Rorug01G0116100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001205
Physical Location & Seq
Reverse (-)
20425789 .. 20427926
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0116100.1

Sequence Viewer

Length: 1314 bp
ATGGATGATTATCCAGACCTCCGGCAGCTGATGACCTCAAGAACACAGCAGCTCGTACAATTCCCAGACCCGTTTTCAGTACGACCTTTCAATAATTTTCACCCCAATAGTATCGTTGTAGGTCATGAGGTTAATGCTCATGAATTTTTTGAGTTTGGTTCTGCTGCTTCTGCTGCTGCTGCTCCTCCTAATTTTAGCACAATTATTAGTAATAGTATTGTTGCTGGTAATCTGAATGGTTCTGCTGCTGCTTCATCTGTTGGTTCGTTGTATGGGTTAGAGTTAATGAATCAGCATGCGTGGAATATTAATGGGAATGATGGATCAGGCAATAACAGCAGATGGCCAAGACAAGAAACTCTTACTCTTCTTGAGATTAGATCCAGTCTCGATTCCAAGTTCAAGGAGACTAATCAGAAAGGTCCATTGTGGGATGAAGTTTCCAGGATAATGAGTGAGGAACATGGATATCATAGGAGTGGGAAGAAATGCAAAGAGAAGTTTGAGAATCTATACAAGTACTACAAGAAAACCAAAGAAGGCAAAGCTGGGAGACAAGATGGGAAGCACTATAGGTTCTTTCGTCAGCTTGAAGCAATATATGGTGACCAAAGTACTACCAATCTCTTGTCCTCAGCTTCGGATCAAACCCATCTAACTGGTACATTAAACCCTACTCTTCTTTATAATCACACCACTGCTACTATTAACCAAGAAAATCAAGAAGTTAAGCTTGGTGCGGAGAGCCTTAGTTTCTCCAACAATTCAACTGACTTAGAAACCTCCAGCTCGGAGAACAATGGAGATGATCTTTCAAATTCAGCTAATGGTCACTGTAAAAATGAGAACCAAATTAGGTGTTCAAGGCGTATGAAGAAGACCTGGAAGACACAGGTGGAGGAGTTTGTGAATTCCCAAATGATGAAGGTGATGAAGGCTCAAGAGGGTTGGATGGAGAAGATGTTGAAGACTATTGAAGGTAGAGAAGAGGAGAGGTTGGCTAAAGAAGAAGAGTGGAGGAAGCGCGAGGCAGAGCGGTTTAATCAACAAGTACATGAATTCTGGGCTAACGAGAGAGCTTGGGTGGAAACTCGAGATGCTTCAATAATGGAGGCTCTCAGCCAAATTCGAGGAATAGGAACTAACAGTTACAACACCAAGGCCAAGGATGAGAGCATGGAACTGCAGCTGACAGATGGAGGTCTATTACCTTCAAGTTCTAATTATATGAATATGAACTCTACCTCCTTTTACATTCCGACGAATGAAGGAGAAAATTTGTGGAACAGGTATGGTGGGAAGCTCAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

437

Amino Acids

49.68

Weight (kDa)

