Rmu_sc0000248.1_g000001

Altered inheritance of mitochondria protein 32-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000248.1
OG0001205
Physical Location & Seq
Forward (+)
1370 .. 4495
3126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000248.1_g000001.1.cds

Sequence Viewer

Length: 1247 bp
atgcgcattgcgaacccacactcatttcgtttcctcacaaccgtaacgaaccgctacctctttctctcctgctcctccgtttctctctctaaacctcgctcaccgactctgctaccccaaaccctagcaatggcctccgacgacctctccaccctgccctccgccgccgatgacgagaagtacgggttcaagaggccggagatgttccagagcaagctcgccggcaccgtcgacgcctacgaccgccacgtgttcctctgctacaagagccccgaggcctggcccgcccgcgttgaaggctccgagtccgatccgctccccaagctcctctcctcggctttcaaggcccgcaagaacgatatctcgatcaagactaagctgacggtgtgcgaagggcgcgacggaactgaattcgctgacggcgatgtgttgattttcccggatatgatcaaataccggggcttgaaagagtcagatgttgatagctttgtggatgatgttatcgtgaatgataaagcatgggcgtctggagcacgggaggtcttgactggttctcacgtttttgtgtgtgcccatggtagtcgagatcgtagatgtggtgtttgtggacctgttctcattgataaattcatagaggaggctgaattgcgaggactgaaggatcaggtgtttgttagtccctgttctcacattgggggccacaagtatgctgggaacttgattatctacagccctggtgcagatggaaagatcactggtcactggtatggctatgttgctcctgatgatgtaccggaattgcttgatgagcatattgggaaagggaagattatagaacgattatggagaggcgaaatgggagtatctgctgaggaagctgaaaaggttaatgaacacaagcttccaaatggagaaagtgaaaaatttaaggaccagaagcttccaattggagaaggttctaagaaaagcaaggaaaatccccaagaaaacggcactcagattcagaacagcaatgataactttgcaggttgttgccagggtgctaatggagtctcatgctgcagagatggaaatttggagcagaacagtggaatcgaggaaaagaagcagaaagaaactacagaagctagcagtggcaagaaggatgcagtgggatgcaaactgacaagctacatgggaaagtgggagcaaagtgatatccttgcagctgtcgcggtggtgggagcagtggcaactgtgggtgtggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

416

Amino Acids

45.34

Weight (kDa)

