Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003981.1

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Reverse (-)

399 .. 1267

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003981.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgatcaaataccggggcttgaaagagtcagatgttgatagctttgtggatgatgttatcgtgaatgataaaccatgggcatctggagcacaggaggtcttgactggttctcacatttttgtgtgtgcccatggtagtcgagatcgtggatgtggtgtttgtggacctgttctcattgataaattcacaaaggaggctgaattgcgaggactgaaggatcaggtgtttgttagtccttgttctgacattgggggccacaagtatgctgggaacttgattatctacagccctggtgccgatggaaagatcactggccactggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

107

Amino Acids

11.55

Weight (kDa)

6.03

Isoelectric Point (pI)

14.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw21I	GWGCWC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	2 cut(s)	253, 313
ApoI	RAATTY	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	164, 253
AsuC2I	CCSGG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	91
BccI	CCATC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	14, 291
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	164, 253
BmiI	GGNNCC	2 cut(s)	254, 295
BmrFI	CCNGG	2 cut(s)	14, 291
BmsI	GCATC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	14
BsaJI	CCNNGG	4 cut(s)	13, 74, 130, 289
Bse1I	ACTGG	3 cut(s)	109, 316, 323
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	13, 74, 130, 289
BseGI	GGATG	2 cut(s)	55, 155
BseNI	ACTGG	3 cut(s)	109, 316, 323
BseSI	GKGCMC	1 cut(s)	130
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	2 cut(s)	255, 315
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	13
BsnI	GGCC	2 cut(s)	255, 315
Bsp1286I	GDGCHC	2 cut(s)	91, 130
Bsp143I	GATC	4 cut(s)	3, 142, 217, 306
Bsp19I	CCATGG	2 cut(s)	74, 130
BspANI	GGCC	2 cut(s)	255, 315
BspLI	GGNNCC	2 cut(s)	254, 295
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	293
BsrI	ACTGG	3 cut(s)	109, 316, 323
BssECI	CCNNGG	4 cut(s)	13, 74, 130, 289
BssMI	GATC	4 cut(s)	3, 142, 217, 306
BssT1I	CCWWGG	2 cut(s)	74, 130
Bst2UI	CCWGG	1 cut(s)	291
BstDSI	CCRYGG	2 cut(s)	74, 130
BstF5I	GGATG	2 cut(s)	55, 155
BstKTI	GATC	4 cut(s)	6, 145, 220, 309
BstMBI	GATC	4 cut(s)	3, 142, 217, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	12, 289
BstSFI	CTRYAG	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	255, 315
BtgI	CCRYGG	2 cut(s)	74, 130
BtsCI	GGATG	2 cut(s)	55, 155
BtsIMutI	CAGTG	2 cut(s)	309, 316
Cfr13I	GGNCC	2 cut(s)	164, 253
CviAII	CATG	2 cut(s)	75, 131
CviJI	RGCY	6 cut(s)	18, 42, 197, 255, 288, 315
CviKI_1	RGCY	6 cut(s)	18, 42, 197, 255, 288, 315
DpnI	GATC	4 cut(s)	5, 144, 219, 308
DpnII	GATC	4 cut(s)	3, 142, 217, 306
EaeI	YGGCCR	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	74, 130
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	74, 130
ErhI	CCWWGG	2 cut(s)	74, 130
FaeI	CATG	2 cut(s)	78, 134
FaiI	YATR	3 cut(s)	76, 132, 264
FatI	CATG	2 cut(s)	74, 130
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	2 cut(s)	62, 162
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	255, 315
HapII	CCGG	1 cut(s)	13
Hin1II	CATG	2 cut(s)	78, 134
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	31, 244
Hpy188III	TCNNGA	4 cut(s)	61, 84, 100, 140
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	78, 134
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 142, 217, 306
LmnI	GCTCC	1 cut(s)	86
LweI	GCATC	1 cut(s)	89
MalI	GATC	4 cut(s)	5, 144, 219, 308
MboI	GATC	4 cut(s)	3, 142, 217, 306
MhlI	GDGCHC	2 cut(s)	91, 130
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	2 cut(s)	182, 200
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	3 cut(s)	88, 187, 200
Mox20I	TGGCCA	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	315
MslI	CAYNNNNRTG	2 cut(s)	119, 261
Msp20I	TGGCCA	1 cut(s)	315
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	14, 291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	14
NcoI	CCATGG	2 cut(s)	74, 130
NdeII	GATC	4 cut(s)	3, 142, 217, 306
NlaIII	CATG	2 cut(s)	78, 134
NlaIV	GGNNCC	2 cut(s)	254, 295
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	254, 295
PspPI	GGNCC	2 cut(s)	164, 253
RseI	CAYNNNNRTG	2 cut(s)	119, 261
Sau3AI	GATC	4 cut(s)	3, 142, 217, 306
Sau96I	GGNCC	2 cut(s)	164, 253
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	14, 291
SduI	GDGCHC	2 cut(s)	91, 130
SetI	ASST	4 cut(s)	44, 99, 169, 225
SfaNI	GCATC	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	119, 261
Sse9I	AATT	2 cut(s)	182, 200
StyD4I	CCNGG	2 cut(s)	12, 289
StyI	CCWWGG	2 cut(s)	74, 130
TaqI	TCGA	1 cut(s)	139
TasI	AATT	2 cut(s)	182, 200
TscAI	CASTG	2 cut(s)	316, 323
TspRI	CASTG	2 cut(s)	316, 323
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.