Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Reverse (-)

1630829 .. 1632080

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1025900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGATTCTGGGGTTGTTTTTGTTTGTTGATCAAAGGGGCTTGAAAGAGTCAAATGTGGATAGCTTTGTTGATGATGTCCTTGTGAATGATAGACCATGGGCTTCGGGAGTGCAAGAGTCATTGACTAGCCCCCATGTATTTGCCCTTATATTTGTATACACACATATGAGTCAAGAGGAATGGAATCGTGATAGTGCACGTGTTCGCATTGATAAGTTGAAAGAGGAGTTTGAGATGCGAGGATTGACGAATCAGGTATTTGTTACTGCTTGCTTTCACCTTGAAGGCCACAACTATGCTGGAATATTCACGACCTACGACCCAGATGGAAGCATGACATACCATTGGTATCCATTTGTCAGTCCTGGTTATGTGCCGGAATTGCTTGATGAACATATTGGGAAGGGAGAGATTATAGAACGACATTGGAGGGGCCAAATGGGAGCATCTTCTGATGAAGTTGAAGAAATTAATGACCTGGAACTTCCAAATGGAGAAGAAAATAAGAAAATCGAGGATAAGCCACAAGAAAATGGCAATCAGATTCACCAAGAAAAGGGCAATCAAACTGAGAATAATGAGAACTTTTCAGGCTGTTGCCAGGGTGCTAATAGTGATGGATTTACATACTGCAAAGAAGTAAGTTTGGAGGAGGATGGTGGAAGTGAGGATAAAAAGCCGAAAGAAACCACAAAGTCGTGTGCCAGGAAGGATGCCTTACGGAAGCTGTCAAGCTTGATTGGGAACTGGGAGCAAAGTGACGTTCTCGCAGCTGCTGCCGTGGTTGGAGCAGTGGCAACAGTGGTTGTGGCCTATAGCTTTTACAGAAGGTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

280

Amino Acids

31.39

Weight (kDa)

