Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002070.1

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Forward (+)

262863 .. 263997

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002070.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgatcaaataccggggcttgaaagagtcagatgttgatagctttgtggatgatgttatcgtgaatgataaaccatgggcatcaggagcacaggaggtcttaactggttctcacatttttgtgtgtgcccatggtagtcgagatcgtagatgtggtgtttgtggacctggtctcattgataaattcacagaggaggctgaattgcgaggactgaaggatcaggtgtttgttagtccttgttctgacattgggggccacaagtatgttgggaacttgattatctacagccctggtgccgatggaaagatcactggtcactgctgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

108

Amino Acids

11.66

Weight (kDa)

5.72

Isoelectric Point (pI)

20.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	166, 289
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	164, 253
AsuC2I	CCSGG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	1 cut(s)	293
BciT130I	CCWGG	2 cut(s)	168, 291
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	283
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme1390I	CCNGG	3 cut(s)	14, 168, 291
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	164, 253
BmiI	GGNNCC	2 cut(s)	254, 295
BmrFI	CCNGG	3 cut(s)	14, 168, 291
BmsI	GCATC	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	4 cut(s)	13, 74, 130, 289
Bse1I	ACTGG	2 cut(s)	109, 316
BseBI	CCWGG	2 cut(s)	168, 291
BseDI	CCNNGG	4 cut(s)	13, 74, 130, 289
BseGI	GGATG	1 cut(s)	55
BseNI	ACTGG	2 cut(s)	109, 316
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	308
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	91, 130
Bsp143I	GATC	4 cut(s)	3, 142, 217, 306
Bsp19I	CCATGG	2 cut(s)	74, 130
BspANI	GGCC	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	254, 295
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	109, 316
BssECI	CCNNGG	4 cut(s)	13, 74, 130, 289
BssMI	GATC	4 cut(s)	3, 142, 217, 306
BssT1I	CCWWGG	2 cut(s)	74, 130
Bst2UI	CCWGG	2 cut(s)	168, 291
BstDSI	CCRYGG	2 cut(s)	74, 130
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	4 cut(s)	6, 145, 220, 309
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	4 cut(s)	3, 142, 217, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	2 cut(s)	168, 291
BstSCI	CCNGG	3 cut(s)	12, 166, 289
BstSFI	CTRYAG	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	74, 130
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	2 cut(s)	309, 316
Cfr13I	GGNCC	2 cut(s)	164, 253
CsiI	ACCWGGT	1 cut(s)	166
CviAII	CATG	2 cut(s)	75, 131
CviJI	RGCY	5 cut(s)	18, 42, 197, 255, 288
CviKI_1	RGCY	5 cut(s)	18, 42, 197, 255, 288
DpnI	GATC	4 cut(s)	5, 144, 219, 308
DpnII	GATC	4 cut(s)	3, 142, 217, 306
Eco130I	CCWWGG	2 cut(s)	74, 130
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	166, 289
EcoT14I	CCWWGG	2 cut(s)	74, 130
ErhI	CCWWGG	2 cut(s)	74, 130
FaeI	CATG	2 cut(s)	78, 134
FaiI	YATR	3 cut(s)	76, 132, 264
FatI	CATG	2 cut(s)	74, 130
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	322
GluI	GCNGC	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	13
Hin1II	CATG	2 cut(s)	78, 134
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	31, 244
Hpy188III	TCNNGA	3 cut(s)	61, 84, 140
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	78, 134
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 142, 217, 306
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	1 cut(s)	89
MabI	ACCWGGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	4 cut(s)	5, 144, 219, 308
MboI	GATC	4 cut(s)	3, 142, 217, 306
MhlI	GDGCHC	2 cut(s)	91, 130
MluCI	AATT	2 cut(s)	182, 200
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	4 cut(s)	88, 184, 187, 200
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	119, 261
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	3 cut(s)	14, 168, 291
MvaI	CCWGG	2 cut(s)	168, 291
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	14
NcoI	CCATGG	2 cut(s)	74, 130
NdeII	GATC	4 cut(s)	3, 142, 217, 306
NlaIII	CATG	2 cut(s)	78, 134
NlaIV	GGNNCC	2 cut(s)	254, 295
NmuCI	GTSAC	1 cut(s)	314
PflFI	GACNNNGTC	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	166, 289
PspGI	CCWGG	2 cut(s)	166, 289
PspN4I	GGNNCC	2 cut(s)	254, 295
PspPI	GGNCC	2 cut(s)	164, 253
PsyI	GACNNNGTC	1 cut(s)	168
RseI	CAYNNNNRTG	2 cut(s)	119, 261
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	4 cut(s)	3, 142, 217, 306
Sau96I	GGNCC	2 cut(s)	164, 253
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	3 cut(s)	14, 168, 291
SduI	GDGCHC	2 cut(s)	91, 130
SetI	ASST	4 cut(s)	44, 99, 169, 225
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	119, 261
Sse9I	AATT	2 cut(s)	182, 200
StyD4I	CCNGG	3 cut(s)	12, 166, 289
StyI	CCWWGG	2 cut(s)	74, 130
TaqI	TCGA	1 cut(s)	139
TasI	AATT	2 cut(s)	182, 200
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	316, 323
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	314
TspRI	CASTG	2 cut(s)	316, 323
Tth111I	GACNNNGTC	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.