Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002298.1

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Reverse (-)

44716 .. 46562

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002298.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgcttgctagcatgacggggatgatagatggacggtggaatggtcagcacttgcttggagcggcggacacgccaacggtgataaggagaggtggtgatgctcgccgaaaactggagctgagatcagggaggaggaaaagaaggccgaagagcagagaggagggagaggaagaagaggccgtcgccttctgctgctccgctgacaacttggtcctctgccaagagtgcgactgggacgcttgtggcagctgctccgtctccaccgcacacgatcgcaccccgatcgagggcttctccagctgccccttctcgtacagttcatccagatctcggagattcattctggtttccgatggctcagcctctcgtaaattagacgacaatcgtgacgatgaagatgttgatagctttgtggatgatgttatcgtgaatgataaaccatgggcatctggatcacaggaggtcttgactggttctcacatttttgtgtgtgcccatggtagtcgagatcgtagatgtggtgtttgtggacctgttctcattgataaattcacagaggaggctgcattgcgaggactgaaggatcaggtgtttgttagtccttgttctgacattgggggccacaagtatgccgggaacttgattatctacagccctggtgccgatggaaagatcactggccactggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

229

Amino Acids

25.04

Weight (kDa)

5.71

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	659
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	4 cut(s)	62, 65, 198, 264
AclWI	GGATC	2 cut(s)	460, 591
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	4 cut(s)	112, 286, 287, 330
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	4 cut(s)	118, 249, 300, 408
AluI	AGCT	4 cut(s)	118, 249, 300, 408
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	2 cut(s)	460, 591
AoxI	GGCC	4 cut(s)	143, 177, 619, 679
ApeKI	GCWGC	5 cut(s)	192, 246, 249, 300, 563
ApoI	RAATTY	1 cut(s)	548
AspS9I	GGNCC	3 cut(s)	211, 530, 619
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	2 cut(s)	91, 107
AsuNHI	GCTAGC	1 cut(s)	8
AvaII	GGWCC	2 cut(s)	211, 530
BaeGI	GKGCMC	1 cut(s)	496
BalI	TGGCCA	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	659
BbvI	GCAGC	5 cut(s)	179, 236, 258, 287, 550
BccI	CCATC	3 cut(s)	23, 347, 659
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	657
BcnI	CCSGG	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	649
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	6 cut(s)	63, 193, 247, 250, 301, 564
BlpI	GCTNAGC	1 cut(s)	358
BlsI	GCNGC	6 cut(s)	64, 194, 248, 251, 302, 565
Bme1390I	CCNGG	2 cut(s)	634, 657
Bme18I	GGWCC	2 cut(s)	211, 530
BmgT120I	GGNCC	3 cut(s)	211, 530, 619
BmiI	GGNNCC	2 cut(s)	620, 661
BmrFI	CCNGG	2 cut(s)	634, 657
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	2 cut(s)	88, 455
BmtI	GCTAGC	1 cut(s)	12
BmuI	ACTGGG	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	2 cut(s)	134, 280
Bpu1102I	GCTNAGC	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	634
BsaJI	CCNNGG	3 cut(s)	440, 496, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 286, 287, 330
Bse1I	ACTGG	5 cut(s)	117, 236, 475, 682, 689
Bse3DI	GCAATG	1 cut(s)	566
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	3 cut(s)	440, 496, 655
BseGI	GGATG	3 cut(s)	27, 320, 421
BseLI	CCNNNNNNNGG	4 cut(s)	112, 286, 287, 330
BseMI	GCAATG	1 cut(s)	566
BseMII	CTCAG	2 cut(s)	110, 372
BseNI	ACTGG	5 cut(s)	117, 236, 475, 682, 689
BseRI	GAGGAG	3 cut(s)	145, 173, 572
