RLG00000022162

Altered inheritance of mitochondria protein 32-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001205
Physical Location & Seq
Forward (+)
81461026 .. 81463947
2922 bp
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UTR
Exon/CDS
Intron
RLM00000022162

Sequence Viewer

Length: 675 bp
ATGGCCTCCGACGACCTCTCCACCGTGTCCGCCGCCGCAGATGACGAGAAGTACGGGTTCAAGAGGCCGGAGATTCCCTGCTCTCACATTGGGGGCCACAAGTATGCTGGGAACTTGATTATCTACAGCCCTGGTGCAGATGGAAAGATCACTGGTCACTGGTATGGCTATGTTGCTCCTGATGATGTACCGGAATTGCTTGATGAGCATATTGGGAAAGGGAAGATTATAGAACGATTATGGAGAGGCGAAATGGGAGTATCCGCTGAGGAAGCTGACAAGGCTAATGAACACAAGCTTCCAAATGGAGAAAGTGAAAAATTTAAGGACCAGAAACTTCCAATTGGAGAAGGTTCTAAGAAAAGCAAGGAAAATCCCCAAGAAAATGGCACTCAGATTCAGAACAGCAATGAGAACTTTGCAGGTTGTTGCCAGGGTGCTAATGGAGTCTCATGCTGCAGAGATGGAAGTTTGGAGCAGAACAGTGGAATTGAGGAAAAGAAGCAGAAAGAAACTACAGAAGCTAGCAGTGGCAAGAAGGATGCATTGGGATGCAAACTGACAAGCTACATGGGAAAGTGGGAGCAAAGTGATATCCTTGCAGCTGTCGCTGTGGTGGGAGCAGTGGCAACCGTTGGTGTGGCGGTCTATAGCTTTTACAGAAGGTCAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

225

Amino Acids

24.06

Weight (kDa)

