Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Reverse (-)

1543284 .. 1547970

Gene Structure 4687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1025500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGCTTCCGGAGTTCGAATGTGGACAGCTTTGTTGATGATGTCCTTGTGAATGACAAGCCATGGGCTTCCGGAGTGCAAGAGTCGTTGACTGGCTCCCATGTATTTGTATGTGCACAAGGTAGTCGAGAGGAATGGATTGGTGATAGTGCACGTGTTCTCATTTATAAGTTTAAAGAGGAGGCTGAGCTACGAGGATTGACGAATCAGGTATTTACTGATGCTTGCTTTCACACTGGAGGCCACGATGGAAATTTGATTATCTATAGCCCAGGTTCAAATGGAAGCATAACGGGCCATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

102

Amino Acids

11.05

Weight (kDa)

4.93

Isoelectric Point (pI)

24.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suc_Fer-like	PF06999	4 - 95	1.6e-08	Sucrase/ferredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AccIII	TCCGGA	2 cut(s)	9, 71
AcsI	RAATTY	1 cut(s)	253
AcvI	CACGTG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	2 cut(s)	30, 190
AluI	AGCT	2 cut(s)	30, 190
Alw21I	GWGCWC	2 cut(s)	118, 154
Alw44I	GTGCAC	2 cut(s)	114, 150
Aor13HI	TCCGGA	2 cut(s)	9, 71
AoxI	GGCC	2 cut(s)	241, 295
ApaLI	GTGCAC	2 cut(s)	114, 150
ApoI	RAATTY	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	17
BaeGI	GKGCMC	2 cut(s)	118, 154
BbrPI	CACGTG	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	118, 154
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	265
BlpI	GCTNAGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	17
BsaAI	YACGTR	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	62, 271
BsaWI	WCCGGW	2 cut(s)	9, 71
Bse1I	ACTGG	2 cut(s)	97, 241
BseAI	TCCGGA	2 cut(s)	9, 71
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	62, 271
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	97, 241
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	2 cut(s)	118, 154
BshFI	GGCC	2 cut(s)	243, 297
BsiHKAI	GWGCWC	2 cut(s)	118, 154
BsiSI	CCGG	2 cut(s)	10, 72
BsnI	GGCC	2 cut(s)	243, 297
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	118, 154
Bsp13I	TCCGGA	2 cut(s)	9, 71
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	62
BspANI	GGCC	2 cut(s)	243, 297
BspCNI	CTCAG	1 cut(s)	178
BspEI	TCCGGA	2 cut(s)	9, 71
BspLI	GGNNCC	1 cut(s)	97
BspT104I	TTCGAA	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	97, 241
BssECI	CCNNGG	2 cut(s)	62, 271
BssT1I	CCWWGG	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	155
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	2 cut(s)	118, 154
BsuRI	GGCC	2 cut(s)	243, 297
BtgI	CCRYGG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	295
CviAII	CATG	2 cut(s)	63, 101
DdeI	CTNAG	1 cut(s)	186
DraI	TTTAAA	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	62
Eco72I	CACGTG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	2 cut(s)	66, 104
FaiI	YATR	6 cut(s)	64, 102, 112, 168, 267, 290
FatI	CATG	2 cut(s)	62, 100
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	243, 297
HapII	CCGG	2 cut(s)	10, 72
Hin1II	CATG	2 cut(s)	66, 104
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	83, 205
HpaII	CCGG	2 cut(s)	10, 72
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	4 cut(s)	25, 90, 116, 152
Hpy188III	TCNNGA	3 cut(s)	10, 72, 128
Hpy8I	GTNNAC	4 cut(s)	25, 90, 116, 152
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	3 cut(s)	79, 116, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	66, 104
Kpn2I	TCCGGA	2 cut(s)	9, 71
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	7 cut(s)	23, 78, 85, 194, 222, 258, 285
LweI	GCATC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	118, 154
MluCI	AATT	1 cut(s)	253
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	5 cut(s)	124, 172, 175, 188, 233
MroI	TCCGGA	2 cut(s)	9, 71
MseI	TTAA	1 cut(s)	174
MspI	CCGG	2 cut(s)	10, 72
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	62
NlaIII	CATG	2 cut(s)	66, 104
NlaIV	GGNNCC	1 cut(s)	97
NspV	TTCGAA	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	91
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	271
PspCI	CACGTG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	2 cut(s)	118, 154
SetI	ASST	6 cut(s)	32, 124, 157, 192, 213, 277
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	17
Sse9I	AATT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	62
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	17, 127
TasI	AATT	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	241
TspRI	CASTG	1 cut(s)	241
VneI	GTGCAC	2 cut(s)	114, 150
XapI	RAATTY	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.