RLG00000013592

Altered inheritance of mitochondria protein 32-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001205
Physical Location & Seq
Forward (+)
33757549 .. 33759572
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013592

Sequence Viewer

Length: 390 bp
ATGGCGAAAAACGACGTGTCCTTGTCAGTGGGCGAGTTCTTGAAGTGGTGCCAACAATCCGGCGAGTGTTCGACGATCAATGCAATGTATCATTCACTTCCGATGCGGTATAAGAGAGTTGTGGATCTTCATAACATGCTTGGAGGAGAGAATCATCATCATCTCCGTCAGCATCACCTTCGTTCTTCAATTTCTGAAGAAATGGAGTTGAAACCAGGTCTCTCAACTCTCGTCACCGACGGAGCTTCTGGAATTGAGGAGGCTGAATTGCGAGGACTGAAGGATCAGGTGTTTGTTAGTCCCTGTTCTAACATTGGGGGCCACAAGTATGCTGGGAACTTGATTATCTACAGCCCTGGTGCCGATGGAAAGATCACTGGTCACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

130

Amino Acids

14.26

Weight (kDa)

6.48

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suc_Fer-like PF06999 83 - 124 2.2e-07 Sucrase/ferredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 48, 359
AciI CCGC 1 cut(s) 106
AclWI GGATC 2 cut(s) 132, 291
AcuI CTGAAG 2 cut(s) 216, 299
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 3 cut(s) 43, 189, 211
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 2 cut(s) 214, 355
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 2 cut(s) 132, 291
AoxI GGCC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 167, 226
BanI GGYRCC 2 cut(s) 48, 359
BccI CCATC 1 cut(s) 359
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 2 cut(s) 216, 357
BcoDI GTCTC 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 349
Bme1390I CCNGG 2 cut(s) 216, 357
BmgBI CACGTC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 3 cut(s) 50, 320, 361
BmrFI CCNGG 2 cut(s) 216, 357
BmsI GCATC 2 cut(s) 93, 181
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 382, 389
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 2 cut(s) 216, 357
BseDI CCNNGG 1 cut(s) 355
BseMI GCAATG 1 cut(s) 90
BseNI ACTGG 2 cut(s) 382, 389
BseRI GAGGAG 2 cut(s) 159, 272
BseYI CCCAGC 1 cut(s) 332
BshFI GGCC 1 cut(s) 321
BshNI GGYRCC 2 cut(s) 48, 359
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 1 cut(s) 321
Bso31I GGTCTC 1 cut(s) 224
Bsp143I GATC 4 cut(s) 75, 124, 283, 372
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 321
BspLI GGNNCC 3 cut(s) 50, 320, 361
BspPI GGATC 2 cut(s) 132, 291
BspT107I GGYRCC 2 cut(s) 48, 359
BspTNI GGTCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 90
BsrI ACTGG 2 cut(s) 382, 389
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 4 cut(s) 75, 124, 283, 372
Bst2UI CCWGG 2 cut(s) 216, 357
BstKTI GATC 4 cut(s) 78, 127, 286, 375
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 4 cut(s) 75, 124, 283, 372
BstNI CCWGG 2 cut(s) 216, 357
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 214, 355
BstSFI CTRYAG 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 1 cut(s) 321
BtrI CACGTC 1 cut(s) 16
BtsIMutI CAGTG 3 cut(s) 33, 375, 382
Cfr13I GGNCC 1 cut(s) 319
CsiI ACCWGGT 1 cut(s) 214
CviAII CATG 1 cut(s) 136
CviJI RGCY 4 cut(s) 245, 263, 321, 354
CviKI_1 RGCY 4 cut(s) 245, 263, 321, 354
DpnI GATC 4 cut(s) 77, 126, 285, 374
DpnII GATC 4 cut(s) 75, 124, 283, 372
Eco31I GGTCTC 1 cut(s) 224
Eco57I CTGAAG 2 cut(s) 216, 299
EcoRII CCWGG 2 cut(s) 214, 355
FaeI CATG 1 cut(s) 139
FaiI YATR 4 cut(s) 111, 132, 137, 330
FaqI GGGAC 1 cut(s) 285
FatI CATG 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 336
HaeIII GGCC 1 cut(s) 321
HapII CCGG 1 cut(s) 60
Hin1II CATG 1 cut(s) 139
HinfI GANTC 1 cut(s) 151
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 167, 226
Hpy188I TCNGA 2 cut(s) 102, 196
Hpy188III TCNNGA 2 cut(s) 40, 249
Hpy99I CGWCG 3 cut(s) 17, 76, 242
HpyAV CCTTC 2 cut(s) 188, 274
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 139
Kzo9I GATC 4 cut(s) 75, 124, 283, 372
LmnI GCTCC 1 cut(s) 242
LweI GCATC 2 cut(s) 93, 181
MabI ACCWGGT 1 cut(s) 214
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 232, 380
MalI GATC 4 cut(s) 77, 126, 285, 374
MboI GATC 4 cut(s) 75, 124, 283, 372
MboII GAAGA 3 cut(s) 119, 177, 209
MflI RGATCY 1 cut(s) 124
MluCI AATT 3 cut(s) 189, 252, 266
MnlI CCTC 4 cut(s) 137, 250, 253, 266
MslI CAYNNNNRTG 1 cut(s) 327
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 216, 357
MvaI CCWGG 2 cut(s) 216, 357
NdeII GATC 4 cut(s) 75, 124, 283, 372
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 3 cut(s) 50, 320, 361
NmuCI GTSAC 2 cut(s) 232, 380
NspI RCATGY 1 cut(s) 139
PfeI GAWTC 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 214, 355
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 2 cut(s) 214, 355
PspN4I GGNNCC 3 cut(s) 50, 320, 361
PspPI GGNCC 1 cut(s) 319
PsuI RGATCY 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 327
Sau3AI GATC 4 cut(s) 75, 124, 283, 372
Sau96I GGNCC 1 cut(s) 319
ScrFI CCNGG 2 cut(s) 216, 357
SetI ASST 5 cut(s) 18, 180, 220, 247, 291
SexAI ACCWGGT 1 cut(s) 214
SfaNI GCATC 2 cut(s) 93, 181
SfcI CTRYAG 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 327
Sse9I AATT 3 cut(s) 189, 252, 266
SsiI CCGC 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 214, 355
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 71
TasI AATT 3 cut(s) 189, 252, 266
TfiI GAWTC 1 cut(s) 151
TscAI CASTG 3 cut(s) 33, 382, 389
TseFI GTSAC 2 cut(s) 232, 380
Tsp45I GTSAC 2 cut(s) 232, 380
TspDTI ATGAA 1 cut(s) 119
TspGWI ACGGA 2 cut(s) 155, 255
TspRI CASTG 3 cut(s) 33, 382, 389
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.