Rroxscaffold_2G00079200

Altered inheritance of mitochondria protein 32-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001205
Physical Location & Seq
Reverse (-)
2238035 .. 2241345
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079200.1

Sequence Viewer

Length: 1035 bp
ATGGCCTCCGACGACCTCTCCACCGTGTCCGCCGCCGCCGATGACGAGAAGTACGGGTTCAAGAGGCCGGAGATGTTCCAGAGCAAGCTCGCCGGCACCGTCGACGCCTACGACCGCCACGTGTTCCTCTGCTACAAGAGCCCCGAGGCCTGGCCCGCCCGCGTTGAAGGCTCCGAGTCCGATCCGCTCCCCAAGCTCCTCTCCTCGGCTTTCAAGGCCCGCAAGAACGATATCTCGATCAAGACTAAGCTGACGGTGTGTGAAGGGCGCGACGGAACTGAATTCGCTGACGGTGATGTGTTGATTTTCCCGGATATGATCAAATACAGGGGCTTGAAAGAGTCAGATGTTGATAGCTTTGTGGATGATGTTATCGTGAATGATAAAGCATGGGCATCTGGAGCACAGGAGGTCTTGACTGGTTCTCACGTTTTTGTGTGTGCCCATGGTAGTCGAGATCGTAGATGTGGTGTTTGTGGACCTGTTCTCATTGAAAAATTCATAGAGGAGGCTGAATTGCGAGGACTGAAGGATCAAGTGTTTGTTAGTCCCTGCTCTCACATTGGGGGCCACAAGTATGCTGGGAACTTGATTATCTACAGCCCTGGTGCAGATGGAAAGATCACTGGTCACTGGTATGGCTATGTTGCTCCTGATGATGTACCGGAATTGCTTGATGAGCATATTGGGAAAGGGAAGATTATAGAACGATTATGGAGAGGCGAAATGGGAGTATCTGCTGAGGAAGCTGACAAGGCTAATGAACACAAGCTCCCAAATGGAGAAAGTGAAAAATTTAAGGACCAGAAACTTCCAATTGGAGAAGGTTCTAAGAAAAGCAAGGAAAATCCCCAAGAAAACGGCACTCATATTCAGAACAGCAATGAGAACTTTGCGGGTTGTTGCCAGGGTGCTAATGGAGTCTCATGCTGCAGAGATGGAAATTTGAAGCAGAACAGTGGAATGGAGGAAAAGAAGCAGAAAGAAACTACAGAAGCTAGCAGTGGAAGAAGGATGCATTGGGATGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

344

Amino Acids

37.79

Weight (kDa)

