Rroxscaffold_5G00353780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001205
Physical Location & Seq
Reverse (-)
31738049 .. 31741276
3228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00353780.1

Sequence Viewer

Length: 216 bp
ATGTATCATTCACTTCCGATGCGGTATAAGAGAGTTGTGGATCTTCATAACATGCTTGGAGGAGAGAATCATCATCATCTTCGTCAGCATCACCTTCGTTCTTCAATTTCTGAAGAAATGGAGCTGAAACCAGGTATCTCAGCTCTCGTCACCGGCGGAGCTTCTGTTATTATACACCTAGCTTTCTGGAGGCTTAATGGTATACTTCCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.12

Weight (kDa)

9.52

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 202
AciI CCGC 2 cut(s) 22, 156
AclWI GGATC 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 132
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 4 cut(s) 124, 143, 161, 182
AluI AGCT 4 cut(s) 124, 143, 161, 182
AlwI GGATC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 83, 142
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 132
BfaI CTAG 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 9, 97
BpmI CTGGAG 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bse118I RCCGGY 1 cut(s) 152
BseBI CCWGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 153
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 2 cut(s) 22, 156
BspCNI CTCAG 1 cut(s) 152
BspPI GGATC 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssMI GATC 1 cut(s) 40
BssNAI GTATAC 1 cut(s) 203
Bst1107I GTATAC 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 139
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BstZ17I GTATAC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 152
CsiI ACCWGGT 1 cut(s) 130
CviAII CATG 1 cut(s) 52
CviJI RGCY 5 cut(s) 124, 143, 161, 182, 193
CviKI_1 RGCY 5 cut(s) 124, 143, 161, 182, 193
DdeI CTNAG 1 cut(s) 139
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EciI GGCGGA 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 55
FaiI YATR 5 cut(s) 27, 48, 53, 173, 203
FatI CATG 1 cut(s) 51
FblI GTMKAC 1 cut(s) 202
FspBI CTAG 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 208
HapII CCGG 1 cut(s) 153
Hin1II CATG 1 cut(s) 55
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 153
HphI GGTGA 2 cut(s) 83, 142
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 18, 112
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 139
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 2 cut(s) 121, 158
LpnPI CCDG 4 cut(s) 117, 144, 166, 172
LweI GCATC 2 cut(s) 9, 97
MabI ACCWGGT 1 cut(s) 130
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 4 cut(s) 35, 71, 93, 125
MflI RGATCY 1 cut(s) 40
MluCI AATT 1 cut(s) 105
MnlI CCTC 2 cut(s) 53, 183
MseI TTAA 1 cut(s) 195
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
NdeII GATC 1 cut(s) 40
NlaIII CATG 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 1 cut(s) 55
PfeI GAWTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PsuI RGATCY 1 cut(s) 40
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 132
SetI ASST 7 cut(s) 96, 126, 136, 145, 163, 180, 184
SexAI ACCWGGT 1 cut(s) 130
SfaNI GCATC 2 cut(s) 9, 97
SgeI CNNG 8 cut(s) 64, 68, 143, 144, 158, 165, 191, 199
SgrAI CRCCGGYG 1 cut(s) 152
Sse9I AATT 1 cut(s) 105
SsiI CCGC 2 cut(s) 22, 156
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 130
TasI AATT 1 cut(s) 105
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 35
XceI RCATGY 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 202
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.