6.06

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 113 - 200 1.1e-22 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
AccBSI CCGCTC 1 cut(s) 1036
AccII CGCG 1 cut(s) 1026
AciI CCGC 2 cut(s) 740, 1036
AclWI GGATC 3 cut(s) 331, 375, 651
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 6 cut(s) 143, 817, 910, 1058, 1125, 1276
AfaI GTAC 6 cut(s) 57, 81, 521, 616, 664, 1053
AjnI CCWGG 2 cut(s) 443, 881
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
AloI GAACNNNNNNTCC 2 cut(s) 1229, 1261
Alw26I GTCTC 3 cut(s) 392, 401, 547
AlwI GGATC 3 cut(s) 331, 375, 651
Ama87I CYCGRG 1 cut(s) 1092
AoxI GGCC 2 cut(s) 344, 1161
ApeKI GCWGC 9 cut(s) 25, 49, 164, 173, 176, 179, 245, 248, 1186
ApoI RAATTY 6 cut(s) 143, 817, 910, 1058, 1125, 1276
AseI ATTAAT 1 cut(s) 309
AspLEI GCGC 1 cut(s) 1026
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 3 cut(s) 92, 617, 940
AvaI CYCGRG 1 cut(s) 1092
AvaII GGWCC 1 cut(s) 422
BalI TGGCCA 1 cut(s) 346
BbsI GAAGAC 3 cut(s) 884, 893, 974
BbvCI CCTCAGC 1 cut(s) 634
BbvI GCAGC 9 cut(s) 37, 61, 151, 160, 163, 166, 232, 235, 1198
BccI CCATC 6 cut(s) 314, 336, 554, 660, 946, 1190
BciT130I CCWGG 2 cut(s) 445, 883
BcoDI GTCTC 3 cut(s) 392, 401, 547
BfmI CTRYAG 2 cut(s) 571, 1184
BisI GCNGC 9 cut(s) 26, 50, 165, 174, 177, 180, 246, 249, 1187
BlpI GCTNAGC 1 cut(s) 1304
BlsI GCNGC 9 cut(s) 27, 51, 166, 175, 178, 181, 247, 250, 1188
BmcAI AGTACT 2 cut(s) 521, 616
Bme1390I CCNGG 2 cut(s) 445, 883
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 1092
BmgT120I GGNCC 1 cut(s) 422
BmrFI CCNGG 2 cut(s) 445, 883
BmsI GCATC 1 cut(s) 1087
BpiI GAAGAC 3 cut(s) 884, 893, 974
BpmI CTGGAG 1 cut(s) 769
Bpu10I CCTNAGC 1 cut(s) 634
Bpu1102I GCTNAGC 1 cut(s) 1304
BpuEI CTTGAG 3 cut(s) 22, 392, 924
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 1158, 1164
BsaXI ACNNNNNCTCC 4 cut(s) 947, 977, 1229, 1259
Bse1I ACTGG 2 cut(s) 384, 664
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 2 cut(s) 445, 883
BseDI CCNNGG 2 cut(s) 1158, 1164
BseGI GGATG 4 cut(s) 10, 439, 957, 1174
BseJI GATNNNNATC 1 cut(s) 9
BseMII CTCAG 2 cut(s) 648, 1132
BseNI ACTGG 2 cut(s) 384, 664
BseRI GAGGAG 3 cut(s) 174, 914, 1004
BseXI GCAGC 9 cut(s) 37, 61, 151, 160, 163, 166, 232, 235, 1198
BseYI CCCAGC 1 cut(s) 548
Bsh1236I CGCG 1 cut(s) 1026
BshFI GGCC 2 cut(s) 346, 1163
BsiHKCI CYCGRG 1 cut(s) 1092
BsiSI CCGG 1 cut(s) 22
BsmAI GTCTC 3 cut(s) 392, 401, 547
BsnI GGCC 2 cut(s) 346, 1163
BsoBI CYCGRG 1 cut(s) 1092
Bsp143I GATC 4 cut(s) 323, 380, 643, 808
Bsp1720I GCTNAGC 1 cut(s) 1304
BspACI CCGC 2 cut(s) 740, 1036
BspANI GGCC 2 cut(s) 346, 1163
BspCNI CTCAG 2 cut(s) 647, 1131
BspFNI CGCG 1 cut(s) 1026
BspHI TCATGA 2 cut(s) 124, 139
BspMAI CTGCAG 1 cut(s) 1188
BspPI GGATC 3 cut(s) 331, 375, 651
BsrBI CCGCTC 1 cut(s) 1036
BsrI ACTGG 2 cut(s) 384, 664
BssECI CCNNGG 2 cut(s) 1158, 1164
BssMI GATC 4 cut(s) 323, 380, 643, 808
BssT1I CCWWGG 2 cut(s) 1158, 1164
Bst2UI CCWGG 2 cut(s) 445, 883
