	1 cut(s)	716
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 709
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	2 cut(s)	196, 709
BseMII	CTCAG	1 cut(s)	192
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	2 cut(s)	64, 590
BsgI	GTGCAG	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	425
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	544
BsiSI	CCGG	5 cut(s)	6, 288, 515, 521, 567
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	196, 709
BsmFI	GGGAC	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp1407I	TGTACA	2 cut(s)	312, 330
Bsp143I	GATC	1 cut(s)	383
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	3 cut(s)	75, 197, 423
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	425
BspLI	GGNNCC	2 cut(s)	421, 519
BspOI	GCTAGC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	419
BsrGI	TGTACA	2 cut(s)	312, 330
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	383
BssNI	GRCGYC	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	442, 673
BstACI	GRCGYC	1 cut(s)	267
BstAUI	TGTACA	2 cut(s)	312, 330
BstBAI	YACGTR	1 cut(s)	716
BstC8I	GCNNGC	2 cut(s)	130, 207
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	425
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	2 cut(s)	427, 514
BstKTI	GATC	1 cut(s)	386
BstMBI	GATC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 194, 206
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	3 cut(s)	25, 209, 307
BstSCI	CCNGG	3 cut(s)	213, 287, 566
BstSFI	CTRYAG	1 cut(s)	672
BstSLI	GKGCMC	1 cut(s)	544
BstSNI	TACGTA	1 cut(s)	716
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	2 cut(s)	64, 590
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	529
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	561, 669
Cac8I	GCNNGC	2 cut(s)	130, 207
CfoI	GCGC	2 cut(s)	427, 514
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	4 cut(s)	72, 313, 331, 713
CviAII	CATG	5 cut(s)	18, 22, 206, 229, 304
CviJI	RGCY	8 cut(s)	5, 128, 132, 200, 287, 485, 520, 581
CviKI_1	RGCY	8 cut(s)	5, 128, 132, 200, 287, 485, 520, 581
CviQI	GTAC	4 cut(s)	72, 313, 331, 713
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	385
DpnII	GATC	1 cut(s)	383
EaeI	YGGCCR	1 cut(s)	3
Eco105I	TACGTA	1 cut(s)	716
Eco32I	GATATC	2 cut(s)	564, 608
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	2 cut(s)	564, 608
EcoT22I	ATGCAT	2 cut(s)	23, 37
FaeI	CATG	5 cut(s)	21, 25, 209, 232, 307
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	5 cut(s)	17, 21, 205, 228, 303
Fnu4HI	GCNGC	3 cut(s)	78, 198, 579
FokI	GGATG	1 cut(s)	536
Fsp4HI	GCNGC	3 cut(s)	78, 198, 579
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	2 cut(s)	426, 513
GluI	GCNGC	3 cut(s)	78, 198, 579
HaeII	RGCGCY	1 cut(s)	515
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	5 cut(s)	6, 288, 515, 521, 567
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	2 cut(s)	427, 514
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	21, 25, 209, 232, 307
Hin6I	GCGC	2 cut(s)	425, 512
HinP1I	GCGC	2 cut(s)	425, 512
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	5 cut(s)	6, 288, 515, 521, 567
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	4 cut(s)	174, 313, 331, 542
Hpy188I	TCNGA	3 cut(s)	42, 112, 472
Hpy188III	TCNNGA	2 cut(s)	253, 611
Hpy8I	GTNNAC	4 cut(s)	174, 313, 331, 542
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	117, 592
HpyCH4III	ACNGT	2 cut(s)	442, 673
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	7 cut(s)	21, 35, 232, 542, 554, 559, 594
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 194, 206
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	715
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	21, 25, 209, 232, 307
HspAI	GCGC	2 cut(s)	425, 512
Kzo9I	GATC	1 cut(s)	383
LmnI	GCTCC	2 cut(s)	214, 517
Lsp1109I	GCAGC	2 cut(s)	64, 590
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	2 cut(s)	370, 636
MalI	GATC	1 cut(s)	385
MboI	GATC	1 cut(s)	383
MfeI	CAATTG	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	5 cut(s)	54, 348, 505, 589, 718
MnlI	CCTC	3 cut(s)	233, 529, 713
Mph1103I	ATGCAT	2 cut(s)	23, 37
MseI	TTAA	3 cut(s)	30, 489, 721
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	5 cut(s)	6, 288, 515, 521, 567
MspR9I	CCNGG	3 cut(s)	215, 289, 568
MunI	CAATTG	1 cut(s)	589
Mva1269I	GAATGC	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	3 cut(s)	83, 194, 206
NciI	CCSGG	2 cut(s)	289, 568
NdeII	GATC	1 cut(s)	383
NheI	GCTAGC	1 cut(s)	128
NlaIII	CATG	5 cut(s)	21, 25, 209, 232, 307
NlaIV	GGNNCC	2 cut(s)	421, 519
NsiI	ATGCAT	2 cut(s)	23, 37
NspI	RCATGY	3 cut(s)	25, 209, 307
PaeI	GCATGC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	79, 199, 580
Ppu21I	YACGTR	1 cut(s)	716
PshBI	ATTAAT	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	421, 519
RsaI	GTAC	4 cut(s)	73, 314, 332, 714
RsaNI	GTAC	4 cut(s)	72, 313, 331, 713
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	30, 489, 721
SatI	GCNGC	3 cut(s)	78, 198, 579
Sau3AI	GATC	1 cut(s)	383
ScrFI	CCNGG	3 cut(s)	215, 289, 568
SduI	GDGCHC	1 cut(s)	544
SetI	ASST	8 cut(s)	109, 130, 134, 158, 219, 228, 244, 718
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	1 cut(s)	672
SmiMI	CAYNNNNRTG	1 cut(s)	308
SnaBI	TACGTA	1 cut(s)	716
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	5 cut(s)	54, 348, 505, 589, 718
SsiI	CCGC	3 cut(s)	75, 197, 423
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	213, 287, 566
TaaI	ACNGT	2 cut(s)	442, 673
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	1 cut(s)	138
TasI	AATT	5 cut(s)	54, 348, 505, 589, 718
TatI	WGTACW	2 cut(s)	312, 330
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	30, 489, 721
Tru9I	TTAA	3 cut(s)	30, 489, 721
TscAI	CASTG	2 cut(s)	561, 676
TseI	GCWGC	2 cut(s)	77, 578
TspDTI	ATGAA	4 cut(s)	16, 177, 649, 670
TspRI	CASTG	2 cut(s)	561, 676
VneI	GTGCAC	1 cut(s)	540
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	3 cut(s)	25, 209, 307
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	2 cut(s)	23, 37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.