5.41

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suc_Fer-like PF06999 30 - 241 4.8e-47 Sucrase/ferredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AccBSI CCGCTC 1 cut(s) 187
AccI GTMKAC 1 cut(s) 102
AccII CGCG 2 cut(s) 162, 270
AciI CCGC 9 cut(s) 30, 33, 36, 115, 156, 160, 185, 220, 896
AclWI GGATC 2 cut(s) 176, 540
AcsI RAATTY 4 cut(s) 281, 497, 794, 943
AcuI CTGAAG 1 cut(s) 548
AcvI CACGTG 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 2 cut(s) 53, 663
AfiI CCNNNNNNNGG 2 cut(s) 150, 205
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 6 cut(s) 61, 167, 214, 337, 494, 949
AjnI CCWGG 3 cut(s) 149, 604, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 1003, 1035
AloI GAACNNNNNNTCC 2 cut(s) 756, 788
AluBI AGCT 7 cut(s) 88, 196, 250, 357, 749, 772, 998
AluI AGCT 7 cut(s) 88, 196, 250, 357, 749, 772, 998
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 1 cut(s) 928
AlwI GGATC 2 cut(s) 176, 540
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 6 cut(s) 3, 65, 147, 152, 216, 568
ApeKI GCWGC 1 cut(s) 930
ApoI RAATTY 4 cut(s) 281, 497, 794, 943
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 5 cut(s) 153, 217, 479, 568, 802
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 305
AsuNHI GCTAGC 1 cut(s) 998
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 2 cut(s) 479, 802
BaeGI GKGCMC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 143
BbrPI CACGTG 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 406
BbvCI CCTCAGC 1 cut(s) 741
BbvI GCAGC 1 cut(s) 917
BccI CCATC 2 cut(s) 608, 932
BceAI ACGGC 1 cut(s) 877
BciT130I CCWGG 3 cut(s) 151, 606, 908
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 928
BfaI CTAG 1 cut(s) 999
BfmI CTRYAG 3 cut(s) 598, 931, 990
BisI GCNGC 3 cut(s) 33, 36, 931
BlsI GCNGC 3 cut(s) 34, 37, 932
Bme1390I CCNGG 4 cut(s) 151, 311, 606, 908
Bme18I GGWCC 2 cut(s) 479, 802
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 5 cut(s) 153, 217, 479, 568, 802
BmiI GGNNCC 3 cut(s) 97, 172, 569
BmrFI CCNGG 4 cut(s) 151, 311, 606, 908
BmsI GCATC 3 cut(s) 404, 1005, 1015
BmtI GCTAGC 1 cut(s) 1002
BpmI CTGGAG 1 cut(s) 420
Bpu10I CCTNAGC 1 cut(s) 741
BpuMI CCSGG 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 5 cut(s) 144, 204, 445, 604, 907
BsaWI WCCGGW 1 cut(s) 664
BsaXI ACNNNNNCTCC 3 cut(s) 32, 756, 786
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 205
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 3 cut(s) 424, 631, 638
Bse3DI GCAATG 1 cut(s) 889
BseBI CCWGG 3 cut(s) 151, 606, 908
BseDI CCNNGG 5 cut(s) 144, 204, 445, 604, 907
BseGI GGATG 3 cut(s) 370, 1020, 1030
BseLI CCNNNNNNNGG 2 cut(s) 150, 205
BseMI GCAATG 1 cut(s) 889
BseMII CTCAG 1 cut(s) 732
BseNI ACTGG 3 cut(s) 424, 631, 638
BseRI GAGGAG 3 cut(s) 188, 193, 521
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 1 cut(s) 917
BseYI CCCAGC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 630
Bsh1236I CGCG 2 cut(s) 162, 270
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 6 cut(s) 5, 67, 149, 154, 218, 570
BshNI GGYRCC 1 cut(s) 95
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 4 cut(s) 68, 93, 311, 665
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 2 cut(s) 150, 205
BsmAI GTCTC 1 cut(s) 928
BsmFI GGGAC 1 cut(s) 534
BsnI GGCC 6 cut(s) 5, 67, 149, 154, 218, 570
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 3 cut(s) 143, 406, 445
Bsp143I GATC 6 cut(s) 181, 237, 318, 457, 532, 621
Bsp19I CCATGG 1 cut(s) 445
BspACI CCGC 9 cut(s) 30, 33, 36, 115, 156, 160, 185, 220, 896
BspANI GGCC 6 cut(s) 5, 67, 149, 154, 218, 570
BspCNI CTCAG 1 cut(s) 733
