Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Reverse (-)

1197518 .. 1198748

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCAGCAGCCCAACCCAGTTGTTAAGCATGTCCTTGCATGTAAATCCCTTTTTGTGATTCTGACATTGTTTTTGTTTGTTGATCGAAGGGGCTTGAAAGAGTCGGATGTGGACAGCTTTGTTGATGATGTCCTTGTGAATAACAAACCATGGCCTTCTGGAGTGCAAGAGCCGTTGACTGGCTCCCATGTATTTGTATGTGCACATGGTAGTCGAGAGGAATGGCATCATGATAGTGCACGTGTTCTCATTGATAAGTTCGAAGAGGAGGCTGAGCTGCGAGGATTGGCAAATCAGGTATTTGTTACTGCTTGCTATCACACTGGAGGCCACAATGGAAAATTGATTATCTACAGCCCAGGTTCAGATGGAAGCATAACAGGCCATTGGTATGGCGACATCCTTCCTAGTGATGTGCCAGAATTGCTTGATCAGCATATTGGGAAGGGAAAGATTATAGAACGACTTTGGAGGGGCCAAATTGGAGCATCTTCTGATGAAGCTGAAGAAATTAATGACCGGGAGCTTCCAAATGGAGAAGAAAATAAGAAAATCGAGGAGAAGCCACAAGAAAATGGCAATCAGATTTTCCAAGAAAACGACGATCAGATTCAGAATAATGAGAACTTTTCAGGCTGTTGCATAGTGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

218

Amino Acids

24.32

Weight (kDa)

