Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005168.1

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Forward (+)

15132 .. 17425

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005168.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgtatcattcacttccgatgtggtataagagagttgtggatcttcataacatgcttggaggagagaatcatcatcatctctgtcagcatcacctttgttcttcaatttatgaagaaatggagctgaaaccaggtctctcaactctcgtcaccgacggagcttctggaattgtttgtaatttgatatcaatatggattctggaacgaggggttctgtacttgttgcgttatttctctagtcggctttcaagccccgccagaacgatatctcgatcaaggtcggtgcctcttgctttgattttagggcgcgacggaactgaattcgctgacggcgatgtgttgattttcccggatatgatcaaataccggggcttgaaagagtcagatgttgatagctttgtggatgatgttatcgtgaatgataaaccatgggcatctggatcacaggaggtcttgactggttctcacatttttgtgtgtgcccatggtagtcgagatcgtagatgtggtgtttgtggacctgttctcattgataaattcacagaggaggctgaattgcgaggactgaaggatcaggtgtttgttagtccttgttctcacattgggggccacaagtatgttgggaacttgattatctacagccctggtgccgatggaaagatcactcgtcactgctgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

226

Amino Acids

25.16

Weight (kDa)

6.44

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	283, 647
AccII	CGCG	1 cut(s)	309
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	3 cut(s)	48, 448, 579
AcsI	RAATTY	2 cut(s)	320, 536
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	105, 249, 376
AjnI	CCWGG	2 cut(s)	130, 643
AluBI	AGCT	3 cut(s)	124, 161, 396
AluI	AGCT	3 cut(s)	124, 161, 396
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	3 cut(s)	48, 448, 579
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	1 cut(s)	675
ApoI	RAATTY	2 cut(s)	320, 536
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	518, 607
AsuC2I	CCSGG	2 cut(s)	350, 368
AsuHPI	GGTGA	2 cut(s)	83, 142
AvaII	GGWCC	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	484
BanI	GGYRCC	2 cut(s)	283, 647
BbvI	GCAGC	1 cut(s)	662
BccI	CCATC	1 cut(s)	647
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	2 cut(s)	132, 645
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	2 cut(s)	350, 368
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	637
BisI	GCNGC	1 cut(s)	676
BlsI	GCNGC	1 cut(s)	677
Bme1390I	CCNGG	4 cut(s)	132, 350, 368, 645
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	518, 607
BmiI	GGNNCC	3 cut(s)	285, 608, 649
BmrFI	CCNGG	4 cut(s)	132, 350, 368, 645
BmsI	GCATC	2 cut(s)	97, 443
BpuMI	CCSGG	2 cut(s)	350, 368
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	367, 428, 484, 643
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	2 cut(s)	132, 645
BseDI	CCNNGG	4 cut(s)	367, 428, 484, 643
BseGI	GGATG	1 cut(s)	409
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	2 cut(s)	75, 560
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	609
BshNI	GGYRCC	2 cut(s)	283, 647
BsiSI	CCGG	2 cut(s)	350, 367
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	609
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	7 cut(s)	40, 272, 357, 440, 496, 571, 660
Bsp19I	CCATGG	2 cut(s)	428, 484
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	609
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	285, 608, 649
BspPI	GGATC	3 cut(s)	48, 448, 579
BspT107I	GGYRCC	2 cut(s)	283, 647
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	4 cut(s)	367, 428, 484, 643
BssMI	GATC	7 cut(s)	40, 272, 357, 440, 496, 571, 660
BssT1I	CCWWGG	2 cut(s)	428, 484
Bst2UI	CCWGG	2 cut(s)	132, 645
BstDSI	CCRYGG	2 cut(s)	428, 484
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	7 cut(s)	43, 275, 360, 443, 499, 574, 663
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	7 cut(s)	40, 272, 357, 440, 496, 571, 660
BstNI	CCWGG	2 cut(s)	132, 645
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	4 cut(s)	130, 348, 366, 643
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	484
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	662
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	609
BtgI	CCRYGG	2 cut(s)	428, 484
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	409
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	1 cut(s)	670