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	5 cut(s)	179, 236, 258, 287, 550
Bsh1285I	CGRYCG	2 cut(s)	274, 285
BshFI	GGCC	4 cut(s)	145, 179, 621, 681
BshNI	GGYRCC	1 cut(s)	659
BsiEI	CGRYCG	2 cut(s)	274, 285
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	4 cut(s)	112, 286, 287, 330
BsmAI	GTCTC	1 cut(s)	262
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	4 cut(s)	145, 179, 621, 681
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	8 cut(s)	122, 271, 282, 326, 452, 508, 583, 672
Bsp1720I	GCTNAGC	1 cut(s)	358
Bsp19I	CCATGG	2 cut(s)	440, 496
BspACI	CCGC	4 cut(s)	62, 65, 198, 264
BspANI	GGCC	4 cut(s)	145, 179, 621, 681
BspCNI	CTCAG	2 cut(s)	111, 371
BspLI	GGNNCC	2 cut(s)	620, 661
BspOI	GCTAGC	1 cut(s)	12
BspPI	GGATC	2 cut(s)	460, 591
BspQI	GCTCTTC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	659
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	566
BsrI	ACTGG	5 cut(s)	117, 236, 475, 682, 689
BssECI	CCNNGG	3 cut(s)	440, 496, 655
BssMI	GATC	8 cut(s)	122, 271, 282, 326, 452, 508, 583, 672
BssT1I	CCWWGG	2 cut(s)	440, 496
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	3 cut(s)	36, 79, 317
Bst6I	CTCTTC	2 cut(s)	143, 168
BstC8I	GCNNGC	3 cut(s)	6, 10, 103
BstDEI	CTNAG	2 cut(s)	119, 358
BstDSI	CCRYGG	2 cut(s)	440, 496
BstF5I	GGATG	3 cut(s)	27, 320, 421
BstKTI	GATC	8 cut(s)	125, 274, 285, 329, 455, 511, 586, 675
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	8 cut(s)	122, 271, 282, 326, 452, 508, 583, 672
BstMCI	CGRYCG	2 cut(s)	274, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 297
BstNI	CCWGG	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	632, 655
BstSFI	CTRYAG	1 cut(s)	649
BstSLI	GKGCMC	1 cut(s)	496
BstV1I	GCAGC	5 cut(s)	179, 236, 258, 287, 550
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	4 cut(s)	145, 179, 621, 681
BtgI	CCRYGG	2 cut(s)	440, 496
BtsCI	GGATG	3 cut(s)	27, 320, 421
BtsIMutI	CAGTG	2 cut(s)	675, 682
Cac8I	GCNNGC	3 cut(s)	6, 10, 103
Cfr13I	GGNCC	3 cut(s)	211, 530, 619
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	13, 441, 497
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	2 cut(s)	119, 358
DpnI	GATC	8 cut(s)	124, 273, 284, 328, 454, 510, 585, 674
DpnII	GATC	8 cut(s)	122, 271, 282, 326, 452, 508, 583, 672
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	2 cut(s)	143, 168
EarI	CTCTTC	2 cut(s)	143, 168
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	440, 496
Eco47I	GGWCC	2 cut(s)	211, 530
Eco57I	CTGAAG	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	2 cut(s)	440, 496
ErhI	CCWWGG	2 cut(s)	440, 496
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	3 cut(s)	16, 444, 500
FaiI	YATR	4 cut(s)	14, 442, 498, 630
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	12, 440, 496
Fnu4HI	GCNGC	6 cut(s)	63, 193, 247, 250, 301, 564
FokI	GGATG	3 cut(s)	34, 307, 428
Fsp4HI	GCNGC	6 cut(s)	63, 193, 247, 250, 301, 564
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	6 cut(s)	63, 193, 247, 250, 301, 564
GsuI	CTGGAG	2 cut(s)	134, 280
HaeIII	GGCC	4 cut(s)	145, 179, 621, 681
HapII	CCGG	1 cut(s)	633
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	16, 444, 500