Bst4CI ACNGT 2 cut(s) 836, 1148
Bst6I CTCTTC 4 cut(s) 372, 684, 981, 1005
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 5 cut(s) 634, 749, 775, 1118, 1304
BstEII GGTNACC 1 cut(s) 605
BstF5I GGATG 4 cut(s) 10, 439, 957, 1174
BstFNI CGCG 1 cut(s) 1026
BstHHI GCGC 1 cut(s) 1026
BstKTI GATC 4 cut(s) 326, 383, 646, 811
BstMAI GTCTC 3 cut(s) 392, 401, 547
BstMBI GATC 4 cut(s) 323, 380, 643, 808
BstMWI GCNNNNNNNGC 4 cut(s) 170, 173, 179, 336
BstNI CCWGG 2 cut(s) 445, 883
BstNSI RCATGY 1 cut(s) 299
BstPI GGTNACC 1 cut(s) 605
BstSCI CCNGG 2 cut(s) 443, 881
BstSFI CTRYAG 2 cut(s) 571, 1184
BstUI CGCG 1 cut(s) 1026
BstV1I GCAGC 9 cut(s) 37, 61, 151, 160, 163, 166, 232, 235, 1198
BstV2I GAAGAC 3 cut(s) 884, 893, 974
BstX2I RGATCY 1 cut(s) 380
BstXI CCANNNNNNTGG 1 cut(s) 659
BstYI RGATCY 1 cut(s) 380
BsuRI GGCC 2 cut(s) 346, 1163
BtsCI GGATG 4 cut(s) 10, 439, 957, 1174
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 2 cut(s) 696, 832
Cac8I GCNNGC 1 cut(s) 297
CciI TCATGA 2 cut(s) 124, 139
CfoI GCGC 1 cut(s) 1026
Cfr13I GGNCC 1 cut(s) 422
Csp6I GTAC 6 cut(s) 56, 80, 520, 615, 663, 1052
CviAII CATG 6 cut(s) 125, 140, 296, 464, 1055, 1177
CviQI GTAC 6 cut(s) 56, 80, 520, 615, 663, 1052
DdeI CTNAG 5 cut(s) 634, 749, 775, 1118, 1304
DpnI GATC 4 cut(s) 325, 382, 645, 810
DpnII GATC 4 cut(s) 323, 380, 643, 808
EaeI YGGCCR 1 cut(s) 344
Eam1104I CTCTTC 4 cut(s) 372, 684, 981, 1005
EarI CTCTTC 4 cut(s) 372, 684, 981, 1005
Eco130I CCWWGG 2 cut(s) 1158, 1164
Eco32I GATATC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 422
Eco88I CYCGRG 1 cut(s) 1092
Eco91I GGTNACC 1 cut(s) 605
EcoO65I GGTNACC 1 cut(s) 605
EcoRI GAATTC 2 cut(s) 910, 1058
EcoRII CCWGG 2 cut(s) 443, 881
EcoRV GATATC 1 cut(s) 470
EcoT14I CCWWGG 2 cut(s) 1158, 1164
ErhI CCWWGG 2 cut(s) 1158, 1164
FaeI CATG 6 cut(s) 128, 143, 299, 467, 1058, 1180
FalI AAGNNNNNCTT 4 cut(s) 345, 377, 717, 749
FatI CATG 6 cut(s) 124, 139, 295, 463, 1054, 1176
Fnu4HI GCNGC 9 cut(s) 26, 50, 165, 174, 177, 180, 246, 249, 1187
FokI GGATG 4 cut(s) 17, 446, 964, 1181
Fsp4HI GCNGC 9 cut(s) 26, 50, 165, 174, 177, 180, 246, 249, 1187
GlaI GCGC 1 cut(s) 1025
GluI GCNGC 9 cut(s) 26, 50, 165, 174, 177, 180, 246, 249, 1187
GsaI CCCAGC 1 cut(s) 552
GsuI CTGGAG 1 cut(s) 769
HaeIII GGCC 2 cut(s) 346, 1163
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 1026
Hin1II CATG 6 cut(s) 128, 143, 299, 467, 1058, 1180
Hin6I GCGC 1 cut(s) 1024
HinP1I GCGC 1 cut(s) 1024
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 3 cut(s) 289, 392, 508
HpaII CCGG 1 cut(s) 22
HphI GGTGA 3 cut(s) 92, 617, 940
Hpy188I TCNGA 5 cut(s) 234, 417, 643, 793, 1260
Hpy188III TCNNGA 9 cut(s) 14, 39, 125, 140, 371, 389, 722, 941, 1094
Hpy99I CGWCG 1 cut(s) 1264
HpyAV CCTTC 6 cut(s) 533, 919, 928, 971, 1221, 1262
HpyCH4III ACNGT 2 cut(s) 836, 1148
HpyCH4V TGCA 2 cut(s) 492, 1186
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 173, 179, 336
HpyF3I CTNAG 5 cut(s) 634, 749, 775, 1118, 1304
