FvH4_6g51500

Altered inheritance of mitochondria protein 32-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001205
Physical Location & Seq
Forward (+)
38173858 .. 38178161
4304 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51500.t1

Sequence Viewer

Length: 1227 bp
ATGCGCGTTGCTCACCCACACCAATTCCGTTTCCTCACAATCGTAACCAACCGCTTCCTCTCTTCTCTCTCTAAACCTCGCCGACCTTCTCTGCTACCTCAAACCCTAGCAATGGCCTCCGACGACCTCTCCTCCTTGCCTCCCGCCGACGACGAGAAGTACGGCTTCCAGAGGCCGGAGATGTTCACCATCAAGCTCGCCGGCACCGTCGACGCCTACGATCGCCACGTCTTCCTCTGCTACAAGAGCCCCGAGGCCTGGCCGGCTCGCGTCGAAGGCTCCGAGTCCGATCCGCTCCCCAAGTTCCTCTCGTCGGCATTCAAGGCCAGGAAGAACGATATCTCCGTCAAGACGAAGCTGACTGTGTGTGAAGGACGCGAAGGAACTGACTTCGCTGACGGTGACGTGTTGATTTTCCCGGATATGATCAAATACAGGGGCTTGAAAGAGTCAGATGTTGATAGTTTTGTGGATGATGTTATCGTGAATGGTAAAGCATGGGCATCTGGAGCTCAGGAGGTCTTGACTGGTTCTCATGTATTTGTGTGCGCCCATGGTAGTCGAGATCGTAGATGTGGTGTTTGTGGACCTGTTCTCATTGATAAATTCATAGAGGAAGCTGAATTGCGAGGAATGAAGGATAAGGTGTTTGTTAGTCCATGTTCTCACATTGGGGGCCACAAGTATGCTGGGAACTTGATTATCTACAGCCCTGGTGCAGATGGAATGATCACTGGTCACTGGTATGGCTATGTCGCTCCTGATGATGTACCAGAATTGCTTGATGAGCATATTGGGAAAGGGCAGATTATAGAACGACTGTGGAGAGGCCAAATGGGAGTATCTACTGAGGAAATTGAAAAGGCGAATGAACACAAGGTTCCAAATGGAGAAAGTGAAAAACTTAAGGATCAGAAGCTTCCAAATGGAGAGGATTCTAAGAAAAGCGAGGAAAAGCCGCAAGAGAACTTTGCTGGTTGTTGCCAGGGTGCTAATGGAGTCTCATGCTGCAGAGATGGAAGTTTGGAGCAGACCAGTGGAATCGAGGAAAAGAAGCAGAAAGAAACCACTGAGGCTACTAGTGGCAAAAAGGATGGATTGGCATGCAAACTGACAAGCTGCATTGGAAAATGGGAGCAAAGTGATATTCTTGCTGCTGTTGCGGTGGTGGGAGCTGTGGCAACTGTGGGTGTTGCAGTCTATAGCTTTCACAGAAGGTCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

409

Amino Acids

44.68

Weight (kDa)

