RchiOBHm_Chr2g0173141

Altered inheritance of mitochondria protein 32-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001205
Physical Location & Seq
Forward (+)
86262522 .. 86265969
3448 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54038

Sequence Viewer

Length: 1260 bp
ATGCGCATTGCGAACCCACACTCATTTCGTTTCCTCACAACCGTAACGAACCGCTACCTCTTTCTCTCCTCACAACCTCGCTCACCGACTCTGCTACCCCAAACCCTAGCAATGGCCTCCGACGACCTCTCCACCCTGCCCTCCGCCGCCGATGACGAGAAGTACGGGTTCAAGAGGCCGGAGATGTTCCAGAGCAAGCTCGCCGGCACCGTCGACGCCTACGACCGCCACGTGTTCCTCTGCTACAAGAGCCCCGAGGCCTGGCCCGCCCGCGTTGAAGGCTCCGAGTCCGATCCGCTCCCCAAGCTCCTCTCCTCGGCTTTCAAGGCCCGCAAGAACGATATCTCGATCAAGACTAAGCTGACGGTGTGCGAAGGGCGCGACGGAACTGAATTCGCTGACGGCGATGTGTTGATTTTCCCGGATATGATCAAATACCGGGGCTTGAAAGAGTCAGATGTTGATAGCTTTGTGGATGATGTTATCGTGAATGATAAAGCATGGGCGTCTGGAGCACGGGAGGTCTTGACTGGTTCTCACGTTTTTGTGTGTGCCCATGGTAGTCGAGATCGTAGATGTGGTGTTTGTGGACCTGTTCTCATTGATAAATTCATAGAGGAGGCTGAATTGCGAGGACTGAAGGATCAGGTGTTTGTTAGTCCCTGTTCTCACATTGGGGGCCACAAGTATGCTGGGAACTTGATTATCTACAGCCCTGGTGCAGATGGAAAGATCACTGGTCACTGGTATGGCTATGTTGCTCCTGATGATGTACCGGAATTGCTTGATGAGCATATTGGGAAAGGGAAGATTATAGAACGATTATGGAGAGGCGAAATGGGAGTATCTGCTGAGGAAGCTGAAAAGGTTAATGAACACAAGCTTCCAAATGGAGAAAGTGAAAAATTTAAGGACCAGAAGCTTCCAATTGGAGAAGGTTCTAAGAAAAGCAAGGAAAACCCCCAAGAAAACGGCACTCAGATTCAGAACAGCAATGATAACTTTGCAGGTTGTTGCCAGGGTGCTAATGGAGTCTCATGCTGCAGAGATGGAAATTTGGAGCAGAACAGTGGAATCGAGGAAAAGAAGCAGAAAGAAACTACGGAAGCTAGCAGTGGCAAGAAGGATGCAGTGGGATGCAAACTGACAAGCTACATGGGAAAGTGGGAGCAAAGTGATATCCTTGCAGCTGTCGCGGTGGTGGGAGCAGTGGCAACTGTGGGTGTGGCGGTCTATAGCTTTTACAGAAGGTCAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

419

Amino Acids

45.88

Weight (kDa)