5.71

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 1016
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 316
AccI GTMKAC 1 cut(s) 231
AccII CGCG 3 cut(s) 291, 399, 1214
AciI CCGC 9 cut(s) 52, 162, 165, 244, 285, 289, 314, 349, 1214
AclWI GGATC 2 cut(s) 305, 669
AcsI RAATTY 4 cut(s) 410, 626, 923, 1072
AcuI CTGAAG 1 cut(s) 677
AcvI CACGTG 1 cut(s) 250
AcyI GRCGYC 2 cut(s) 234, 524
AfaI GTAC 2 cut(s) 182, 792
AfiI CCNNNNNNNGG 3 cut(s) 130, 279, 334
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 4 cut(s) 190, 296, 343, 466
AjnI CCWGG 3 cut(s) 278, 733, 1035
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 1057
AlwI GGATC 2 cut(s) 305, 669
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 6 cut(s) 132, 194, 276, 281, 345, 697
ApeKI GCWGC 2 cut(s) 1059, 1205
ApoI RAATTY 4 cut(s) 410, 626, 923, 1072
AspLEI GCGC 2 cut(s) 6, 399
AspS9I GGNCC 5 cut(s) 282, 346, 608, 697, 931
AsuC2I CCSGG 2 cut(s) 440, 458
AsuHPI GGTGA 1 cut(s) 93
AsuNHI GCTAGC 1 cut(s) 1127
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 2 cut(s) 608, 931
BaeGI GKGCMC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 272
BbrPI CACGTG 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 535
BbvCI CCTCAGC 1 cut(s) 870
BbvI GCAGC 2 cut(s) 1046, 1217
BccI CCATC 2 cut(s) 737, 1061
BceAI ACGGC 2 cut(s) 436, 1006
BciT130I CCWGG 3 cut(s) 280, 735, 1037
BclI TGATCA 1 cut(s) 447
BcnI CCSGG 2 cut(s) 440, 458
BcoDI GTCTC 1 cut(s) 1057
BfaI CTAG 2 cut(s) 125, 1128
BfmI CTRYAG 3 cut(s) 727, 1060, 1119
BfuAI ACCTGC 1 cut(s) 1016
BisI GCNGC 3 cut(s) 165, 1060, 1206
BlsI GCNGC 3 cut(s) 166, 1061, 1207
Bme1390I CCNGG 5 cut(s) 280, 440, 458, 735, 1037
Bme18I GGWCC 2 cut(s) 608, 931
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 5 cut(s) 282, 346, 608, 697, 931
BmiI GGNNCC 3 cut(s) 226, 301, 698
BmrFI CCNGG 5 cut(s) 280, 440, 458, 735, 1037
BmsI GCATC 2 cut(s) 1135, 1145
BmtI GCTAGC 1 cut(s) 1131
BpmI CTGGAG 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 870
BpuMI CCSGG 2 cut(s) 440, 458
BsaAI YACGTR 1 cut(s) 250
BsaHI GRCGYC 2 cut(s) 234, 524
BsaJI CCNNGG 6 cut(s) 273, 333, 457, 574, 733, 1036
BsaWI WCCGGW 1 cut(s) 793
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 279, 334
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 3 cut(s) 553, 760, 767
Bse3DI GCAATG 3 cut(s) 6, 135, 1018
BseBI CCWGG 3 cut(s) 280, 735, 1037
BseDI CCNNGG 6 cut(s) 273, 333, 457, 574, 733, 1036
BseGI GGATG 3 cut(s) 499, 1150, 1160
BseLI CCNNNNNNNGG 3 cut(s) 130, 279, 334
BseMI GCAATG 3 cut(s) 6, 135, 1018
BseMII CTCAG 2 cut(s) 861, 1010
BseNI ACTGG 3 cut(s) 553, 760, 767
BseRI GAGGAG 4 cut(s) 64, 317, 322, 650
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 2 cut(s) 1046, 1217
BseYI CCCAGC 1 cut(s) 710
BsgI GTGCAG 1 cut(s) 759