5.94

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suc_Fer-like PF06999 66 - 277 3.8e-46 Sucrase/ferredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 295
AccI GTMKAC 1 cut(s) 210
AccII CGCG 3 cut(s) 6, 270, 378
AciI CCGC 5 cut(s) 52, 144, 293, 959, 1163
AclWI GGATC 2 cut(s) 284, 918
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 1 cut(s) 605
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 2 cut(s) 161, 771
AfiI CCNNNNNNNGG 4 cut(s) 112, 175, 258, 313
AflII CTTAAG 1 cut(s) 905
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 3 cut(s) 322, 445, 860
AhlI ACTAGT 1 cut(s) 1079
AjiI CACGTC 2 cut(s) 229, 406
AjnI CCWGG 4 cut(s) 257, 326, 712, 984
AloI GAACNNNNNNTCC 2 cut(s) 326, 358
AluBI AGCT 8 cut(s) 196, 358, 512, 620, 919, 1119, 1175, 1206
AluI AGCT 8 cut(s) 196, 358, 512, 620, 919, 1119, 1175, 1206
Alw21I GWGCWC 1 cut(s) 514
Alw26I GTCTC 1 cut(s) 1006
AlwI GGATC 2 cut(s) 284, 918
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 7 cut(s) 114, 173, 255, 260, 324, 676, 829
ApeKI GCWGC 3 cut(s) 1008, 1119, 1154
ApoI RAATTY 1 cut(s) 605
AspLEI GCGC 2 cut(s) 6, 551
AspS9I GGNCC 2 cut(s) 587, 676
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 3 cut(s) 5, 178, 413
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 587
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 2 cut(s) 251, 514
BbsI GAAGAC 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 514
BbvI GCAGC 3 cut(s) 995, 1106, 1141
BccI CCATC 4 cut(s) 197, 716, 1010, 1088
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 4 cut(s) 259, 328, 714, 986
BclI TGATCA 2 cut(s) 426, 729
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 1006
BcuI ACTAGT 1 cut(s) 1079
BfaI CTAG 2 cut(s) 107, 1080
BfmI CTRYAG 3 cut(s) 706, 1009, 1201
BfrI CTTAAG 1 cut(s) 905
BglI GCCNNNNNGGC 1 cut(s) 263
BisI GCNGC 4 cut(s) 959, 1009, 1120, 1155
BlsI GCNGC 4 cut(s) 960, 1010, 1121, 1156
Bme1390I CCNGG 5 cut(s) 259, 328, 419, 714, 986
Bme18I GGWCC 1 cut(s) 587
BmeT110I CYCGRG 1 cut(s) 251
BmgBI CACGTC 2 cut(s) 229, 406
BmgT120I GGNCC 2 cut(s) 587, 676
BmiI GGNNCC 4 cut(s) 205, 280, 677, 882
BmrFI CCNGG 5 cut(s) 259, 328, 419, 714, 986
BmsI GCATC 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 528
Bpu10I CCTNAGC 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 4 cut(s) 252, 553, 712, 985
BsaXI ACNNNNNCTCC 6 cut(s) 113, 116, 143, 146, 326, 356
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 175, 258, 313
Bse118I RCCGGY 2 cut(s) 200, 262
Bse1I ACTGG 4 cut(s) 532, 739, 746, 1035
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 4 cut(s) 259, 328, 714, 986
BseDI CCNNGG 4 cut(s) 252, 553, 712, 985
BseGI GGATG 2 cut(s) 478, 1099
BseLI CCNNNNNNNGG 4 cut(s) 112, 175, 258, 313
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 3 cut(s) 527, 840, 1062
BseNI ACTGG 4 cut(s) 532, 739, 746, 1035
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 995, 1106, 1141