4.76

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suc_Fer-like	PF06999	13 - 145	3.2e-12	Sucrase/ferredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AcvI	CACGTG	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	556
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	43, 220, 284, 464
AjnI	CCWGG	4 cut(s)	364, 477, 600, 704
AluBI	AGCT	5 cut(s)	63, 727, 735, 773, 819
AluI	AGCT	5 cut(s)	63, 727, 735, 773, 819
Alw21I	GWGCWC	1 cut(s)	199
Alw44I	GTGCAC	1 cut(s)	195
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	3 cut(s)	286, 433, 810
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	3 cut(s)	770, 773, 776
AseI	ATTAAT	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	2 cut(s)	269, 539
BaeGI	GKGCMC	1 cut(s)	199
BbrPI	CACGTG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	3 cut(s)	760, 763, 782
BccI	CCATC	3 cut(s)	320, 611, 650
BceAI	ACGGC	1 cut(s)	764
BciT130I	CCWGG	4 cut(s)	366, 479, 602, 706
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	28
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	814
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	3 cut(s)	771, 774, 777
BlsI	GCNGC	3 cut(s)	772, 775, 778
Bme1390I	CCNGG	4 cut(s)	366, 479, 602, 706
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	4 cut(s)	366, 479, 602, 706
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	3 cut(s)	225, 455, 703
BmuI	ACTGGG	1 cut(s)	757
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	95, 601, 780
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse1I	ACTGG	1 cut(s)	752
BseBI	CCWGG	4 cut(s)	366, 479, 602, 706
BseDI	CCNNGG	3 cut(s)	95, 601, 780
BseGI	GGATG	2 cut(s)	661, 718
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	1 cut(s)	752
BseRI	GAGGAG	2 cut(s)	239, 665
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	3 cut(s)	760, 763, 782
BshFI	GGCC	3 cut(s)	288, 435, 812
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	556
BsnI	GGCC	3 cut(s)	288, 435, 812
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	28
Bsp19I	CCATGG	1 cut(s)	95
BspANI	GGCC	3 cut(s)	288, 435, 812
BspCNI	CTCAG	1 cut(s)	562
BspLI	GGNNCC	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	752
BssECI	CCNNGG	3 cut(s)	95, 601, 780
BssMI	GATC	1 cut(s)	28
BssNAI	GTATAC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	95
Bst1107I	GTATAC	1 cut(s)	157
Bst2UI	CCWGG	4 cut(s)	366, 479, 602, 706
Bst4CI	ACNGT	1 cut(s)	802
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	570
BstDSI	CCRYGG	2 cut(s)	95, 780
BstF5I	GGATG	2 cut(s)	661, 718
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 776
BstNI	CCWGG	4 cut(s)	366, 479, 602, 706
BstSCI	CCNGG	4 cut(s)	364, 477, 600, 704
BstSFI	CTRYAG	1 cut(s)	814
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	3 cut(s)	760, 763, 782
BstZ17I	GTATAC	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	288, 435, 812
BtgI	CCRYGG	2 cut(s)	95, 780
BtsCI	GGATG	2 cut(s)	661, 718
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	2 cut(s)	798, 807
Cac8I	GCNNGC	1 cut(s)	271
CaiI	CAGNNNCTG	1 cut(s)	776
Cfr13I	GGNCC	1 cut(s)	433
CviAII	CATG	3 cut(s)	96, 134, 334
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	95
Eco72I	CACGTG	1 cut(s)	200
EcoRII	CCWGG	4 cut(s)	364, 477, 600, 704
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	3 cut(s)	99, 137, 337
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FatI	CATG	3 cut(s)	95, 133, 333
FauNDI	CATATG	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	771, 774, 777
FokI	GGATG	2 cut(s)	668, 725
Fsp4HI	GCNGC	3 cut(s)	771, 774, 777
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	3 cut(s)	771, 774, 777
HaeIII	GGCC	3 cut(s)	288, 435, 812
HapII	CCGG	1 cut(s)	377
Hin1II	CATG	3 cut(s)	99, 137, 337
HindIII	AAGCTT	1 cut(s)	733
HinfI	GANTC	7 cut(s)	4, 47, 116, 169, 184, 250, 544
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	269, 539
Hpy166II	GTNNAC	2 cut(s)	157, 197
Hpy188I	TCNGA	2 cut(s)	454, 543
Hpy188III	TCNNGA	4 cut(s)	105, 173, 188, 310
Hpy8I	GTNNAC	2 cut(s)	157, 197
HpyAV	CCTTC	4 cut(s)	278, 397, 703, 822
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4IV	ACGT	2 cut(s)	199, 762
HpyCH4V	TGCA	3 cut(s)	112, 197, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 776
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	2 cut(s)	199, 762
Hsp92II	CATG	3 cut(s)	99, 137, 337
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	3 cut(s)	443, 751, 788
Lsp1109I	GCAGC	3 cut(s)	760, 763, 782
LweI	GCATC	3 cut(s)	225, 455, 703
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	2 cut(s)	199, 762
MaeIII	GTNAC	2 cut(s)	262, 758
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	3 cut(s)	441, 476, 509
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	2 cut(s)	380, 468
MlyI	GAGTC	3 cut(s)	56, 125, 178
MmeI	TCCRAC	1 cut(s)	766
MnlI	CCTC	8 cut(s)	169, 217, 233, 423, 508, 643, 646, 661
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	2 cut(s)	164, 294
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	4 cut(s)	366, 479, 602, 706
MvaI	CCWGG	4 cut(s)	366, 479, 602, 706
MwoI	GCNNNNNNNGC	2 cut(s)	382, 776
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	3 cut(s)	99, 137, 337
NlaIV	GGNNCC	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	758
PfeI	GAWTC	4 cut(s)	4, 184, 250, 544
PkrI	GCNGC	3 cut(s)	772, 775, 778
PleI	GAGTC	3 cut(s)	55, 124, 177
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	3 cut(s)	55, 124, 177
Ppu21I	YACGTR	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	471
Psp6I	CCWGG	4 cut(s)	364, 477, 600, 704
PspCI	CACGTG	1 cut(s)	200
PspGI	CCWGG	4 cut(s)	364, 477, 600, 704
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	776
PvuII	CAGCTG	1 cut(s)	773
RseI	CAYNNNNRTG	2 cut(s)	164, 294
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	3 cut(s)	771, 774, 777
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	3 cut(s)	56, 125, 178
ScrFI	CCNGG	4 cut(s)	366, 479, 602, 706
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	3 cut(s)	225, 455, 703
SfcI	CTRYAG	1 cut(s)	814
SmiMI	CAYNNNNRTG	2 cut(s)	164, 294
Sse9I	AATT	2 cut(s)	380, 468
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	4 cut(s)	364, 477, 600, 704
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	802
TaiI	ACGT	2 cut(s)	202, 765
TaqI	TCGA	1 cut(s)	513
TasI	AATT	2 cut(s)	380, 468
TfiI	GAWTC	4 cut(s)	4, 184, 250, 544
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	2 cut(s)	798, 807
TseFI	GTSAC	1 cut(s)	758
TseI	GCWGC	3 cut(s)	770, 773, 776
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	2 cut(s)	405, 471
TspGWI	ACGGA	1 cut(s)	736
TspRI	CASTG	2 cut(s)	798, 807
VneI	GTGCAC	1 cut(s)	195
VspI	ATTAAT	1 cut(s)	471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.