Bsh1236I CGCG 3 cut(s) 291, 399, 1214
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 6 cut(s) 134, 196, 278, 283, 347, 699
BshNI GGYRCC 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 5 cut(s) 197, 222, 440, 457, 794
BslFI GGGAC 1 cut(s) 663
BslI CCNNNNNNNGG 3 cut(s) 130, 279, 334
BsmAI GTCTC 1 cut(s) 1057
BsmFI GGGAC 1 cut(s) 663
BsnI GGCC 6 cut(s) 134, 196, 278, 283, 347, 699
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 3 cut(s) 272, 535, 574
Bsp143I GATC 6 cut(s) 310, 366, 447, 586, 661, 750
Bsp19I CCATGG 1 cut(s) 574
BspACI CCGC 9 cut(s) 52, 162, 165, 244, 285, 289, 314, 349, 1214
BspANI GGCC 6 cut(s) 134, 196, 278, 283, 347, 699
BspCNI CTCAG 2 cut(s) 862, 1009
BspFNI CGCG 3 cut(s) 291, 399, 1214
BspLI GGNNCC 3 cut(s) 226, 301, 698
BspMAI CTGCAG 1 cut(s) 1064
BspMI ACCTGC 1 cut(s) 1016
BspOI GCTAGC 1 cut(s) 1131
BspPI GGATC 2 cut(s) 305, 669
BspT107I GGYRCC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 316
BsrDI GCAATG 3 cut(s) 6, 135, 1018
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 3 cut(s) 553, 760, 767
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 6 cut(s) 273, 333, 457, 574, 733, 1036
BssMI GATC 6 cut(s) 310, 366, 447, 586, 661, 750
BssNI GRCGYC 2 cut(s) 234, 524
BssT1I CCWWGG 1 cut(s) 574
Bst2UI CCWGG 3 cut(s) 280, 735, 1037
Bst4CI ACNGT 5 cut(s) 43, 229, 385, 1088, 1237
BstACI GRCGYC 2 cut(s) 234, 524
BstBAI YACGTR 1 cut(s) 250
BstC8I GCNNGC 7 cut(s) 215, 219, 223, 285, 289, 349, 1129
BstDEI CTNAG 4 cut(s) 375, 870, 960, 996
BstDSI CCRYGG 1 cut(s) 574
BstF5I GGATG 3 cut(s) 499, 1150, 1160
BstFNI CGCG 3 cut(s) 291, 399, 1214
BstHHI GCGC 2 cut(s) 6, 399
BstKTI GATC 6 cut(s) 313, 369, 450, 589, 664, 753
BstMAI GTCTC 1 cut(s) 1057
BstMBI GATC 6 cut(s) 310, 366, 447, 586, 661, 750
BstMCI CGRYCG 1 cut(s) 244
BstNI CCWGG 3 cut(s) 280, 735, 1037
BstSCI CCNGG 5 cut(s) 278, 438, 456, 733, 1035
BstSFI CTRYAG 3 cut(s) 727, 1060, 1119
BstSLI GKGCMC 1 cut(s) 574
BstUI CGCG 3 cut(s) 291, 399, 1214
BstV1I GCAGC 2 cut(s) 1046, 1217
BsuRI GGCC 6 cut(s) 134, 196, 278, 283, 347, 699
BtgI CCRYGG 1 cut(s) 574
BtgZI GCGATG 1 cut(s) 438
BtsCI GGATG 3 cut(s) 499, 1150, 1160
BtsI GCAGTG 3 cut(s) 1138, 1155, 1233
BtsIMutI CAGTG 6 cut(s) 753, 760, 1093, 1138, 1155, 1233
BveI ACCTGC 1 cut(s) 1016
Cac8I GCNNGC 7 cut(s) 215, 219, 223, 285, 289, 349, 1129
CfoI GCGC 2 cut(s) 6, 399
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 5 cut(s) 282, 346, 608, 697, 931
CseI GACGC 2 cut(s) 242, 513
Csp6I GTAC 2 cut(s) 181, 791
CviAII CATG 4 cut(s) 519, 575, 1056, 1174
CviQI GTAC 2 cut(s) 181, 791
DdeI CTNAG 4 cut(s) 375, 870, 960, 996
DpnI GATC 6 cut(s) 312, 368, 449, 588, 663, 752
DpnII GATC 6 cut(s) 310, 366, 447, 586, 661, 750
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 574