BseYI CCCAGC 1 cut(s) 689
BsgI GTGCAG 1 cut(s) 738
Bsh1236I CGCG 3 cut(s) 6, 270, 378
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 7 cut(s) 116, 175, 257, 262, 326, 678, 831
BshNI GGYRCC 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 514
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 4 cut(s) 176, 201, 263, 419
BslI CCNNNNNNNGG 4 cut(s) 112, 175, 258, 313
BsmAI GTCTC 1 cut(s) 1006
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 7 cut(s) 116, 175, 257, 262, 326, 678, 831
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 251, 514
Bsp143I GATC 6 cut(s) 220, 289, 426, 565, 729, 910
Bsp19I CCATGG 1 cut(s) 553
BspACI CCGC 5 cut(s) 52, 144, 293, 959, 1163
BspANI GGCC 7 cut(s) 116, 175, 257, 262, 326, 678, 831
BspCNI CTCAG 3 cut(s) 526, 841, 1063
BspFNI CGCG 3 cut(s) 6, 270, 378
BspLI GGNNCC 4 cut(s) 205, 280, 677, 882
BspMAI CTGCAG 1 cut(s) 1013
BspPI GGATC 2 cut(s) 284, 918
BspT107I GGYRCC 1 cut(s) 203
BspTI CTTAAG 1 cut(s) 905
BsrBI CCGCTC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 117
BsrFI RCCGGY 2 cut(s) 200, 262
BsrI ACTGG 4 cut(s) 532, 739, 746, 1035
BssAI RCCGGY 2 cut(s) 200, 262
BssECI CCNNGG 4 cut(s) 252, 553, 712, 985
BssMI GATC 6 cut(s) 220, 289, 426, 565, 729, 910
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 4 cut(s) 259, 328, 714, 986
Bst4CI ACNGT 5 cut(s) 208, 364, 401, 822, 1186
Bst6I CTCTTC 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 213
BstAFI CTTAAG 1 cut(s) 905
BstC8I GCNNGC 5 cut(s) 198, 202, 264, 268, 1105
BstDEI CTNAG 4 cut(s) 513, 849, 939, 1071
BstDSI CCRYGG 1 cut(s) 553
BstF5I GGATG 2 cut(s) 478, 1099
BstFNI CGCG 3 cut(s) 6, 270, 378
BstHHI GCGC 2 cut(s) 6, 551
BstKTI GATC 6 cut(s) 223, 292, 429, 568, 732, 913
BstMAI GTCTC 1 cut(s) 1006
BstMBI GATC 6 cut(s) 220, 289, 426, 565, 729, 910
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 7 cut(s) 246, 263, 276, 323, 509, 787, 1160
BstNI CCWGG 4 cut(s) 259, 328, 714, 986
BstNSI RCATGY 1 cut(s) 1107
BstSCI CCNGG 5 cut(s) 257, 326, 417, 712, 984
BstSFI CTRYAG 3 cut(s) 706, 1009, 1201
BstUI CGCG 3 cut(s) 6, 270, 378
BstV1I GCAGC 3 cut(s) 995, 1106, 1141
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 7 cut(s) 116, 175, 257, 262, 326, 678, 831
BtgI CCRYGG 1 cut(s) 553
BtrI CACGTC 2 cut(s) 229, 406
BtsCI GGATG 2 cut(s) 478, 1099
BtsIMutI CAGTG 4 cut(s) 732, 739, 1042, 1068
Cac8I GCNNGC 5 cut(s) 198, 202, 264, 268, 1105
CfoI GCGC 2 cut(s) 6, 551
Cfr10I RCCGGY 2 cut(s) 200, 262
Cfr13I GGNCC 2 cut(s) 587, 676
CseI GACGC 3 cut(s) 221, 259, 384
Csp6I GTAC 2 cut(s) 160, 770
CviAII CATG 6 cut(s) 498, 536, 554, 660, 1005, 1104
CviQI GTAC 2 cut(s) 160, 770
DdeI CTNAG 4 cut(s) 513, 849, 939, 1071
DpnI GATC 6 cut(s) 222, 291, 428, 567, 731, 912
DpnII GATC 6 cut(s) 220, 289, 426, 565, 729, 910
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 512
Eco130I CCWWGG 1 cut(s) 553
Eco147I AGGCCT 1 cut(s) 257