BspFNI CGCG 2 cut(s) 162, 270
BspLI GGNNCC 3 cut(s) 97, 172, 569
BspMAI CTGCAG 1 cut(s) 935
BspOI GCTAGC 1 cut(s) 1002
BspPI GGATC 2 cut(s) 176, 540
BspT107I GGYRCC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 889
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 3 cut(s) 424, 631, 638
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 5 cut(s) 144, 204, 445, 604, 907
BssMI GATC 6 cut(s) 181, 237, 318, 457, 532, 621
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 445
Bst2UI CCWGG 3 cut(s) 151, 606, 908
Bst4CI ACNGT 5 cut(s) 25, 100, 256, 293, 959
BstACI GRCGYC 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 7 cut(s) 86, 90, 94, 156, 160, 220, 1000
BstDEI CTNAG 3 cut(s) 246, 741, 831
BstDSI CCRYGG 1 cut(s) 445
BstF5I GGATG 3 cut(s) 370, 1020, 1030
BstFNI CGCG 2 cut(s) 162, 270
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 6 cut(s) 184, 240, 321, 460, 535, 624
BstMAI GTCTC 1 cut(s) 928
BstMBI GATC 6 cut(s) 181, 237, 318, 457, 532, 621
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 9 cut(s) 138, 155, 168, 193, 215, 401, 679, 746, 755
BstNI CCWGG 3 cut(s) 151, 606, 908
BstSCI CCNGG 4 cut(s) 149, 309, 604, 906
BstSFI CTRYAG 3 cut(s) 598, 931, 990
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 2 cut(s) 162, 270
BstV1I GCAGC 1 cut(s) 917
BsuRI GGCC 6 cut(s) 5, 67, 149, 154, 218, 570
BtgI CCRYGG 1 cut(s) 445
BtsCI GGATG 3 cut(s) 370, 1020, 1030
BtsI GCAGTG 1 cut(s) 1009
BtsIMutI CAGTG 4 cut(s) 624, 631, 964, 1009
Cac8I GCNNGC 7 cut(s) 86, 90, 94, 156, 160, 220, 1000
CfoI GCGC 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 5 cut(s) 153, 217, 479, 568, 802
CseI GACGC 1 cut(s) 113
Csp6I GTAC 2 cut(s) 52, 662
CviAII CATG 3 cut(s) 390, 446, 927
CviQI GTAC 2 cut(s) 52, 662
DdeI CTNAG 3 cut(s) 246, 741, 831
DpnI GATC 6 cut(s) 183, 239, 320, 459, 534, 623
DpnII GATC 6 cut(s) 181, 237, 318, 457, 532, 621
EciI GGCGGA 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 445
Eco147I AGGCCT 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 2 cut(s) 479, 802
Eco57I CTGAAG 1 cut(s) 548
Eco72I CACGTG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 3 cut(s) 149, 604, 906
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 445
EcoT22I ATGCAT 1 cut(s) 1020
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 445
FaeI CATG 3 cut(s) 393, 449, 930
FaqI GGGAC 1 cut(s) 534
FatI CATG 3 cut(s) 389, 445, 926
FauI CCCGC 4 cut(s) 163, 167, 227, 889
FbaI TGATCA 1 cut(s) 318
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 33, 36, 931
FokI GGATG 2 cut(s) 377, 1027
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 33, 36, 931
FspBI CTAG 1 cut(s) 999
GlaI GCGC 1 cut(s) 269
GluI GCNGC 3 cut(s) 33, 36, 931
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 6 cut(s) 5, 67, 149, 154, 218, 570
HapII CCGG 4 cut(s) 68, 93, 311, 665
HgaI GACGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 270
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 3 cut(s) 393, 449, 930
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 3 cut(s) 176, 341, 921
HpaII CCGG 4 cut(s) 68, 93, 311, 665
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 103, 479
Hpy188I TCNGA 5 cut(s) 10, 175, 181, 346, 876
Hpy188III TCNNGA 9 cut(s) 61, 79, 235, 241, 376, 399, 415, 455, 653
Hpy8I GTNNAC 2 cut(s) 103, 479
Hpy99I CGWCG 4 cut(s) 14, 104, 107, 275
HpyAV CCTTC 5 cut(s) 161, 257, 523, 818, 1005
HpyCH4III ACNGT 5 cut(s) 25, 100, 256, 293, 959
HpyCH4IV ACGT 2 cut(s) 120, 429
HpyCH4V TGCA 4 cut(s) 611, 933, 1018, 1028
HpyF10VI GCNNNNNNNGC 9 cut(s) 138, 155, 168, 193, 215, 401, 679, 746, 755
HpyF3I CTNAG 3 cut(s) 246, 741, 831