Eco147I AGGCCT 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 272
Eco32I GATATC 2 cut(s) 361, 1198
Eco47I GGWCC 2 cut(s) 608, 931
Eco57I CTGAAG 1 cut(s) 677
Eco72I CACGTG 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 3 cut(s) 278, 733, 1035
EcoRV GATATC 2 cut(s) 361, 1198
EcoT14I CCWWGG 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 574
FaeI CATG 4 cut(s) 522, 578, 1059, 1177
FaqI GGGAC 1 cut(s) 663
FatI CATG 4 cut(s) 518, 574, 1055, 1173
FauI CCCGC 3 cut(s) 292, 296, 356
FbaI TGATCA 1 cut(s) 447
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 165, 1060, 1206
FokI GGATG 3 cut(s) 506, 1157, 1167
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 165, 1060, 1206
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 125, 1128
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 398
GluI GCNGC 3 cut(s) 165, 1060, 1206
GsaI CCCAGC 1 cut(s) 714
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 6 cut(s) 134, 196, 278, 283, 347, 699
HapII CCGG 5 cut(s) 197, 222, 440, 457, 794
HgaI GACGC 2 cut(s) 242, 513
HhaI GCGC 2 cut(s) 6, 399
Hin1I GRCGYC 2 cut(s) 234, 524
Hin1II CATG 4 cut(s) 522, 578, 1059, 1177
Hin6I GCGC 2 cut(s) 4, 397
HinP1I GCGC 2 cut(s) 4, 397
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 2 cut(s) 899, 938
HinfI GANTC 6 cut(s) 106, 305, 470, 1000, 1050, 1092
HpaII CCGG 5 cut(s) 197, 222, 440, 457, 794
HphI GGTGA 1 cut(s) 93
Hpy166II GTNNAC 2 cut(s) 232, 608
Hpy188I TCNGA 6 cut(s) 139, 304, 310, 475, 999, 1005
Hpy188III TCNNGA 9 cut(s) 190, 208, 364, 370, 505, 528, 544, 584, 782
Hpy8I GTNNAC 2 cut(s) 232, 608
Hpy99I CGWCG 4 cut(s) 143, 233, 236, 404
HpyAV CCTTC 5 cut(s) 290, 386, 652, 947, 1135
HpyCH4III ACNGT 5 cut(s) 43, 229, 385, 1088, 1237
HpyCH4IV ACGT 2 cut(s) 249, 558
HpyCH4V TGCA 6 cut(s) 740, 1025, 1062, 1148, 1158, 1205
HpyF3I CTNAG 4 cut(s) 375, 870, 960, 996
HpySE526I ACGT 2 cut(s) 249, 558
Hsp92I GRCGYC 2 cut(s) 234, 524
Hsp92II CATG 4 cut(s) 522, 578, 1059, 1177
HspAI GCGC 2 cut(s) 4, 397
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 6 cut(s) 310, 366, 447, 586, 661, 750
LmnI GCTCC 9 cut(s) 77, 305, 321, 330, 530, 784, 1078, 1186, 1223
Lsp1109I GCAGC 2 cut(s) 1046, 1217
LweI GCATC 2 cut(s) 1135, 1145
MaeI CTAG 2 cut(s) 125, 1128
MaeII ACGT 2 cut(s) 249, 558
MaeIII GTNAC 2 cut(s) 43, 758
MalI GATC 6 cut(s) 312, 368, 449, 588, 663, 752
MbiI CCGCTC 1 cut(s) 316
MboI GATC 6 cut(s) 310, 366, 447, 586, 661, 750
MboII GAAGA 1 cut(s) 838
MfeI CAATTG 1 cut(s) 945
MhlI GDGCHC 3 cut(s) 272, 535, 574
MluCI AATT 7 cut(s) 410, 626, 644, 797, 923, 945, 1072
MlyI GAGTC 4 cut(s) 100, 314, 479, 1059
MmeI TCCRAC 1 cut(s) 162
MroNI GCCGGC 1 cut(s) 221
MseI TTAA 2 cut(s) 888, 927
MslI CAYNNNNRTG 2 cut(s) 705, 765
MspA1I CMGCKG 1 cut(s) 1208
MspI CCGG 5 cut(s) 197, 222, 440, 457, 794