Eco24I GRGCYC 2 cut(s) 251, 514
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 587
Eco53kI GAGCTC 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 512
EcoRII CCWGG 4 cut(s) 257, 326, 712, 984
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 553
EcoT38I GRGCYC 2 cut(s) 251, 514
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 6 cut(s) 501, 539, 557, 663, 1008, 1107
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 6 cut(s) 497, 535, 553, 659, 1004, 1103
FauI CCCGC 1 cut(s) 151
FbaI TGATCA 2 cut(s) 426, 729
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 4 cut(s) 959, 1009, 1120, 1155
FokI GGATG 2 cut(s) 485, 1106
FriOI GRGCYC 2 cut(s) 251, 514
Fsp4HI GCNGC 4 cut(s) 959, 1009, 1120, 1155
FspBI CTAG 2 cut(s) 107, 1080
GlaI GCGC 2 cut(s) 5, 550
GluI GCNGC 4 cut(s) 959, 1009, 1120, 1155
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 7 cut(s) 116, 175, 257, 262, 326, 678, 831
HapII CCGG 4 cut(s) 176, 201, 263, 419
HgaI GACGC 3 cut(s) 221, 259, 384
HhaI GCGC 2 cut(s) 6, 551
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 6 cut(s) 501, 539, 557, 663, 1008, 1107
Hin6I GCGC 2 cut(s) 4, 549
HinP1I GCGC 2 cut(s) 4, 549
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 5 cut(s) 284, 449, 935, 999, 1041
HpaII CCGG 4 cut(s) 176, 201, 263, 419
HphI GGTGA 3 cut(s) 5, 178, 413
Hpy166II GTNNAC 3 cut(s) 186, 211, 587
Hpy188I TCNGA 5 cut(s) 121, 283, 289, 454, 915
Hpy188III TCNNGA 8 cut(s) 169, 349, 484, 507, 515, 523, 563, 761
Hpy8I GTNNAC 3 cut(s) 186, 211, 587
Hpy99I CGWCG 7 cut(s) 125, 152, 155, 212, 215, 275, 316
HpyAV CCTTC 6 cut(s) 96, 269, 365, 374, 631, 1209
HpyCH4III ACNGT 5 cut(s) 208, 364, 401, 822, 1186
HpyCH4IV ACGT 2 cut(s) 228, 405
HpyCH4V TGCA 5 cut(s) 719, 1011, 1107, 1122, 1196
HpyF10VI GCNNNNNNNGC 7 cut(s) 246, 263, 276, 323, 509, 787, 1160
HpyF3I CTNAG 4 cut(s) 513, 849, 939, 1071
HpySE526I ACGT 2 cut(s) 228, 405
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 6 cut(s) 501, 539, 557, 663, 1008, 1107
HspAI GCGC 2 cut(s) 4, 549
KroI GCCGGC 2 cut(s) 200, 262
KroNI GCCGGC 2 cut(s) 202, 264
Ksp22I TGATCA 2 cut(s) 426, 729
Kzo9I GATC 6 cut(s) 220, 289, 426, 565, 729, 910
LmnI GCTCC 7 cut(s) 284, 300, 509, 763, 1027, 1135, 1172
Lsp1109I GCAGC 3 cut(s) 995, 1106, 1141
LweI GCATC 1 cut(s) 512
MaeI CTAG 2 cut(s) 107, 1080
MaeII ACGT 2 cut(s) 228, 405
MaeIII GTNAC 3 cut(s) 43, 401, 737
MalI GATC 6 cut(s) 222, 291, 428, 567, 731, 912
MbiI CCGCTC 1 cut(s) 295
MboI GATC 6 cut(s) 220, 289, 426, 565, 729, 910
MboII GAAGA 3 cut(s) 54, 223, 343
MhlI GDGCHC 2 cut(s) 251, 514
MluCI AATT 5 cut(s) 23, 605, 623, 776, 855
MlyI GAGTC 3 cut(s) 293, 458, 1008
MmeI TCCRAC 1 cut(s) 144
MroNI GCCGGC 2 cut(s) 200, 262
MseI TTAA 1 cut(s) 906
MslI CAYNNNNRTG 2 cut(s) 684, 744
MspCI CTTAAG 1 cut(s) 905
MspI CCGG 4 cut(s) 176, 201, 263, 419
MspR9I CCNGG 5 cut(s) 259, 328, 419, 714, 986