5.82

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suc_Fer-like PF06999 67 - 278 8.8e-47 Sucrase/ferredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 998
AccB1I GGYRCC 1 cut(s) 206
AccBSI CCGCTC 1 cut(s) 298
AccI GTMKAC 1 cut(s) 213
AccII CGCG 3 cut(s) 273, 381, 1196
AclWI GGATC 2 cut(s) 287, 651
AcsI RAATTY 4 cut(s) 392, 608, 905, 1054
AcuI CTGAAG 1 cut(s) 659
AcvI CACGTG 1 cut(s) 232
AcyI GRCGYC 2 cut(s) 216, 506
AfaI GTAC 2 cut(s) 164, 774
AfiI CCNNNNNNNGG 3 cut(s) 112, 261, 316
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 4 cut(s) 172, 278, 325, 448
AjnI CCWGG 3 cut(s) 260, 715, 1017
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 1039
AlwI GGATC 2 cut(s) 287, 651
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 6 cut(s) 114, 176, 258, 263, 327, 679
ApeKI GCWGC 2 cut(s) 1041, 1187
ApoI RAATTY 4 cut(s) 392, 608, 905, 1054
AspLEI GCGC 2 cut(s) 6, 381
AspS9I GGNCC 5 cut(s) 264, 328, 590, 679, 913
AsuC2I CCSGG 2 cut(s) 422, 440
AsuHPI GGTGA 1 cut(s) 75
AsuNHI GCTAGC 1 cut(s) 1109
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 2 cut(s) 590, 913
BaeGI GKGCMC 1 cut(s) 556
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 254
BbrPI CACGTG 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 517
BbvCI CCTCAGC 1 cut(s) 852
BbvI GCAGC 2 cut(s) 1028, 1199
BccI CCATC 2 cut(s) 719, 1043
BceAI ACGGC 2 cut(s) 418, 988
BciT130I CCWGG 3 cut(s) 262, 717, 1019
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 2 cut(s) 422, 440
BcoDI GTCTC 1 cut(s) 1039
BfaI CTAG 2 cut(s) 107, 1110
BfmI CTRYAG 3 cut(s) 709, 1042, 1234
BfuAI ACCTGC 1 cut(s) 998
BisI GCNGC 3 cut(s) 147, 1042, 1188
BlsI GCNGC 3 cut(s) 148, 1043, 1189
Bme1390I CCNGG 5 cut(s) 262, 422, 440, 717, 1019
Bme18I GGWCC 2 cut(s) 590, 913
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 5 cut(s) 264, 328, 590, 679, 913
BmiI GGNNCC 3 cut(s) 208, 283, 680
BmrFI CCNGG 5 cut(s) 262, 422, 440, 717, 1019
BmsI GCATC 2 cut(s) 1117, 1127
BmtI GCTAGC 1 cut(s) 1113
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 852
BpuMI CCSGG 2 cut(s) 422, 440
BsaAI YACGTR 1 cut(s) 232
BsaHI GRCGYC 2 cut(s) 216, 506
BsaJI CCNNGG 6 cut(s) 255, 315, 439, 556, 715, 1018
BsaWI WCCGGW 1 cut(s) 775
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 261, 316
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 3 cut(s) 535, 742, 749
Bse3DI GCAATG 3 cut(s) 6, 117, 1000
BseBI CCWGG 3 cut(s) 262, 717, 1019
BseDI CCNNGG 6 cut(s) 255, 315, 439, 556, 715, 1018
BseGI GGATG 3 cut(s) 481, 1132, 1142
BseLI CCNNNNNNNGG 3 cut(s) 112, 261, 316
BseMI GCAATG 3 cut(s) 6, 117, 1000
BseMII CTCAG 2 cut(s) 843, 992
BseNI ACTGG 3 cut(s) 535, 742, 749
BseRI GAGGAG 4 cut(s) 58, 299, 304, 632
BseSI GKGCMC 1 cut(s) 556
BseXI GCAGC 2 cut(s) 1028, 1199
BseYI CCCAGC 1 cut(s) 692