HpySE526I ACGT 2 cut(s) 120, 429
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 3 cut(s) 393, 449, 930
HspAI GCGC 1 cut(s) 268
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 6 cut(s) 181, 237, 318, 457, 532, 621
LmnI GCTCC 6 cut(s) 176, 192, 201, 401, 655, 777
Lsp1109I GCAGC 1 cut(s) 917
LweI GCATC 3 cut(s) 404, 1005, 1015
MaeI CTAG 1 cut(s) 999
MaeII ACGT 2 cut(s) 120, 429
MaeIII GTNAC 1 cut(s) 629
MalI GATC 6 cut(s) 183, 239, 320, 459, 534, 623
MbiI CCGCTC 1 cut(s) 187
MboI GATC 6 cut(s) 181, 237, 318, 457, 532, 621
MboII GAAGA 2 cut(s) 709, 1020
MfeI CAATTG 1 cut(s) 816
MhlI GDGCHC 3 cut(s) 143, 406, 445
MluCI AATT 7 cut(s) 281, 497, 515, 668, 794, 816, 943
MlyI GAGTC 3 cut(s) 185, 350, 930
MmeI TCCRAC 1 cut(s) 33
Mph1103I ATGCAT 1 cut(s) 1020
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 1 cut(s) 798
MslI CAYNNNNRTG 3 cut(s) 576, 636, 1023
MspI CCGG 4 cut(s) 68, 93, 311, 665
MspR9I CCNGG 4 cut(s) 151, 311, 606, 908
MunI CAATTG 1 cut(s) 816
MvaI CCWGG 3 cut(s) 151, 606, 908
MvnI CGCG 2 cut(s) 162, 270
MwoI GCNNNNNNNGC 9 cut(s) 138, 155, 168, 193, 215, 401, 679, 746, 755
NaeI GCCGGC 1 cut(s) 94
NciI CCSGG 1 cut(s) 311
NcoI CCATGG 1 cut(s) 445
NdeII GATC 6 cut(s) 181, 237, 318, 457, 532, 621
NgoMIV GCCGGC 1 cut(s) 92
NheI GCTAGC 1 cut(s) 998
NlaIII CATG 3 cut(s) 393, 449, 930
NlaIV GGNNCC 3 cut(s) 97, 172, 569
NmeAIII GCCGAG 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 629
NsiI ATGCAT 1 cut(s) 1020
PceI AGGCCT 1 cut(s) 149
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 108, 117
PdiI GCCGGC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 3 cut(s) 34, 37, 932
PleI GAGTC 3 cut(s) 184, 349, 929
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
PpsI GAGTC 3 cut(s) 184, 349, 929
Ppu21I YACGTR 1 cut(s) 121
Psp6I CCWGG 3 cut(s) 149, 604, 906
PspCI CACGTG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 3 cut(s) 149, 604, 906
PspN4I GGNNCC 3 cut(s) 97, 172, 569
PspPI GGNCC 5 cut(s) 153, 217, 479, 568, 802
PstI CTGCAG 1 cut(s) 935
RsaI GTAC 2 cut(s) 53, 663
RsaNI GTAC 2 cut(s) 52, 662
RseI CAYNNNNRTG 3 cut(s) 576, 636, 1023
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 798
SatI GCNGC 3 cut(s) 33, 36, 931
Sau3AI GATC 6 cut(s) 181, 237, 318, 457, 532, 621
Sau96I GGNCC 5 cut(s) 153, 217, 479, 568, 802
SchI GAGTC 3 cut(s) 185, 350, 930
ScrFI CCNGG 4 cut(s) 151, 311, 606, 908
SduI GDGCHC 3 cut(s) 143, 406, 445
SfaNI GCATC 3 cut(s) 404, 1005, 1015
SfcI CTRYAG 3 cut(s) 598, 931, 990
SgrDI CGTCGACG 1 cut(s) 101
SinI GGWCC 2 cut(s) 479, 802
SmiMI CAYNNNNRTG 3 cut(s) 576, 636, 1023
Sse9I AATT 7 cut(s) 281, 497, 515, 668, 794, 816, 943
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 9 cut(s) 30, 33, 36, 115, 156, 160, 185, 220, 896
SspMI CTAG 1 cut(s) 999
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 4 cut(s) 149, 309, 604, 906
StyI CCWWGG 1 cut(s) 445
TaaI ACNGT 5 cut(s) 25, 100, 256, 293, 959
TaiI ACGT 2 cut(s) 123, 432
TaqI TCGA 3 cut(s) 102, 236, 454
TasI AATT 7 cut(s) 281, 497, 515, 668, 794, 816, 943
TauI GCSGC 2 cut(s) 35, 38
Tru1I TTAA 1 cut(s) 798
Tru9I TTAA 1 cut(s) 798
TscAI CASTG 4 cut(s) 631, 638, 964, 1009
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 1 cut(s) 930
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 2 cut(s) 490, 777
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 4 cut(s) 631, 638, 964, 1009
VpaK11BI GGWCC 2 cut(s) 479, 802
XapI RAATTY 4 cut(s) 281, 497, 794, 943
XcmI CCANNNNNNNNNTGG 2 cut(s) 578, 914
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 999
Zsp2I ATGCAT 1 cut(s) 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.