RchiOBHm_Chr1g0344721

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001205
Physical Location & Seq
Forward (+)
37046382 .. 37048631
2250 bp
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UTR
Exon/CDS
Intron
PRQ57112

Sequence Viewer

Length: 306 bp
ATGTATCATTCACTTTCGATGCGGTATAAGAGAGTTGTGGATCTTCATAACATGCTTGGAGGAGAGAATCATCATCATCTTCGTCAGCATCACCTTCGTTCTTCAATTTCTGAAGAAATGGAGCTGAAACCAGGTCTCTCAGCTCTCGTCACCAGCGGAGCTTTTGGAATTAAAAGGTTGAAATTGGAATTGCAACATTGTCGGTTAAAATGTGGGGGTACTCAGCAAGAGCGTGCTGCCAGGCTTTTTATGCTTAAATTCACCCATGTAGAGAAGATTCCAAAGAAGTTGCTGGCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

101

Amino Acids

11.71

Weight (kDa)

10.2

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDE2_2C PF13297 54 - 100 1.8e-16 Replication stress response SDE2 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 22, 156
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 1 cut(s) 220
AgsI TTSAA 2 cut(s) 105, 181
AjnI CCWGG 2 cut(s) 130, 239
AluBI AGCT 3 cut(s) 124, 143, 161
AluI AGCT 3 cut(s) 124, 143, 161
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 257
AsuHPI GGTGA 3 cut(s) 83, 142, 253
BbvI GCAGC 1 cut(s) 223
BcgI CGANNNNNNTGC 4 cut(s) 77, 111, 182, 216
BciT130I CCWGG 2 cut(s) 132, 241
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 2 cut(s) 132, 241
BmrFI CCNGG 2 cut(s) 132, 241
BmsI GCATC 2 cut(s) 9, 97
BsaI GGTCTC 1 cut(s) 140
BseBI CCWGG 2 cut(s) 132, 241
BseMII CTCAG 2 cut(s) 153, 236
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 2 cut(s) 22, 156
BspCNI CTCAG 2 cut(s) 152, 235
BspPI GGATC 1 cut(s) 48
BspTNI GGTCTC 1 cut(s) 140
BssMI GATC 1 cut(s) 40
Bst2UI CCWGG 2 cut(s) 132, 241
BstC8I GCNNGC 2 cut(s) 234, 294
BstDEI CTNAG 2 cut(s) 139, 222
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNI CCWGG 2 cut(s) 132, 241
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 2 cut(s) 130, 239
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 234, 294
CsiI ACCWGGT 1 cut(s) 130
Csp6I GTAC 1 cut(s) 219
CviAII CATG 2 cut(s) 52, 266
CviJI RGCY 4 cut(s) 124, 143, 161, 244
CviKI_1 RGCY 4 cut(s) 124, 143, 161, 244
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 2 cut(s) 139, 222
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 130, 239
FaeI CATG 2 cut(s) 55, 269
FaiI YATR 5 cut(s) 27, 48, 53, 251, 267
FatI CATG 2 cut(s) 51, 265
Fnu4HI GCNGC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 55, 269
HinfI GANTC 2 cut(s) 67, 277
HphI GGTGA 3 cut(s) 83, 142, 253
Hpy188I TCNGA 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 2 cut(s) 139, 222
Hsp92II CATG 2 cut(s) 55, 269
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 2 cut(s) 121, 158
LpnPI CCDG 6 cut(s) 117, 144, 166, 226, 253, 278
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 2 cut(s) 9, 97
MabI ACCWGGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 5 cut(s) 35, 71, 93, 125, 286
MflI RGATCY 1 cut(s) 40
MluCI AATT 5 cut(s) 105, 168, 182, 188, 257
MnlI CCTC 1 cut(s) 53
MseI TTAA 3 cut(s) 171, 206, 255
MspA1I CMGCKG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 132, 241
MvaI CCWGG 2 cut(s) 132, 241
MwoI GCNNNNNNNGC 1 cut(s) 250
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 55, 269
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 1 cut(s) 55
PfeI GAWTC 2 cut(s) 67, 277
PkrI GCNGC 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 130, 239
PspGI CCWGG 2 cut(s) 130, 239
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 171, 206, 255
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 132, 241
SetI ASST 6 cut(s) 96, 126, 136, 145, 163, 179
SexAI ACCWGGT 1 cut(s) 130
SfaNI GCATC 2 cut(s) 9, 97
Sse9I AATT 5 cut(s) 105, 168, 182, 188, 257
SsiI CCGC 2 cut(s) 22, 156
StyD4I CCNGG 2 cut(s) 130, 239
TaqI TCGA 1 cut(s) 17
TasI AATT 5 cut(s) 105, 168, 182, 188, 257
TfiI GAWTC 2 cut(s) 67, 277
Tru1I TTAA 3 cut(s) 171, 206, 255
Tru9I TTAA 3 cut(s) 171, 206, 255
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 35
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.