RchiOBHm_Chr6g0279861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001205
Physical Location & Seq
Reverse (-)
43061175 .. 43063679
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25096

Sequence Viewer

Length: 381 bp
ATGATAATTAAGGTCATATCTTCGCAACCTACCACTAGAGTTACATTTAATTACAAAAACTGCCACCACAGCCCTCTCTCCCTCTCTCCCTCTTCCTCAAGCGTGTACCTTGTCAACTGCGCCTCTGAGGCCGTCGCCTTCTGCTGCTCCGCTGACAACTTGGTCCTCTGCCAATCGAGGGCCTCTGAGGCCGTCGCCTTCTGCTGCTCCGCTGACAACTCGATCACACCCCAATCGAGGGCTTCTCCGGCTGCCCCTTCTCATACAATTCATCCAGATCTCGGAGATTCATTCCGGTTTCCGATGGCTCAGCCTCACGTAAACAAAGACGACAATCGTGACGATGAAGGCTTGATGTTTATATTCTTGATTGTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.65

Weight (kDa)

5.86

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AciI CCGC 2 cut(s) 150, 210
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 4 cut(s) 178, 237, 238, 281
AoxI GGCC 3 cut(s) 129, 180, 189
ApeKI GCWGC 3 cut(s) 144, 204, 251
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 163, 180
AvaII GGWCC 1 cut(s) 163
BbvI GCAGC 3 cut(s) 131, 191, 238
BccI CCATC 1 cut(s) 298
BceAI ACGGC 2 cut(s) 116, 176
BfaI CTAG 1 cut(s) 36
BglI GCCNNNNNGGC 2 cut(s) 128, 188
BglII AGATCT 1 cut(s) 277
BisI GCNGC 3 cut(s) 145, 205, 252
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 3 cut(s) 146, 206, 253
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 180
BplI GAGNNNNNCTC 2 cut(s) 229, 261
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 319
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 237, 238, 281
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 4 cut(s) 178, 237, 238, 281
BseMII CTCAG 3 cut(s) 117, 177, 323
BseXI GCAGC 3 cut(s) 131, 191, 238
BshFI GGCC 3 cut(s) 131, 182, 191
BsiSI CCGG 2 cut(s) 248, 295
BslI CCNNNNNNNGG 4 cut(s) 178, 237, 238, 281
BsnI GGCC 3 cut(s) 131, 182, 191
Bsp143I GATC 2 cut(s) 222, 277
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 2 cut(s) 150, 210
BspANI GGCC 3 cut(s) 131, 182, 191
BspCNI CTCAG 3 cut(s) 118, 178, 322
BssMI GATC 2 cut(s) 222, 277
Bst6I CTCTTC 1 cut(s) 97
BstBAI YACGTR 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 126, 186, 309
BstF5I GGATG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 225, 280
BstMBI GATC 2 cut(s) 222, 277
BstMWI GCNNNNNNNGC 4 cut(s) 69, 128, 188, 248
BstV1I GCAGC 3 cut(s) 131, 191, 238
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 3 cut(s) 131, 182, 191
BtsCI GGATG 1 cut(s) 271
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 163, 180
Csp6I GTAC 1 cut(s) 106
CviJI RGCY 9 cut(s) 72, 131, 182, 191, 242, 251, 308, 313, 351
CviKI_1 RGCY 9 cut(s) 72, 131, 182, 191, 242, 251, 308, 313, 351
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 3 cut(s) 126, 186, 309
DpnI GATC 2 cut(s) 224, 279
DpnII GATC 2 cut(s) 222, 277
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 180
FaiI YATR 3 cut(s) 17, 264, 362
Fnu4HI GCNGC 3 cut(s) 145, 205, 252
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 145, 205, 252
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 121
GluI GCNGC 3 cut(s) 145, 205, 252
HaeIII GGCC 3 cut(s) 131, 182, 191
HapII CCGG 2 cut(s) 248, 295
HhaI GCGC 1 cut(s) 122
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 287
HpaII CCGG 2 cut(s) 248, 295
Hpy166II GTNNAC 3 cut(s) 106, 115, 322
Hpy188I TCNGA 4 cut(s) 127, 187, 284, 303
Hpy188III TCNNGA 3 cut(s) 275, 338, 367
Hpy8I GTNNAC 3 cut(s) 106, 115, 322
Hpy99I CGWCG 2 cut(s) 137, 197
HpyAV CCTTC 4 cut(s) 148, 208, 267, 341
HpyCH4IV ACGT 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 4 cut(s) 69, 128, 188, 248
HpyF3I CTNAG 3 cut(s) 126, 186, 309
HpySE526I ACGT 1 cut(s) 318
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 222, 277
LmnI GCTCC 2 cut(s) 152, 212
LpnPI CCDG 3 cut(s) 261, 288, 308
Lsp1109I GCAGC 3 cut(s) 131, 191, 238
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 40, 338
MalI GATC 2 cut(s) 224, 279
MboI GATC 2 cut(s) 222, 277
MboII GAAGA 2 cut(s) 12, 84
MflI RGATCY 1 cut(s) 277
MluCI AATT 3 cut(s) 6, 49, 267
MseI TTAA 2 cut(s) 9, 48
MspA1I CMGCKG 2 cut(s) 152, 212
MspI CCGG 2 cut(s) 248, 295
MwoI GCNNNNNNNGC 4 cut(s) 69, 128, 188, 248
NdeII GATC 2 cut(s) 222, 277
NmuCI GTSAC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 3 cut(s) 146, 206, 253
Ppu21I YACGTR 1 cut(s) 319
PspPI GGNCC 2 cut(s) 163, 180
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 2 cut(s) 9, 48
SatI GCNGC 3 cut(s) 145, 205, 252
Sau3AI GATC 2 cut(s) 222, 277
Sau96I GGNCC 2 cut(s) 163, 180
SetI ASST 4 cut(s) 15, 31, 111, 321
SfiI GGCCNNNNNGGCC 1 cut(s) 188
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 3 cut(s) 6, 49, 267
SsiI CCGC 2 cut(s) 150, 210
SspMI CTAG 1 cut(s) 36
TaiI ACGT 1 cut(s) 321
TaqI TCGA 3 cut(s) 176, 221, 236
TasI AATT 3 cut(s) 6, 49, 267
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 9, 48
Tru9I TTAA 2 cut(s) 9, 48
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 3 cut(s) 144, 204, 251
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 260, 279, 360
VpaK11BI GGWCC 1 cut(s) 163
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.