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	518, 607
CsiI	ACCWGGT	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	3 cut(s)	52, 429, 485
CviJI	RGCY	9 cut(s)	124, 161, 244, 252, 372, 396, 551, 609, 642
CviKI_1	RGCY	9 cut(s)	124, 161, 244, 252, 372, 396, 551, 609, 642
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	7 cut(s)	42, 274, 359, 442, 498, 573, 662
DpnII	GATC	7 cut(s)	40, 272, 357, 440, 496, 571, 660
Eco130I	CCWWGG	2 cut(s)	428, 484
Eco31I	GGTCTC	1 cut(s)	140
Eco32I	GATATC	2 cut(s)	186, 267
Eco47I	GGWCC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	130, 643
EcoRV	GATATC	2 cut(s)	186, 267
EcoT14I	CCWWGG	2 cut(s)	428, 484
ErhI	CCWWGG	2 cut(s)	428, 484
FaeI	CATG	3 cut(s)	55, 432, 488
FaiI	YATR	9 cut(s)	27, 48, 53, 111, 193, 356, 430, 486, 618
FatI	CATG	3 cut(s)	51, 428, 484
FauI	CCCGC	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	676
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	676
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	1 cut(s)	676
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	2 cut(s)	350, 367
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	55, 432, 488
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	67, 196, 380
HpaII	CCGG	2 cut(s)	350, 367
HphI	GGTGA	2 cut(s)	83, 142
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	2 cut(s)	18, 385
Hpy188III	TCNNGA	7 cut(s)	165, 200, 270, 415, 438, 454, 494
Hpy8I	GTNNAC	1 cut(s)	518
Hpy99I	CGWCG	2 cut(s)	158, 314
HpyAV	CCTTC	1 cut(s)	562
Hsp92II	CATG	3 cut(s)	55, 432, 488
HspAI	GCGC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	7 cut(s)	40, 272, 357, 440, 496, 571, 660
LmnI	GCTCC	2 cut(s)	121, 158
Lsp1109I	GCAGC	1 cut(s)	662
LweI	GCATC	2 cut(s)	97, 443
MabI	ACCWGGT	1 cut(s)	130
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	148, 668
MalI	GATC	7 cut(s)	42, 274, 359, 442, 498, 573, 662
MboI	GATC	7 cut(s)	40, 272, 357, 440, 496, 571, 660
MboII	GAAGA	3 cut(s)	35, 93, 125
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	6 cut(s)	105, 168, 178, 320, 536, 554
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	7 cut(s)	53, 200, 297, 442, 538, 541, 554
MslI	CAYNNNNRTG	2 cut(s)	473, 615
MspI	CCGG	2 cut(s)	350, 367
MspR9I	CCNGG	4 cut(s)	132, 350, 368, 645
MvaI	CCWGG	2 cut(s)	132, 645
MvnI	CGCG	1 cut(s)	309
NciI	CCSGG	2 cut(s)	350, 368
NcoI	CCATGG	2 cut(s)	428, 484
NdeII	GATC	7 cut(s)	40, 272, 357, 440, 496, 571, 660
NlaIII	CATG	3 cut(s)	55, 432, 488
NlaIV	GGNNCC	3 cut(s)	285, 608, 649
NmuCI	GTSAC	2 cut(s)	148, 668
NspI	RCATGY	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	67, 196
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	677
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Psp6I	CCWGG	2 cut(s)	130, 643
PspGI	CCWGG	2 cut(s)	130, 643
PspN4I	GGNNCC	3 cut(s)	285, 608, 649
PspPI	GGNCC	2 cut(s)	518, 607
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	473, 615
SatI	GCNGC	1 cut(s)	676
Sau3AI	GATC	7 cut(s)	40, 272, 357, 440, 496, 571, 660
Sau96I	GGNCC	2 cut(s)	518, 607
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	4 cut(s)	132, 350, 368, 645
SduI	GDGCHC	1 cut(s)	484
SetI	ASST	9 cut(s)	96, 126, 136, 163, 281, 398, 453, 523, 579
SexAI	ACCWGGT	1 cut(s)	130
SfaNI	GCATC	2 cut(s)	97, 443
SfcI	CTRYAG	1 cut(s)	637
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	2 cut(s)	473, 615
Sse9I	AATT	6 cut(s)	105, 168, 178, 320, 536, 554
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	4 cut(s)	130, 348, 366, 643
StyI	CCWWGG	2 cut(s)	428, 484
TaqI	TCGA	2 cut(s)	271, 493
TasI	AATT	6 cut(s)	105, 168, 178, 320, 536, 554
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	67, 196
TscAI	CASTG	1 cut(s)	677
TseFI	GTSAC	2 cut(s)	148, 668
TseI	GCWGC	1 cut(s)	675
Tsp45I	GTSAC	2 cut(s)	148, 668
TspDTI	ATGAA	2 cut(s)	35, 126
TspGWI	ACGGA	2 cut(s)	171, 327
TspRI	CASTG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	2 cut(s)	320, 536
XceI	RCATGY	1 cut(s)	55
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.