BsgI GTGCAG 1 cut(s) 741
Bsh1236I CGCG 3 cut(s) 273, 381, 1196
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 6 cut(s) 116, 178, 260, 265, 329, 681
BshNI GGYRCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 5 cut(s) 179, 204, 422, 439, 776
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 3 cut(s) 112, 261, 316
BsmAI GTCTC 1 cut(s) 1039
BsmFI GGGAC 1 cut(s) 645
BsnI GGCC 6 cut(s) 116, 178, 260, 265, 329, 681
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 3 cut(s) 254, 517, 556
Bsp143I GATC 6 cut(s) 292, 348, 429, 568, 643, 732
Bsp19I CCATGG 1 cut(s) 556
BspANI GGCC 6 cut(s) 116, 178, 260, 265, 329, 681
BspCNI CTCAG 2 cut(s) 844, 991
BspFNI CGCG 3 cut(s) 273, 381, 1196
BspLI GGNNCC 3 cut(s) 208, 283, 680
BspMAI CTGCAG 1 cut(s) 1046
BspMI ACCTGC 1 cut(s) 998
BspOI GCTAGC 1 cut(s) 1113
BspPI GGATC 2 cut(s) 287, 651
BspT107I GGYRCC 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 3 cut(s) 6, 117, 1000
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 3 cut(s) 535, 742, 749
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 6 cut(s) 255, 315, 439, 556, 715, 1018
BssMI GATC 6 cut(s) 292, 348, 429, 568, 643, 732
BssNI GRCGYC 2 cut(s) 216, 506
BssT1I CCWWGG 1 cut(s) 556
Bst2UI CCWGG 3 cut(s) 262, 717, 1019
Bst4CI ACNGT 5 cut(s) 43, 211, 367, 1070, 1219
BstACI GRCGYC 2 cut(s) 216, 506
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 7 cut(s) 197, 201, 205, 267, 271, 331, 1111
BstDEI CTNAG 4 cut(s) 357, 852, 942, 978
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 3 cut(s) 481, 1132, 1142
BstFNI CGCG 3 cut(s) 273, 381, 1196
BstHHI GCGC 2 cut(s) 6, 381
BstKTI GATC 6 cut(s) 295, 351, 432, 571, 646, 735
BstMAI GTCTC 1 cut(s) 1039
BstMBI GATC 6 cut(s) 292, 348, 429, 568, 643, 732
BstMCI CGRYCG 1 cut(s) 226
BstNI CCWGG 3 cut(s) 262, 717, 1019
BstSCI CCNGG 5 cut(s) 260, 420, 438, 715, 1017
BstSFI CTRYAG 3 cut(s) 709, 1042, 1234
BstSLI GKGCMC 1 cut(s) 556
BstUI CGCG 3 cut(s) 273, 381, 1196
BstV1I GCAGC 2 cut(s) 1028, 1199
BsuRI GGCC 6 cut(s) 116, 178, 260, 265, 329, 681
BtgI CCRYGG 1 cut(s) 556
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 3 cut(s) 481, 1132, 1142
BtsI GCAGTG 3 cut(s) 1120, 1137, 1215
BtsIMutI CAGTG 6 cut(s) 735, 742, 1075, 1120, 1137, 1215
BveI ACCTGC 1 cut(s) 998
Cac8I GCNNGC 7 cut(s) 197, 201, 205, 267, 271, 331, 1111
CfoI GCGC 2 cut(s) 6, 381
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 5 cut(s) 264, 328, 590, 679, 913
CseI GACGC 2 cut(s) 224, 495
Csp6I GTAC 2 cut(s) 163, 773
CviAII CATG 4 cut(s) 501, 557, 1038, 1156
CviQI GTAC 2 cut(s) 163, 773
DdeI CTNAG 4 cut(s) 357, 852, 942, 978
DpnI GATC 6 cut(s) 294, 350, 431, 570, 645, 734
DpnII GATC 6 cut(s) 292, 348, 429, 568, 643, 732
EciI GGCGGA 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 556