5.35

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suc_Fer-like PF06999 27 - 83 1.2e-18 Sucrase/ferredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 413
AciI CCGC 5 cut(s) 30, 33, 36, 264, 644
AcsI RAATTY 1 cut(s) 320
AfaI GTAC 2 cut(s) 53, 189
AgsI TTSAA 1 cut(s) 61
AjnI CCWGG 2 cut(s) 130, 432
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 6 cut(s) 275, 298, 524, 567, 605, 654
AluI AGCT 6 cut(s) 275, 298, 524, 567, 605, 654
Alw26I GTCTC 1 cut(s) 454
AoxI GGCC 3 cut(s) 3, 65, 94
ApeKI GCWGC 2 cut(s) 456, 602
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 94, 328
AsuNHI GCTAGC 1 cut(s) 524
AvaII GGWCC 1 cut(s) 328
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 443, 614
BccI CCATC 2 cut(s) 134, 458
BciT130I CCWGG 2 cut(s) 132, 434
BciVI GTATCC 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 4 cut(s) 124, 457, 516, 649
BfuAI ACCTGC 1 cut(s) 413
BfuI GTATCC 1 cut(s) 271
BisI GCNGC 4 cut(s) 33, 36, 457, 603
BlsI GCNGC 4 cut(s) 34, 37, 458, 604
Bme1390I CCNGG 2 cut(s) 132, 434
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 94, 328
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 132, 434
BmsI GCATC 2 cut(s) 532, 542
BmtI GCTAGC 1 cut(s) 528
Bpu10I CCTNAGC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 130, 433
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 157, 164
Bse3DI GCAATG 1 cut(s) 415
BseBI CCWGG 2 cut(s) 132, 434
BseDI CCNNGG 2 cut(s) 130, 433
BseGI GGATG 2 cut(s) 547, 557
BseMI GCAATG 1 cut(s) 415
BseMII CTCAG 2 cut(s) 258, 407
BseNI ACTGG 2 cut(s) 157, 164
BseXI GCAGC 2 cut(s) 443, 614
BseYI CCCAGC 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 156
BshFI GGCC 3 cut(s) 5, 67, 96
BsiSI CCGG 2 cut(s) 68, 191
BsmAI GTCTC 1 cut(s) 454
BsnI GGCC 3 cut(s) 5, 67, 96
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 5 cut(s) 30, 33, 36, 264, 644
BspANI GGCC 3 cut(s) 5, 67, 96
BspCNI CTCAG 2 cut(s) 259, 406
BspLI GGNNCC 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 461
BspMI ACCTGC 1 cut(s) 413
BspOI GCTAGC 1 cut(s) 528
BsrDI GCAATG 1 cut(s) 415
BsrI ACTGG 2 cut(s) 157, 164
BssECI CCNNGG 2 cut(s) 130, 433
BssMI GATC 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 132, 434
Bst4CI ACNGT 3 cut(s) 25, 485, 634
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 3 cut(s) 267, 357, 393
BstF5I GGATG 2 cut(s) 547, 557
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 205, 272, 281, 608
BstNI CCWGG 2 cut(s) 132, 434
BstSCI CCNGG 2 cut(s) 130, 432
BstSFI CTRYAG 4 cut(s) 124, 457, 516, 649
BstV1I GCAGC 2 cut(s) 443, 614
BstXI CCANNNNNNTGG 1 cut(s) 386
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 3 cut(s) 5, 67, 96
BtsCI GGATG 2 cut(s) 547, 557
BtsI GCAGTG 2 cut(s) 535, 630
BtsIMutI CAGTG 5 cut(s) 150, 157, 490, 535, 630
BveI ACCTGC 1 cut(s) 413
Cac8I GCNNGC 1 cut(s) 526
Cfr13I GGNCC 2 cut(s) 94, 328
Csp6I GTAC 2 cut(s) 52, 188
CviAII CATG 2 cut(s) 453, 571
CviQI GTAC 2 cut(s) 52, 188
DdeI CTNAG 3 cut(s) 267, 357, 393
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 19
Eco32I GATATC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 130, 432
EcoRV GATATC 1 cut(s) 595
EcoT22I ATGCAT 1 cut(s) 547
FaeI CATG 2 cut(s) 456, 574
FaiI YATR 9 cut(s) 105, 165, 171, 210, 230, 241, 454, 572, 651
FatI CATG 2 cut(s) 452, 570
Fnu4HI GCNGC 4 cut(s) 33, 36, 457, 603
FokI GGATG 2 cut(s) 554, 564
Fsp4HI GCNGC 4 cut(s) 33, 36, 457, 603
FspBI CTAG 1 cut(s) 525
GluI GCNGC 4 cut(s) 33, 36, 457, 603
GsaI CCCAGC 1 cut(s) 111
HaeIII GGCC 3 cut(s) 5, 67, 96
HapII CCGG 2 cut(s) 68, 191
Hin1II CATG 2 cut(s) 456, 574
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 3 cut(s) 73, 397, 447
HpaII CCGG 2 cut(s) 68, 191
Hpy188I TCNGA 3 cut(s) 10, 396, 402
Hpy188III TCNNGA 2 cut(s) 61, 179
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 3 cut(s) 344, 532, 657
HpyCH4III ACNGT 3 cut(s) 25, 485, 634
HpyCH4V TGCA 6 cut(s) 137, 422, 459, 545, 555, 602
HpyF10VI GCNNNNNNNGC 4 cut(s) 205, 272, 281, 608
HpyF3I CTNAG 3 cut(s) 267, 357, 393
Hsp92II CATG 2 cut(s) 456, 574
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 4 cut(s) 181, 475, 583, 620
Lsp1109I GCAGC 2 cut(s) 443, 614
LweI GCATC 2 cut(s) 532, 542
MaeI CTAG 1 cut(s) 525
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 235
MfeI CAATTG 1 cut(s) 342
MluCI AATT 4 cut(s) 194, 320, 342, 489
MlyI GAGTC 1 cut(s) 456
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 6 cut(s) 16, 26, 57, 239, 262, 487
Mph1103I ATGCAT 1 cut(s) 547
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 3 cut(s) 102, 162, 550
MspA1I CMGCKG 2 cut(s) 266, 605
MspI CCGG 2 cut(s) 68, 191
MspR9I CCNGG 2 cut(s) 132, 434
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 2 cut(s) 132, 434
MwoI GCNNNNNNNGC 4 cut(s) 205, 272, 281, 608
NdeII GATC 1 cut(s) 147
NheI GCTAGC 1 cut(s) 524
NlaIII CATG 2 cut(s) 456, 574
NlaIV GGNNCC 1 cut(s) 95
NmuCI GTSAC 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 547
PfeI GAWTC 2 cut(s) 73, 397
PkrI GCNGC 4 cut(s) 34, 37, 458, 604
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
Psp6I CCWGG 2 cut(s) 130, 432
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 2 cut(s) 130, 432
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 2 cut(s) 94, 328
PstI CTGCAG 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 2 cut(s) 53, 189
RsaNI GTAC 2 cut(s) 52, 188
RseI CAYNNNNRTG 3 cut(s) 102, 162, 550
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 4 cut(s) 33, 36, 457, 603
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 2 cut(s) 94, 328
SchI GAGTC 1 cut(s) 456
ScrFI CCNGG 2 cut(s) 132, 434
SfaNI GCATC 2 cut(s) 532, 542
SfcI CTRYAG 4 cut(s) 124, 457, 516, 649
SinI GGWCC 1 cut(s) 328
SmiMI CAYNNNNRTG 3 cut(s) 102, 162, 550
Sse9I AATT 4 cut(s) 194, 320, 342, 489
SsiI CCGC 5 cut(s) 30, 33, 36, 264, 644
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 2 cut(s) 130, 432
TaaI ACNGT 3 cut(s) 25, 485, 634
TasI AATT 4 cut(s) 194, 320, 342, 489
TauI GCSGC 2 cut(s) 35, 38
TfiI GAWTC 2 cut(s) 73, 397
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 5 cut(s) 157, 164, 490, 535, 630
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 2 cut(s) 456, 602
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 5 cut(s) 157, 164, 490, 535, 630
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 2 cut(s) 104, 440
XspI CTAG 1 cut(s) 525
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.