Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Forward (+)

16228960 .. 16231142

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCGGATGTTGAGAATCTGAACTCTGTTCCGGCGTCGGAAGACACAGAGTATGGATTTAAACGGCCGGAGATGTACAGCACAAACATAGCCAATTCCATAACTTCCTACGCTCGTCATGTTTTTGTTCTTTACAAAACTCCTGAAGCTTGGCTCTCTCACGTCGAAGAAGAAGGTTTACCTCAACGTTTCGCTACGTTGCTTAAAGATCGCAAATCTGATCTTCTTGTTCAGACGAAGCTCAATGTATGTGAAGGTGGTGGATCTGACGGTGATGTTTTGATTTTTCCCGATATGATCAGATACAAGGGGGTTAAGGATACGGATGTGGAAGGTTTCTTTGAAGATGTTCTTGTGAATGGGAAGCCATGGAGTTCTGGGATACAAGAAGAGATATCTGGAACATTTGTATTTGTGTGTACTCATGCTAGTCGTGACAAGAGATGTGGTGTTTGTGGACCAGTGATCTTGGAGAGGTTTAAGCAAGAGATTGGTTCTCGAGGACTGTCGGACCAGATTACACTGAAACGTTGTTCTCATGTTGGACAGCACAAGTATGCTGGTAATTTGATCATCTTCTGTCCTGATTCAGCTGGAAAGATTACTGGCAATTGGTATGGCTATGTAACACCTGATGATGTACCTGAATTGCTTGATCAACATATTGCAAAAGGAGAAATCATACAAAGGATTTGGAGGGGGCAAATGGGTCTACCTGGAGGTGAAGCTGAGAAAGTGCATGAACAGAAAGTTATACCAAATGGTCACGGTGTAGTGAAAGAGGAGAGCAAAGGATTCACAGGAGGATGTTGTCAGGGATCAAACGGTGTTTCGTGTTGCCAAGACGAAACTCCAAAGCCAGAGCCAATCAAGAAAGAAGTAAAAAAGTGTACCATATGGTTCCAGCCTCTTGACAAAGAAGAGCTTTACATTGGAGCTGCTGTGGTTGGAGCCATTGCAACTATAGCCATGGCTTTCACCTTTTTCAAGAGGTCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

333

Amino Acids

36.76

Weight (kDa)

