Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Forward (+)

11072267 .. 11080405

Gene Structure 8139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG092700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCATGGAGGAGAGAATCATCATAATCTCCGTCAGCATCACCTTCGTTCTTCAATTTCTGAAGAAATGGAGCTTAACCCAGGTCTCTCAACTCTCATCACCGACGGAGCTTCTGGAATTGAGGAGGCTGAATTGCGAAGACTGAAGGATCAGGTGTTTGTTAGTCCCTGTTCTCACATTGGGGGCCACAAGTATGCTGGGAACTTGATTATCTACAGCCCTGGTGCCGATGGAAAGATCACTGGTCACTGCGATGATGCCTTCACTCGCCTCTACTCTGCCGTCGAGTTCGACATTGAAGCTGCTCTTCAGAAAGCGGAACTTGCTTCAAAAGAGAAAAGTAGGGCATTTGCAGTTGCTCTGGATGCCGTGATTTGCCGGACCAAGGCTCAATTGCTTAAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTTAAAGGGCTTTCATCTGAAGAGTTTGCTGCTCGTAATGAGTTGGTTGTAAGGCTTGTTTACAGAAAAAGACATAACTGGAAGAAACCACAGTTTTGCTTGGGAAAAAAGAAGAAGCTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

187

Amino Acids

20.91

Weight (kDa)

9.45

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suc_Fer-like	PF06999	45 - 79	9e-10	Sucrase/ferredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AciI	CCGC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	156
AcuI	CTGAAG	4 cut(s)	81, 164, 293, 477
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	54, 299, 330
AjnI	CCWGG	2 cut(s)	79, 220
AluBI	AGCT	4 cut(s)	73, 110, 302, 556
AluI	AGCT	4 cut(s)	73, 110, 302, 556
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	156
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	302, 467
AspS9I	GGNCC	2 cut(s)	184, 381
AsuHPI	GGTGA	2 cut(s)	32, 91
AvaII	GGWCC	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	145
BbvI	GCAGC	2 cut(s)	289, 454
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	2 cut(s)	266, 353
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	2 cut(s)	81, 222
BcoDI	GTCTC	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	214
BisI	GCNGC	2 cut(s)	303, 468
BlsI	GCNGC	2 cut(s)	304, 469
Bme1390I	CCNGG	2 cut(s)	81, 222
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	184, 381
BmiI	GGNNCC	3 cut(s)	185, 226, 408
BmrFI	CCNGG	2 cut(s)	81, 222
BmsI	GCATC	3 cut(s)	46, 247, 355
BpiI	GAAGAC	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	79, 220, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	2 cut(s)	247, 521
BseBI	CCWGG	2 cut(s)	81, 222
BseDI	CCNNGG	3 cut(s)	79, 220, 384
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseNI	ACTGG	2 cut(s)	247, 521
BseRI	GAGGAG	2 cut(s)	24, 137
BseXI	GCAGC	2 cut(s)	289, 454
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	148, 237
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	1 cut(s)	186
BspLI	GGNNCC	3 cut(s)	185, 226, 408
BspPI	GGATC	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	247, 521
BssECI	CCNNGG	3 cut(s)	79, 220, 384
BssMI	GATC	2 cut(s)	148, 237
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	81, 222
Bst4CI	ACNGT	1 cut(s)	531
Bst6I	CTCTTC	2 cut(s)	312, 453
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	2 cut(s)	151, 240
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	148, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 365
BstNI	CCWGG	2 cut(s)	81, 222
BstSCI	CCNGG	2 cut(s)	79, 220
BstSFI	CTRYAG	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	289, 454
BstV2I	GAAGAC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	240, 247
Cfr13I	GGNCC	2 cut(s)	184, 381
CviAII	CATG	1 cut(s)	5
DpnI	GATC	2 cut(s)	150, 239
DpnII	GATC	2 cut(s)	148, 237
Eam1104I	CTCTTC	2 cut(s)	312, 453
EarI	CTCTTC	2 cut(s)	312, 453
Eco130I	CCWWGG	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	381
Eco57I	CTGAAG	4 cut(s)	81, 164, 293, 477
EcoRII	CCWGG	2 cut(s)	79, 220
EcoT14I	CCWWGG	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	8
FaiI	YATR	5 cut(s)	6, 24, 195, 513, 560
FalI	AAGNNNNNCTT	4 cut(s)	291, 323, 306, 338
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	1 cut(s)	4
Fnu4HI	GCNGC	2 cut(s)	303, 468
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	303, 468
GluI	GCNGC	2 cut(s)	303, 468
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	379
Hin1II	CATG	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	379
HphI	GGTGA	2 cut(s)	32, 91
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	3 cut(s)	61, 312, 457
Hpy188III	TCNNGA	2 cut(s)	114, 362
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	2 cut(s)	107, 287
HpyAV	CCTTC	4 cut(s)	53, 139, 271, 430
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4V	TGCA	3 cut(s)	4, 353, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 365
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	148, 237
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	70, 107
Lsp1109I	GCAGC	2 cut(s)	289, 454
LweI	GCATC	3 cut(s)	46, 247, 355
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	150, 239
MboI	GATC	2 cut(s)	148, 237
MboII	GAAGA	7 cut(s)	42, 74, 150, 299, 470, 532, 562
MfeI	CAATTG	1 cut(s)	392
MluCI	AATT	4 cut(s)	54, 117, 131, 392
MnlI	CCTC	4 cut(s)	115, 118, 281, 397
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	75, 399, 441
MslI	CAYNNNNRTG	2 cut(s)	192, 252
MspI	CCGG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	81, 222
MunI	CAATTG	1 cut(s)	392
MvaI	CCWGG	2 cut(s)	81, 222
MwoI	GCNNNNNNNGC	2 cut(s)	323, 365
NdeII	GATC	2 cut(s)	148, 237
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	3 cut(s)	185, 226, 408
NmuCI	GTSAC	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	304, 469
Psp6I	CCWGG	2 cut(s)	79, 220
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	2 cut(s)	79, 220
PspN4I	GGNNCC	3 cut(s)	185, 226, 408
PspPI	GGNCC	2 cut(s)	184, 381
RseI	CAYNNNNRTG	2 cut(s)	192, 252
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	75, 399, 441
SatI	GCNGC	2 cut(s)	303, 468
Sau3AI	GATC	2 cut(s)	148, 237
Sau96I	GGNCC	2 cut(s)	184, 381
ScrFI	CCNGG	2 cut(s)	81, 222
SetI	ASST	9 cut(s)	45, 75, 85, 112, 156, 304, 408, 441, 558
SfaNI	GCATC	3 cut(s)	46, 247, 355
SfcI	CTRYAG	1 cut(s)	214
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	2 cut(s)	192, 252
Sse9I	AATT	4 cut(s)	54, 117, 131, 392
SsiI	CCGC	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	79, 220
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	531
TaqI	TCGA	2 cut(s)	285, 291
TasI	AATT	4 cut(s)	54, 117, 131, 392
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	3 cut(s)	75, 399, 441
Tru9I	TTAA	3 cut(s)	75, 399, 441
TscAI	CASTG	2 cut(s)	247, 254
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	2 cut(s)	302, 467
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	441
TspGWI	ACGGA	2 cut(s)	20, 120
TspRI	CASTG	2 cut(s)	247, 254
VpaK11BI	GGWCC	1 cut(s)	381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.