Eco147I AGGCCT 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 254
Eco32I GATATC 2 cut(s) 343, 1180
Eco47I GGWCC 2 cut(s) 590, 913
Eco57I CTGAAG 1 cut(s) 659
Eco72I CACGTG 1 cut(s) 232
Eco88I CYCGRG 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 3 cut(s) 260, 715, 1017
EcoRV GATATC 2 cut(s) 343, 1180
EcoT14I CCWWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 4 cut(s) 504, 560, 1041, 1159
FaqI GGGAC 1 cut(s) 645
FatI CATG 4 cut(s) 500, 556, 1037, 1155
FauI CCCGC 3 cut(s) 274, 278, 338
FbaI TGATCA 1 cut(s) 429
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 147, 1042, 1188
FokI GGATG 3 cut(s) 488, 1139, 1149
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 3 cut(s) 147, 1042, 1188
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 107, 1110
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 380
GluI GCNGC 3 cut(s) 147, 1042, 1188
GsaI CCCAGC 1 cut(s) 696
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 6 cut(s) 116, 178, 260, 265, 329, 681
HapII CCGG 5 cut(s) 179, 204, 422, 439, 776
HgaI GACGC 2 cut(s) 224, 495
HhaI GCGC 2 cut(s) 6, 381
Hin1I GRCGYC 2 cut(s) 216, 506
Hin1II CATG 4 cut(s) 504, 560, 1041, 1159
Hin6I GCGC 2 cut(s) 4, 379
HinP1I GCGC 2 cut(s) 4, 379
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 2 cut(s) 881, 920
HinfI GANTC 6 cut(s) 88, 287, 452, 982, 1032, 1074
HpaII CCGG 5 cut(s) 179, 204, 422, 439, 776
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 2 cut(s) 214, 590
Hpy188I TCNGA 6 cut(s) 121, 286, 292, 457, 981, 987
Hpy188III TCNNGA 9 cut(s) 172, 190, 346, 352, 487, 510, 526, 566, 764
Hpy8I GTNNAC 2 cut(s) 214, 590
Hpy99I CGWCG 4 cut(s) 125, 215, 218, 386
HpyAV CCTTC 6 cut(s) 272, 368, 634, 929, 1117, 1242
HpyCH4III ACNGT 5 cut(s) 43, 211, 367, 1070, 1219
HpyCH4IV ACGT 2 cut(s) 231, 540
HpyCH4V TGCA 6 cut(s) 722, 1007, 1044, 1130, 1140, 1187
HpyF3I CTNAG 4 cut(s) 357, 852, 942, 978
HpySE526I ACGT 2 cut(s) 231, 540
Hsp92I GRCGYC 2 cut(s) 216, 506
Hsp92II CATG 4 cut(s) 504, 560, 1041, 1159
HspAI GCGC 2 cut(s) 4, 379
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 6 cut(s) 292, 348, 429, 568, 643, 732
LmnI GCTCC 8 cut(s) 287, 303, 312, 512, 766, 1060, 1168, 1205
Lsp1109I GCAGC 2 cut(s) 1028, 1199
LweI GCATC 2 cut(s) 1117, 1127
MaeI CTAG 2 cut(s) 107, 1110
MaeII ACGT 2 cut(s) 231, 540
MaeIII GTNAC 2 cut(s) 43, 740
MalI GATC 6 cut(s) 294, 350, 431, 570, 645, 734
MbiI CCGCTC 1 cut(s) 298
MboI GATC 6 cut(s) 292, 348, 429, 568, 643, 732
MboII GAAGA 1 cut(s) 820
MfeI CAATTG 1 cut(s) 927
MhlI GDGCHC 3 cut(s) 254, 517, 556
MluCI AATT 7 cut(s) 392, 608, 626, 779, 905, 927, 1054
MlyI GAGTC 4 cut(s) 82, 296, 461, 1041
MmeI TCCRAC 1 cut(s) 144
MroNI GCCGGC 1 cut(s) 203
MseI TTAA 2 cut(s) 870, 909
MslI CAYNNNNRTG 2 cut(s) 687, 747
MspA1I CMGCKG 1 cut(s) 1190