Hsp92II CATG 6 cut(s) 128, 143, 299, 467, 1058, 1180
HspAI GCGC 1 cut(s) 1024
Kzo9I GATC 4 cut(s) 323, 380, 643, 808
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 9 cut(s) 37, 61, 151, 160, 163, 166, 232, 235, 1198
LweI GCATC 1 cut(s) 1087
MaeIII GTNAC 3 cut(s) 605, 830, 1148
MalI GATC 4 cut(s) 325, 382, 645, 810
MbiI CCGCTC 1 cut(s) 1036
MboI GATC 4 cut(s) 323, 380, 643, 808
MflI RGATCY 1 cut(s) 380
MlsI TGGCCA 1 cut(s) 346
MluNI TGGCCA 1 cut(s) 346
MmeI TCCRAC 3 cut(s) 783, 929, 1283
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 7 cut(s) 132, 284, 309, 668, 708, 729, 1041
MslI CAYNNNNRTG 1 cut(s) 477
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 2 cut(s) 28, 1189
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 2 cut(s) 445, 883
MvaI CCWGG 2 cut(s) 445, 883
MvnI CGCG 1 cut(s) 1026
MwoI GCNNNNNNNGC 4 cut(s) 170, 173, 179, 336
NdeII GATC 4 cut(s) 323, 380, 643, 808
NlaIII CATG 6 cut(s) 128, 143, 299, 467, 1058, 1180
NmuCI GTSAC 2 cut(s) 605, 830
NspI RCATGY 1 cut(s) 299
PaeI GCATGC 1 cut(s) 299
PaeR7I CTCGAG 1 cut(s) 1092
PagI TCATGA 2 cut(s) 124, 139
PfeI GAWTC 3 cut(s) 289, 392, 508
PfoI TCCNGGA 1 cut(s) 443
PkrI GCNGC 9 cut(s) 27, 51, 166, 175, 178, 181, 247, 250, 1188
PshBI ATTAAT 1 cut(s) 309
PsiI TTATAA 1 cut(s) 687
Psp6I CCWGG 2 cut(s) 443, 881
PspEI GGTNACC 1 cut(s) 605
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 2 cut(s) 443, 881
PspPI GGNCC 1 cut(s) 422
PstI CTGCAG 1 cut(s) 1188
PsuI RGATCY 1 cut(s) 380
PvuII CAGCTG 2 cut(s) 28, 1189
RsaI GTAC 6 cut(s) 57, 81, 521, 616, 664, 1053
RsaNI GTAC 6 cut(s) 56, 80, 520, 615, 663, 1052
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 7 cut(s) 132, 284, 309, 668, 708, 729, 1041
SatI GCNGC 9 cut(s) 26, 50, 165, 174, 177, 180, 246, 249, 1187
Sau3AI GATC 4 cut(s) 323, 380, 643, 808
Sau96I GGNCC 1 cut(s) 422
ScaI AGTACT 2 cut(s) 521, 616
ScrFI CCNGG 2 cut(s) 445, 883
SfaNI GCATC 1 cut(s) 1087
SfcI CTRYAG 2 cut(s) 571, 1184
Sfr274I CTCGAG 1 cut(s) 1092
SinI GGWCC 1 cut(s) 422
SlaI CTCGAG 1 cut(s) 1092
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 4 cut(s) 37, 371, 939, 1092
SmoI CTYRAG 4 cut(s) 37, 371, 939, 1092
SphI GCATGC 1 cut(s) 299
SsiI CCGC 2 cut(s) 740, 1036
SspI AATATT 1 cut(s) 307
StyD4I CCNGG 2 cut(s) 443, 881
StyI CCWWGG 2 cut(s) 1158, 1164
TaaI ACNGT 2 cut(s) 836, 1148
TaqI TCGA 3 cut(s) 390, 1093, 1129
TatI WGTACW 3 cut(s) 519, 614, 1051
TfiI GAWTC 3 cut(s) 289, 392, 508
Tru1I TTAA 7 cut(s) 132, 284, 309, 668, 708, 729, 1041
Tru9I TTAA 7 cut(s) 132, 284, 309, 668, 708, 729, 1041
TscAI CASTG 2 cut(s) 703, 839
TseFI GTSAC 2 cut(s) 605, 830
TseI GCWGC 9 cut(s) 25, 49, 164, 173, 176, 179, 245, 248, 1186
Tsp45I GTSAC 2 cut(s) 605, 830
TspRI CASTG 2 cut(s) 703, 839
VpaK11BI GGWCC 1 cut(s) 422
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 6 cut(s) 143, 817, 910, 1058, 1125, 1276
XceI RCATGY 1 cut(s) 299
XhoI CTCGAG 1 cut(s) 1092
ZrmI AGTACT 2 cut(s) 521, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.