MspR9I CCNGG 5 cut(s) 280, 440, 458, 735, 1037
MunI CAATTG 1 cut(s) 945
MvaI CCWGG 3 cut(s) 280, 735, 1037
MvnI CGCG 3 cut(s) 291, 399, 1214
NaeI GCCGGC 1 cut(s) 223
NciI CCSGG 2 cut(s) 440, 458
NcoI CCATGG 1 cut(s) 574
NdeII GATC 6 cut(s) 310, 366, 447, 586, 661, 750
NgoMIV GCCGGC 1 cut(s) 221
NheI GCTAGC 1 cut(s) 1127
NlaIII CATG 4 cut(s) 522, 578, 1059, 1177
NlaIV GGNNCC 3 cut(s) 226, 301, 698
NmeAIII GCCGAG 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 758
NsbI TGCGCA 1 cut(s) 5
PceI AGGCCT 1 cut(s) 278
PcsI WCGNNNNNNNCGW 4 cut(s) 225, 237, 246, 420
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 1000, 1092
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 3 cut(s) 166, 1061, 1207
PleI GAGTC 4 cut(s) 100, 313, 478, 1058
PmaCI CACGTG 1 cut(s) 250
PmlI CACGTG 1 cut(s) 250
PpsI GAGTC 4 cut(s) 100, 313, 478, 1058
Ppu21I YACGTR 1 cut(s) 250
Psp6I CCWGG 3 cut(s) 278, 733, 1035
PspCI CACGTG 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 3 cut(s) 278, 733, 1035
PspN4I GGNNCC 3 cut(s) 226, 301, 698
PspPI GGNCC 5 cut(s) 282, 346, 608, 697, 931
PstI CTGCAG 1 cut(s) 1064
PvuII CAGCTG 1 cut(s) 1208
RsaI GTAC 2 cut(s) 182, 792
RsaNI GTAC 2 cut(s) 181, 791
RseI CAYNNNNRTG 2 cut(s) 705, 765
SalI GTCGAC 1 cut(s) 230
SaqAI TTAA 2 cut(s) 888, 927
SatI GCNGC 3 cut(s) 165, 1060, 1206
Sau3AI GATC 6 cut(s) 310, 366, 447, 586, 661, 750
Sau96I GGNCC 5 cut(s) 282, 346, 608, 697, 931
SchI GAGTC 4 cut(s) 100, 314, 479, 1059
ScrFI CCNGG 5 cut(s) 280, 440, 458, 735, 1037
SduI GDGCHC 3 cut(s) 272, 535, 574
SfaNI GCATC 2 cut(s) 1135, 1145
SfcI CTRYAG 3 cut(s) 727, 1060, 1119
SgrDI CGTCGACG 1 cut(s) 230
SinI GGWCC 2 cut(s) 608, 931
SmiMI CAYNNNNRTG 2 cut(s) 705, 765
Sse9I AATT 7 cut(s) 410, 626, 644, 797, 923, 945, 1072
SseBI AGGCCT 1 cut(s) 278
SsiI CCGC 9 cut(s) 52, 162, 165, 244, 285, 289, 314, 349, 1214
SspMI CTAG 2 cut(s) 125, 1128
StuI AGGCCT 1 cut(s) 278
StyD4I CCNGG 5 cut(s) 278, 438, 456, 733, 1035
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 5 cut(s) 43, 229, 385, 1088, 1237
TaiI ACGT 2 cut(s) 252, 561
TaqI TCGA 4 cut(s) 231, 365, 583, 1095
TasI AATT 7 cut(s) 410, 626, 644, 797, 923, 945, 1072
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 2 cut(s) 1000, 1092
Tru1I TTAA 2 cut(s) 888, 927
Tru9I TTAA 2 cut(s) 888, 927
TscAI CASTG 6 cut(s) 760, 767, 1093, 1138, 1155, 1233
TseFI GTSAC 1 cut(s) 758
TseI GCWGC 2 cut(s) 1059, 1205
Tsp45I GTSAC 1 cut(s) 758
TspDTI ATGAA 2 cut(s) 619, 906
TspGWI ACGGA 2 cut(s) 67, 417
TspRI CASTG 6 cut(s) 760, 767, 1093, 1138, 1155, 1233
VpaK11BI GGWCC 2 cut(s) 608, 931
XapI RAATTY 4 cut(s) 410, 626, 923, 1072
XcmI CCANNNNNNNNNTGG 2 cut(s) 707, 1043
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 2 cut(s) 125, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.