5.7

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suc_Fer-like	PF06999	31 - 234	4.3e-42	Sucrase/ferredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	712
AciI	CCGC	1 cut(s)	5
AclI	AACGTT	2 cut(s)	187, 529
AclWI	GGATC	2 cut(s)	271, 826
AcoI	YGGCCR	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	4 cut(s)	77, 421, 642, 892
AgsI	TTSAA	2 cut(s)	344, 988
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	715
AluBI	AGCT	6 cut(s)	149, 241, 593, 728, 925, 938
AluI	AGCT	6 cut(s)	149, 241, 593, 728, 925, 938
AlwI	GGATC	2 cut(s)	271, 826
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	938
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	458, 511
AsuHPI	GGTGA	3 cut(s)	284, 734, 970
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	2 cut(s)	458, 511
BaeI	ACNNNNGTAYC	2 cut(s)	312, 345
BarI	GAAGNNNNNNTAC	2 cut(s)	162, 194
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	925
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	717
BciVI	GTATCC	2 cut(s)	313, 375
BclI	TGATCA	3 cut(s)	297, 570, 655
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	963
BfuI	GTATCC	2 cut(s)	313, 375
BisI	GCNGC	1 cut(s)	939
BlsI	GCNGC	1 cut(s)	940
Bme1390I	CCNGG	1 cut(s)	717
Bme18I	GGWCC	2 cut(s)	458, 511
BmeT110I	CYCGRG	1 cut(s)	498
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	458, 511
BmiI	GGNNCC	2 cut(s)	902, 952
BmrFI	CCNGG	1 cut(s)	717
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	368, 969
BsaXI	ACNNNNNCTCC	2 cut(s)	927, 957
Bse1I	ACTGG	2 cut(s)	461, 610
Bse3DI	GCAATG	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	2 cut(s)	368, 969
BseGI	GGATG	3 cut(s)	13, 331, 812
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	2 cut(s)	461, 610
BseRI	GAGGAG	1 cut(s)	797
BseX3I	CGGCCG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	925
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	32, 68
BsnI	GGCC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	498
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	8 cut(s)	208, 220, 263, 297, 465, 570, 655, 818
Bsp19I	CCATGG	2 cut(s)	368, 969
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	721
BspLI	GGNNCC	2 cut(s)	902, 952
BspPI	GGATC	2 cut(s)	271, 826
BspQI	GCTCTTC	1 cut(s)	915
BsrDI	GCAATG	1 cut(s)	954
BsrGI	TGTACA	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	461, 610
BssECI	CCNNGG	2 cut(s)	368, 969
BssMI	GATC	8 cut(s)	208, 220, 263, 297, 465, 570, 655, 818
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	368, 969
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	4 cut(s)	272, 507, 770, 827
Bst6I	CTCTTC	2 cut(s)	384, 915
BstACI	GRCGYC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	729
BstDSI	CCRYGG	2 cut(s)	368, 969
BstF5I	GGATG	3 cut(s)	13, 331, 812
BstKTI	GATC	8 cut(s)	211, 223, 266, 300, 468, 573, 658, 821
BstMBI	GATC	8 cut(s)	208, 220, 263, 297, 465, 570, 655, 818
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	965
BstNI	CCWGG	1 cut(s)	717
BstSCI	CCNGG	1 cut(s)	715
BstSFI	CTRYAG	1 cut(s)	963
BstV1I	GCAGC	1 cut(s)	925
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BstZI	CGGCCG	1 cut(s)	65
BsuI	GTATCC	2 cut(s)	313, 375
BsuRI	GGCC	1 cut(s)	67
BtgI	CCRYGG	2 cut(s)	368, 969
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	13, 331, 812
BtsIMutI	CAGTG	2 cut(s)	468, 521
Cfr13I	GGNCC	2 cut(s)	458, 511
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	4 cut(s)	76, 420, 641, 891
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	6 cut(s)	119, 369, 425, 539, 740, 970
CviQI	GTAC	4 cut(s)	76, 420, 641, 891
DdeI	CTNAG	1 cut(s)	729
DpnI	GATC	8 cut(s)	210, 222, 265, 299, 467, 572, 657, 820
DpnII	GATC	8 cut(s)	208, 220, 263, 297, 465, 570, 655, 818
DraI	TTTAAA	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	65
EagI	CGGCCG	1 cut(s)	65
Eam1104I	CTCTTC	2 cut(s)	384, 915
EarI	CTCTTC	2 cut(s)	384, 915
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	368, 969
Eco32I	GATATC	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	458, 511
Eco52I	CGGCCG	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	715
EcoRV	GATATC	1 cut(s)	396
EcoT14I	CCWWGG	2 cut(s)	368, 969
