Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Forward (+)

45728038 .. 45728852

Gene Structure 815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1190200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATTCTGGGGTTGTTTTTGTTTGTTGATCAAAGGGGCTTGAAAGAGTCAAATGTGGATAGCTTTGTTGATGATGTCCTTGTGAATGATAGACCATGGGCTTCGGGAGTGCAAGAGTCATTGACTAGCCCCCATGTATTTGCCCTTATATTTGTATACACACATATGAGTCAAGAGGAATGGAATCGTGATAGTGCACGTGTTCGCATTGATAAGTTGAAAGAGGAGTTTGAGATGCGAGGATTGACGAATCAGGTATTTGTTACTGCTTGCTTTCACCTTGAAGGCCACAACTATGCTGGAATATTCACGACCTACGACCCAGATGGAAGCATGACATACCATTGGTATCCATTTGTCAGTCCTGGTTATGTGCCGGAATTGCTTGATGAACATATTGGGAAGGGAGAGATTATAGAACGACATTGGAGCTTGATCATACCTATTCTTACTCAATTGCTATTGACGAAACTTAGAGTTGAATCTTTAAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005839 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010499 GO:0012505 GO:0016020 GO:0019538 GO:0019773 GO:0019941 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0042175 GO:0042802 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

166

Amino Acids

19.09

Weight (kDa)

5.03

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suc_Fer-like	PF06999	13 - 143	2.5e-11	Sucrase/ferredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AcvI	CACGTG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	43, 220, 284, 482
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	63, 432
AluI	AGCT	2 cut(s)	63, 432
Alw21I	GWGCWC	1 cut(s)	199
Alw44I	GTGCAC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	286
ApaLI	GTGCAC	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	199
BbrPI	CACGTG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	199
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	366
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	2 cut(s)	28, 435
BfaI	CTAG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	360
Bme1390I	CCNGG	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	199
BshFI	GGCC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	377
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	28, 435
Bsp19I	CCATGG	1 cut(s)	95
BspANI	GGCC	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	2 cut(s)	28, 435
BssNAI	GTATAC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	95
Bst1107I	GTATAC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	473
BstDSI	CCRYGG	1 cut(s)	95
BstKTI	GATC	2 cut(s)	31, 438
BstMBI	GATC	2 cut(s)	28, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstSLI	GKGCMC	1 cut(s)	199
BstZ17I	GTATAC	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	271
CviAII	CATG	3 cut(s)	96, 134, 334
CviJI	RGCY	6 cut(s)	39, 63, 101, 129, 288, 432
CviKI_1	RGCY	6 cut(s)	39, 63, 101, 129, 288, 432
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	2 cut(s)	30, 437
DpnII	GATC	2 cut(s)	28, 435
DraI	TTTAAA	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	95
Eco72I	CACGTG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	3 cut(s)	99, 137, 337
FatI	CATG	3 cut(s)	95, 133, 333
FauNDI	CATATG	1 cut(s)	165
FbaI	TGATCA	2 cut(s)	28, 435
FblI	GTMKAC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	377
Hin1II	CATG	3 cut(s)	99, 137, 337
HinfI	GANTC	7 cut(s)	4, 47, 116, 169, 184, 250, 482
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	157, 197
Hpy188III	TCNNGA	4 cut(s)	105, 173, 188, 310
Hpy8I	GTNNAC	2 cut(s)	157, 197
HpyAV	CCTTC	2 cut(s)	278, 397
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	112, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	1 cut(s)	473
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	3 cut(s)	99, 137, 337
Ksp22I	TGATCA	2 cut(s)	28, 435
Kzo9I	GATC	2 cut(s)	28, 435
LmnI	GCTCC	1 cut(s)	429
LpnPI	CCDG	6 cut(s)	239, 285, 336, 351, 378, 390
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	30, 437
MboI	GATC	2 cut(s)	28, 435
MfeI	CAATTG	1 cut(s)	455
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	3 cut(s)	380, 455, 490
MlyI	GAGTC	3 cut(s)	56, 125, 178
MnlI	CCTC	3 cut(s)	169, 217, 233
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	2 cut(s)	164, 294
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	2 cut(s)	28, 435
NlaIII	CATG	3 cut(s)	99, 137, 337
PfeI	GAWTC	4 cut(s)	4, 184, 250, 482
PleI	GAGTC	3 cut(s)	55, 124, 177
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	3 cut(s)	55, 124, 177
Ppu21I	YACGTR	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	364
PspCI	CACGTG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	164, 294
SaqAI	TTAA	1 cut(s)	488
Sau3AI	GATC	2 cut(s)	28, 435
SchI	GAGTC	3 cut(s)	56, 125, 178
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	7 cut(s)	65, 202, 258, 282, 317, 434, 445
SfaNI	GCATC	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	164, 294
Sse9I	AATT	3 cut(s)	380, 455, 490
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	95
TaiI	ACGT	1 cut(s)	202
TasI	AATT	3 cut(s)	380, 455, 490
TfiI	GAWTC	4 cut(s)	4, 184, 250, 482
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TspDTI	ATGAA	1 cut(s)	405
VneI	GTGCAC	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.