MspI CCGG 5 cut(s) 179, 204, 422, 439, 776
MspR9I CCNGG 5 cut(s) 262, 422, 440, 717, 1019
MunI CAATTG 1 cut(s) 927
MvaI CCWGG 3 cut(s) 262, 717, 1019
MvnI CGCG 3 cut(s) 273, 381, 1196
NaeI GCCGGC 1 cut(s) 205
NciI CCSGG 2 cut(s) 422, 440
NcoI CCATGG 1 cut(s) 556
NdeII GATC 6 cut(s) 292, 348, 429, 568, 643, 732
NgoMIV GCCGGC 1 cut(s) 203
NheI GCTAGC 1 cut(s) 1109
NlaIII CATG 4 cut(s) 504, 560, 1041, 1159
NlaIV GGNNCC 3 cut(s) 208, 283, 680
NmeAIII GCCGAG 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 740
NsbI TGCGCA 1 cut(s) 5
PceI AGGCCT 1 cut(s) 260
PcsI WCGNNNNNNNCGW 4 cut(s) 207, 219, 228, 402
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 982, 1074
PfoI TCCNGGA 1 cut(s) 420
PkrI GCNGC 3 cut(s) 148, 1043, 1189
PleI GAGTC 4 cut(s) 82, 295, 460, 1040
PmaCI CACGTG 1 cut(s) 232
PmlI CACGTG 1 cut(s) 232
PpsI GAGTC 4 cut(s) 82, 295, 460, 1040
Ppu21I YACGTR 1 cut(s) 232
Psp6I CCWGG 3 cut(s) 260, 715, 1017
PspCI CACGTG 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 692
PspGI CCWGG 3 cut(s) 260, 715, 1017
PspN4I GGNNCC 3 cut(s) 208, 283, 680
PspPI GGNCC 5 cut(s) 264, 328, 590, 679, 913
PstI CTGCAG 1 cut(s) 1046
PvuII CAGCTG 1 cut(s) 1190
RsaI GTAC 2 cut(s) 164, 774
RsaNI GTAC 2 cut(s) 163, 773
RseI CAYNNNNRTG 2 cut(s) 687, 747
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 870, 909
SatI GCNGC 3 cut(s) 147, 1042, 1188
Sau3AI GATC 6 cut(s) 292, 348, 429, 568, 643, 732
Sau96I GGNCC 5 cut(s) 264, 328, 590, 679, 913
SchI GAGTC 4 cut(s) 82, 296, 461, 1041
ScrFI CCNGG 5 cut(s) 262, 422, 440, 717, 1019
SduI GDGCHC 3 cut(s) 254, 517, 556
SfaNI GCATC 2 cut(s) 1117, 1127
SfcI CTRYAG 3 cut(s) 709, 1042, 1234
SgrDI CGTCGACG 1 cut(s) 212
SinI GGWCC 2 cut(s) 590, 913
SmiMI CAYNNNNRTG 2 cut(s) 687, 747
Sse9I AATT 7 cut(s) 392, 608, 626, 779, 905, 927, 1054
SseBI AGGCCT 1 cut(s) 260
SspMI CTAG 2 cut(s) 107, 1110
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 5 cut(s) 260, 420, 438, 715, 1017
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 5 cut(s) 43, 211, 367, 1070, 1219
TaiI ACGT 2 cut(s) 234, 543
TaqI TCGA 4 cut(s) 213, 347, 565, 1077
TasI AATT 7 cut(s) 392, 608, 626, 779, 905, 927, 1054
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 982, 1074
Tru1I TTAA 2 cut(s) 870, 909
Tru9I TTAA 2 cut(s) 870, 909
TscAI CASTG 6 cut(s) 742, 749, 1075, 1120, 1137, 1215
TseFI GTSAC 1 cut(s) 740
TseI GCWGC 2 cut(s) 1041, 1187
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 2 cut(s) 601, 888
TspGWI ACGGA 2 cut(s) 399, 1118
TspRI CASTG 6 cut(s) 742, 749, 1075, 1120, 1137, 1215
VpaK11BI GGWCC 2 cut(s) 590, 913
XapI RAATTY 4 cut(s) 392, 608, 905, 1054
XcmI CCANNNNNNNNNTGG 2 cut(s) 689, 1025
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 107, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.