ErhI	CCWWGG	2 cut(s)	368, 969
FaeI	CATG	6 cut(s)	122, 372, 428, 542, 743, 973
FalI	AAGNNNNNCTT	4 cut(s)	336, 368, 909, 941
FatI	CATG	6 cut(s)	118, 368, 424, 538, 739, 969
FauNDI	CATATG	1 cut(s)	896
FbaI	TGATCA	3 cut(s)	297, 570, 655
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	1 cut(s)	939
FokI	GGATG	3 cut(s)	20, 338, 819
Fsp4HI	GCNGC	1 cut(s)	939
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	1 cut(s)	939
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	2 cut(s)	32, 68
HgaI	GACGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	6 cut(s)	122, 372, 428, 542, 743, 973
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	3 cut(s)	16, 587, 795
HpaII	CCGG	2 cut(s)	32, 68
HphI	GGTGA	3 cut(s)	284, 734, 970
Hpy166II	GTNNAC	5 cut(s)	179, 420, 458, 713, 891
Hpy188I	TCNGA	7 cut(s)	21, 40, 220, 234, 268, 302, 511
Hpy188III	TCNNGA	9 cut(s)	143, 290, 399, 434, 498, 584, 871, 911, 988
Hpy8I	GTNNAC	5 cut(s)	179, 420, 458, 713, 891
Hpy99I	CGWCG	2 cut(s)	40, 167
HpyAV	CCTTC	3 cut(s)	167, 248, 326
HpyCH4III	ACNGT	4 cut(s)	272, 507, 770, 827
HpyCH4IV	ACGT	4 cut(s)	162, 187, 197, 529
HpyCH4V	TGCA	3 cut(s)	668, 739, 959
HpyF10VI	GCNNNNNNNGC	1 cut(s)	965
HpyF3I	CTNAG	1 cut(s)	729
HpySE526I	ACGT	4 cut(s)	162, 187, 197, 529
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	6 cut(s)	122, 372, 428, 542, 743, 973
Ksp22I	TGATCA	3 cut(s)	297, 570, 655
Kzo9I	GATC	8 cut(s)	208, 220, 263, 297, 465, 570, 655, 818
LguI	GCTCTTC	1 cut(s)	915
LmnI	GCTCC	2 cut(s)	935, 950
Lsp1109I	GCAGC	1 cut(s)	925
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	4 cut(s)	162, 187, 197, 529
MaeIII	GTNAC	3 cut(s)	434, 625, 764
MalI	GATC	8 cut(s)	210, 222, 265, 299, 467, 572, 657, 820
MboI	GATC	8 cut(s)	208, 220, 263, 297, 465, 570, 655, 818
MboII	GAAGA	8 cut(s)	53, 179, 182, 215, 356, 401, 568, 932
MfeI	CAATTG	1 cut(s)	610
MflI	RGATCY	1 cut(s)	263
MluCI	AATT	4 cut(s)	94, 565, 610, 647
MmeI	TCCRAC	4 cut(s)	18, 489, 523, 928
MnlI	CCTC	9 cut(s)	192, 468, 494, 690, 713, 775, 797, 918, 984
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	5 cut(s)	60, 204, 315, 480, 1000
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	2 cut(s)	32, 68
MspR9I	CCNGG	1 cut(s)	717
MunI	CAATTG	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	717
MwoI	GCNNNNNNNGC	1 cut(s)	965
NcoI	CCATGG	2 cut(s)	368, 969
NdeI	CATATG	1 cut(s)	896
NdeII	GATC	8 cut(s)	208, 220, 263, 297, 465, 570, 655, 818
NlaIII	CATG	6 cut(s)	122, 372, 428, 542, 743, 973
NlaIV	GGNNCC	2 cut(s)	902, 952
NmuCI	GTSAC	2 cut(s)	434, 764
PaeR7I	CTCGAG	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	16, 587, 795
PkrI	GCNGC	1 cut(s)	940
Psp1406I	AACGTT	2 cut(s)	187, 529
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	2 cut(s)	902, 952
PspPI	GGNCC	2 cut(s)	458, 511
PsuI	RGATCY	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	4 cut(s)	77, 421, 642, 892
RsaNI	GTAC	4 cut(s)	76, 420, 641, 891
RseI	CAYNNNNRTG	1 cut(s)	555
SapI	GCTCTTC	1 cut(s)	915
SaqAI	TTAA	5 cut(s)	60, 204, 315, 480, 1000
SatI	GCNGC	1 cut(s)	939
Sau3AI	GATC	8 cut(s)	208, 220, 263, 297, 465, 570, 655, 818
Sau96I	GGNCC	2 cut(s)	458, 511
ScrFI	CCNGG	1 cut(s)	717
SfcI	CTRYAG	1 cut(s)	963
Sfr274I	CTCGAG	1 cut(s)	498
SinI	GGWCC	2 cut(s)	458, 511
SlaI	CTCGAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
Sse9I	AATT	4 cut(s)	94, 565, 610, 647
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	715
StyI	CCWWGG	2 cut(s)	368, 969
TaaI	ACNGT	4 cut(s)	272, 507, 770, 827
TaiI	ACGT	4 cut(s)	165, 190, 200, 532
TaqI	TCGA	2 cut(s)	165, 499
TasI	AATT	4 cut(s)	94, 565, 610, 647
TatI	WGTACW	2 cut(s)	75, 419
TfiI	GAWTC	3 cut(s)	16, 587, 795
Tru1I	TTAA	5 cut(s)	60, 204, 315, 480, 1000
Tru9I	TTAA	5 cut(s)	60, 204, 315, 480, 1000
TscAI	CASTG	2 cut(s)	468, 528
TseFI	GTSAC	2 cut(s)	434, 764
TseI	GCWGC	1 cut(s)	938
Tsp45I	GTSAC	2 cut(s)	434, 764
TspDTI	ATGAA	1 cut(s)	756
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	2 cut(s)	468, 528
VpaK11BI	GGWCC	2 cut(s)	458, 511
XhoI	CTCGAG	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	712
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.