4.81

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	525
AcvI	CACGTG	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	4 cut(s)	117, 277, 503, 526
AluI	AGCT	4 cut(s)	117, 277, 503, 526
Alw21I	GWGCWC	2 cut(s)	205, 241
Alw44I	GTGCAC	2 cut(s)	201, 237
AoxI	GGCC	4 cut(s)	152, 328, 382, 475
ApaLI	GTGCAC	2 cut(s)	201, 237
ApeKI	GCWGC	3 cut(s)	4, 7, 277
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AseI	ATTAAT	1 cut(s)	513
AspS9I	GGNCC	1 cut(s)	475
AsuC2I	CCSGG	1 cut(s)	521
AsuII	TTCGAA	1 cut(s)	261
BaeGI	GKGCMC	2 cut(s)	205, 241
BbrPI	CACGTG	1 cut(s)	242
Bbv12I	GWGCWC	2 cut(s)	205, 241
BbvI	GCAGC	3 cut(s)	16, 19, 264
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	521
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	352
BisI	GCNGC	3 cut(s)	5, 8, 278
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	3 cut(s)	6, 9, 279
Bme1390I	CCNGG	2 cut(s)	360, 521
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	2 cut(s)	184, 476
BmrFI	CCNGG	2 cut(s)	360, 521
BmrI	ACTGGG	1 cut(s)	11
BmsI	GCATC	2 cut(s)	235, 497
BmuI	ACTGGG	1 cut(s)	11
BpmI	CTGGAG	2 cut(s)	180, 345
Bpu1102I	GCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	149, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	3 cut(s)	17, 184, 328
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	149, 358
BseGI	GGATG	2 cut(s)	112, 399
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	3 cut(s)	17, 184, 328
BseRI	GAGGAG	2 cut(s)	281, 572
BseSI	GKGCMC	2 cut(s)	205, 241
BseXI	GCAGC	3 cut(s)	16, 19, 264
BshFI	GGCC	4 cut(s)	154, 330, 384, 477
BsiHKAI	GWGCWC	2 cut(s)	205, 241
BsiSI	CCGG	1 cut(s)	520
BslI	CCNNNNNNNGG	1 cut(s)	179
BsnI	GGCC	4 cut(s)	154, 330, 384, 477
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	205, 241
Bsp143I	GATC	3 cut(s)	82, 430, 604
Bsp1720I	GCTNAGC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	149
BspANI	GGCC	4 cut(s)	154, 330, 384, 477
BspCNI	CTCAG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	184, 476
BspT104I	TTCGAA	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	17, 184, 328
BssECI	CCNNGG	2 cut(s)	149, 358
BssMI	GATC	3 cut(s)	82, 430, 604
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	112, 399
BstKTI	GATC	3 cut(s)	85, 433, 607
BstMBI	GATC	3 cut(s)	82, 430, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	381, 424, 433, 648
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	2 cut(s)	32, 42
BstSCI	CCNGG	2 cut(s)	358, 519
BstSFI	CTRYAG	1 cut(s)	352
BstSLI	GKGCMC	2 cut(s)	205, 241
BstV1I	GCAGC	3 cut(s)	16, 19, 264
BstXI	CCANNNNNNTGG	1 cut(s)	392
BsuRI	GGCC	4 cut(s)	154, 330, 384, 477
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	112, 399
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	313
CciI	TCATGA	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	475
CviAII	CATG	6 cut(s)	29, 39, 150, 188, 206, 230
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	3 cut(s)	84, 432, 606
DpnII	GATC	3 cut(s)	82, 430, 604
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	525
Eco72I	CACGTG	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	6 cut(s)	32, 42, 153, 191, 209, 233
FatI	CATG	6 cut(s)	28, 38, 149, 187, 205, 229
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	3 cut(s)	5, 8, 278
FokI	GGATG	2 cut(s)	119, 386
Fsp4HI	GCNGC	3 cut(s)	5, 8, 278
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	3 cut(s)	5, 8, 278
GsuI	CTGGAG	2 cut(s)	180, 345
HaeIII	GGCC	4 cut(s)	154, 330, 384, 477
HapII	CCGG	1 cut(s)	520
Hin1II	CATG	6 cut(s)	32, 42, 153, 191, 209, 233
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	58, 101, 610
HpaII	CCGG	1 cut(s)	520
Hpy166II	GTNNAC	4 cut(s)	112, 177, 203, 239
Hpy188I	TCNGA	7 cut(s)	63, 106, 367, 496, 585, 609, 615
Hpy188III	TCNNGA	3 cut(s)	159, 215, 230
Hpy8I	GTNNAC	4 cut(s)	112, 177, 203, 239
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	4 cut(s)	81, 165, 413, 439
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	6 cut(s)	4, 38, 166, 203, 239, 642
HpyF10VI	GCNNNNNNNGC	4 cut(s)	381, 424, 433, 648
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	6 cut(s)	32, 42, 153, 191, 209, 233
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	3 cut(s)	82, 430, 604
LmnI	GCTCC	3 cut(s)	188, 485, 523
Lsp1109I	GCAGC	3 cut(s)	16, 19, 264
LweI	GCATC	2 cut(s)	235, 497
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	3 cut(s)	84, 432, 606
MboI	GATC	3 cut(s)	82, 430, 604
MboII	GAAGA	4 cut(s)	275, 483, 518, 551
MhlI	GDGCHC	2 cut(s)	205, 241
MluCI	AATT	4 cut(s)	341, 422, 480, 510
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	7 cut(s)	211, 259, 262, 275, 320, 465, 550
MseI	TTAA	2 cut(s)	24, 513
MslI	CAYNNNNRTG	2 cut(s)	234, 390
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	2 cut(s)	360, 521
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	381, 424, 433, 648
NciI	CCSGG	1 cut(s)	521
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	82, 430, 604
NlaIII	CATG	6 cut(s)	32, 42, 153, 191, 209, 233
NlaIV	GGNNCC	2 cut(s)	184, 476
NspI	RCATGY	2 cut(s)	32, 42
NspV	TTCGAA	1 cut(s)	261
PagI	TCATGA	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	58, 610
PkrI	GCNGC	3 cut(s)	6, 9, 279
PleI	GAGTC	1 cut(s)	109
PmaCI	CACGTG	1 cut(s)	242
PmlI	CACGTG	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	358
PspCI	CACGTG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	184, 476
PspPI	GGNCC	1 cut(s)	475
RseI	CAYNNNNRTG	2 cut(s)	234, 390
SaqAI	TTAA	2 cut(s)	24, 513
SatI	GCNGC	3 cut(s)	5, 8, 278
Sau3AI	GATC	3 cut(s)	82, 430, 604
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	360, 521
SduI	GDGCHC	2 cut(s)	205, 241
SetI	ASST	7 cut(s)	119, 244, 279, 300, 364, 505, 528
SfaNI	GCATC	2 cut(s)	235, 497
SfcI	CTRYAG	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	234, 390
Sse9I	AATT	4 cut(s)	341, 422, 480, 510
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	358, 519
StyI	CCWWGG	1 cut(s)	149
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	4 cut(s)	85, 214, 261, 555
TasI	AATT	4 cut(s)	341, 422, 480, 510
TfiI	GAWTC	2 cut(s)	58, 610
Tru1I	TTAA	2 cut(s)	24, 513
Tru9I	TTAA	2 cut(s)	24, 513
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	3 cut(s)	4, 7, 277
TspDTI	ATGAA	1 cut(s)	513
TspRI	CASTG	1 cut(s)	328
VneI	GTGCAC	2 cut(s)	201, 237
VspI	ATTAAT	1 cut(s)	513
XceI	RCATGY	2 cut(s)	32, 42
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.