Mva1269I GAATGC 1 cut(s) 317
MvaI CCWGG 4 cut(s) 259, 328, 714, 986
MvnI CGCG 3 cut(s) 6, 270, 378
MwoI GCNNNNNNNGC 7 cut(s) 246, 263, 276, 323, 509, 787, 1160
NaeI GCCGGC 2 cut(s) 202, 264
NciI CCSGG 1 cut(s) 419
NcoI CCATGG 1 cut(s) 553
NdeII GATC 6 cut(s) 220, 289, 426, 565, 729, 910
NgoMIV GCCGGC 2 cut(s) 200, 262
NlaIII CATG 6 cut(s) 501, 539, 557, 663, 1008, 1107
NlaIV GGNNCC 4 cut(s) 205, 280, 677, 882
NmuCI GTSAC 2 cut(s) 401, 737
NspI RCATGY 1 cut(s) 1107
PaeI GCATGC 1 cut(s) 1107
PceI AGGCCT 1 cut(s) 257
PcsI WCGNNNNNNNCGW 5 cut(s) 204, 216, 225, 279, 342
PctI GAATGC 1 cut(s) 317
PdiI GCCGGC 2 cut(s) 202, 264
PfeI GAWTC 2 cut(s) 935, 1041
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 4 cut(s) 960, 1010, 1121, 1156
Ple19I CGATCG 1 cut(s) 223
PleI GAGTC 3 cut(s) 292, 457, 1007
PpsI GAGTC 3 cut(s) 292, 457, 1007
Psp124BI GAGCTC 1 cut(s) 514
Psp6I CCWGG 4 cut(s) 257, 326, 712, 984
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 4 cut(s) 257, 326, 712, 984
PspN4I GGNNCC 4 cut(s) 205, 280, 677, 882
PspPI GGNCC 2 cut(s) 587, 676
PstI CTGCAG 1 cut(s) 1013
PvuI CGATCG 1 cut(s) 223
RsaI GTAC 2 cut(s) 161, 771
RsaNI GTAC 2 cut(s) 160, 770
RseI CAYNNNNRTG 2 cut(s) 684, 744
SacI GAGCTC 1 cut(s) 514
SalI GTCGAC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 906
SatI GCNGC 4 cut(s) 959, 1009, 1120, 1155
Sau3AI GATC 6 cut(s) 220, 289, 426, 565, 729, 910
Sau96I GGNCC 2 cut(s) 587, 676
SchI GAGTC 3 cut(s) 293, 458, 1008
ScrFI CCNGG 5 cut(s) 259, 328, 419, 714, 986
SduI GDGCHC 2 cut(s) 251, 514
SfaNI GCATC 1 cut(s) 512
SfcI CTRYAG 3 cut(s) 706, 1009, 1201
SgrDI CGTCGACG 1 cut(s) 209
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 2 cut(s) 684, 744
SmlI CTYRAG 1 cut(s) 905
SmoI CTYRAG 1 cut(s) 905
SpeI ACTAGT 1 cut(s) 1079
SphI GCATGC 1 cut(s) 1107
Sse9I AATT 5 cut(s) 23, 605, 623, 776, 855
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 5 cut(s) 52, 144, 293, 959, 1163
SspMI CTAG 2 cut(s) 107, 1080
SstI GAGCTC 1 cut(s) 514
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 5 cut(s) 257, 326, 417, 712, 984
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 5 cut(s) 208, 364, 401, 822, 1186
TaiI ACGT 2 cut(s) 231, 408
TaqI TCGA 4 cut(s) 210, 273, 562, 1044
TasI AATT 5 cut(s) 23, 605, 623, 776, 855
TauI GCSGC 1 cut(s) 961
TfiI GAWTC 2 cut(s) 935, 1041
Tru1I TTAA 1 cut(s) 906
Tru9I TTAA 1 cut(s) 906
TscAI CASTG 4 cut(s) 739, 746, 1042, 1075
TseFI GTSAC 2 cut(s) 401, 737
TseI GCWGC 3 cut(s) 1008, 1119, 1154
Tsp45I GTSAC 2 cut(s) 401, 737
TspDTI ATGAA 3 cut(s) 598, 650, 885
TspGWI ACGGA 2 cut(s) 17, 334
TspRI CASTG 4 cut(s) 739, 746, 1042, 1075
Vha464I CTTAAG 1 cut(s) 905
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 1 cut(s) 605
XceI RCATGY 1 cut(s) 1107
XcmI CCANNNNNNNNNTGG 2 cut(s) 686, 992
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 2 cut(s) 107, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.