HinfI	GANTC	1 cut(s)	336
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	2 cut(s)	91, 107
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	3 cut(s)	333, 352, 610
Hpy188III	TCNNGA	6 cut(s)	324, 386, 427, 450, 466, 506
Hpy8I	GTNNAC	1 cut(s)	530
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	4 cut(s)	135, 196, 316, 574
HpyCH4III	ACNGT	3 cut(s)	36, 79, 317
HpyCH4V	TGCA	1 cut(s)	566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 297
HpyF3I	CTNAG	2 cut(s)	119, 358
Hsp92II	CATG	3 cut(s)	16, 444, 500
Kzo9I	GATC	8 cut(s)	122, 271, 282, 326, 452, 508, 583, 672
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	4 cut(s)	59, 115, 200, 257
Lsp1109I	GCAGC	5 cut(s)	179, 236, 258, 287, 550
LweI	GCATC	2 cut(s)	88, 455
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	8 cut(s)	124, 273, 284, 328, 454, 510, 585, 674
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	8 cut(s)	122, 271, 282, 326, 452, 508, 583, 672
MboII	GAAGA	4 cut(s)	160, 182, 185, 407
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	496
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	2 cut(s)	371, 548
MluNI	TGGCCA	1 cut(s)	681
Mox20I	TGGCCA	1 cut(s)	681
MscI	TGGCCA	1 cut(s)	681
MslI	CAYNNNNRTG	2 cut(s)	485, 627
Msp20I	TGGCCA	1 cut(s)	681
MspA1I	CMGCKG	3 cut(s)	200, 249, 300
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	2 cut(s)	634, 657
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	2 cut(s)	225, 297
NciI	CCSGG	1 cut(s)	634
NcoI	CCATGG	2 cut(s)	440, 496
NdeII	GATC	8 cut(s)	122, 271, 282, 326, 452, 508, 583, 672
NheI	GCTAGC	1 cut(s)	8
NlaIII	CATG	3 cut(s)	16, 444, 500
NlaIV	GGNNCC	2 cut(s)	620, 661
NmuCI	GTSAC	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	336
PkrI	GCNGC	6 cut(s)	64, 194, 248, 251, 302, 565
Ple19I	CGATCG	2 cut(s)	274, 285
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	2 cut(s)	620, 661
PspPI	GGNCC	3 cut(s)	211, 530, 619
PsuI	RGATCY	1 cut(s)	326
PvuI	CGATCG	2 cut(s)	274, 285
PvuII	CAGCTG	2 cut(s)	249, 300
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	2 cut(s)	485, 627
SapI	GCTCTTC	1 cut(s)	143
SatI	GCNGC	6 cut(s)	63, 193, 247, 250, 301, 564
Sau3AI	GATC	8 cut(s)	122, 271, 282, 326, 452, 508, 583, 672
Sau96I	GGNCC	3 cut(s)	211, 530, 619
ScrFI	CCNGG	2 cut(s)	634, 657
SduI	GDGCHC	1 cut(s)	496
SetI	ASST	8 cut(s)	94, 120, 251, 302, 410, 465, 535, 591
SfaNI	GCATC	2 cut(s)	88, 455
SfcI	CTRYAG	1 cut(s)	649
SinI	GGWCC	2 cut(s)	211, 530
SmiMI	CAYNNNNRTG	2 cut(s)	485, 627
Sse9I	AATT	2 cut(s)	371, 548
SsiI	CCGC	4 cut(s)	62, 65, 198, 264
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	632, 655
StyI	CCWWGG	2 cut(s)	440, 496
TaaI	ACNGT	3 cut(s)	36, 79, 317
TaqI	TCGA	2 cut(s)	285, 505
TasI	AATT	2 cut(s)	371, 548
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	336
TscAI	CASTG	2 cut(s)	682, 689
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	5 cut(s)	192, 246, 249, 300, 563
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	309, 328, 408
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	682, 689
VpaK11BI	GGWCC	2 cut(s)	211, 530
XapI	RAATTY	1 cut(s)	548
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.