Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Forward (+)

89343156 .. 89346949

Gene Structure 3794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG669800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAGCCTTTTAGTTTAATTATCACTGACATGAAATTGAATTTTGTTCCCAACAGAGGCGAAATGGGAGTATCTGCTGAGGAAGCTGAAAAGGTTAATGAACACAAGCTTCCAAATGGAGAAAGTGAAAAATTTAAGGACCAGAAGCTTCCAATTGGAGAAGGTTCTAAGAAAAGCAAGGAAAATCCCCAAGAAAATGGCACTCAGATTCAGAACAGCAATGATAACTTTGCAGGTTGTTGCCAGGGTGCTAATGGAGTCTCATGCTGCAGAGATGGAAGTTTGGAGCAGAACAGTGGAATCGAGGAAAAGAAGCAGAAAGAAACTACGGAAGCTAGCAGTGGCAAGAAGGATGCAGTGGGATGCAAACTGACAAGCTACATGGGAAAGTGGGAGCAAAGTGATATCCTTGCAGCTGTCGCGGTGGTGGGAGCAGTGGCAACTGTGGGTGTGGCGGTCTATAGCTTTTACAGAAGGTCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

161

Amino Acids

17.33

Weight (kDa)

5.95

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	224
AccII	CGCG	1 cut(s)	422
AciI	CCGC	2 cut(s)	422, 455
AcsI	RAATTY	2 cut(s)	40, 131
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	7 cut(s)	86, 109, 148, 335, 378, 416, 465
AluI	AGCT	7 cut(s)	86, 109, 148, 335, 378, 416, 465
Alw26I	GTCTC	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	267, 413
ApoI	RAATTY	2 cut(s)	40, 131
AspS9I	GGNCC	1 cut(s)	139
AsuNHI	GCTAGC	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	139
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	254, 425
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	2 cut(s)	268, 460
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	268, 414
BlsI	GCNGC	2 cut(s)	269, 415
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	2 cut(s)	343, 353
BmtI	GCTAGC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	358, 368
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	69, 218
BseXI	GCAGC	2 cut(s)	254, 425
Bsh1236I	CGCG	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	422, 455
BspCNI	CTCAG	2 cut(s)	70, 217
BspFNI	CGCG	1 cut(s)	422
BspMAI	CTGCAG	1 cut(s)	272
BspMI	ACCTGC	1 cut(s)	224
BspOI	GCTAGC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	296, 445
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	3 cut(s)	78, 168, 204
BstF5I	GGATG	2 cut(s)	358, 368
BstFNI	CGCG	1 cut(s)	422
BstMAI	GTCTC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 419
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	2 cut(s)	268, 460
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	2 cut(s)	254, 425
BstXI	CCANNNNNNTGG	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	358, 368
BtsI	GCAGTG	3 cut(s)	346, 363, 441
BtsIMutI	CAGTG	5 cut(s)	24, 301, 346, 363, 441
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	139
CviAII	CATG	3 cut(s)	31, 264, 382
CviJI	RGCY	8 cut(s)	7, 86, 109, 148, 335, 378, 416, 465
CviKI_1	RGCY	8 cut(s)	7, 86, 109, 148, 335, 378, 416, 465
DdeI	CTNAG	3 cut(s)	78, 168, 204
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	406
FaeI	CATG	3 cut(s)	34, 267, 385
FaiI	YATR	4 cut(s)	32, 265, 383, 462
FatI	CATG	3 cut(s)	30, 263, 381
Fnu4HI	GCNGC	2 cut(s)	268, 414
FokI	GGATG	2 cut(s)	365, 375
Fsp4HI	GCNGC	2 cut(s)	268, 414
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	2 cut(s)	268, 414
Hin1II	CATG	3 cut(s)	34, 267, 385
HindIII	AAGCTT	2 cut(s)	107, 146
HinfI	GANTC	3 cut(s)	208, 258, 300
Hpy188I	TCNGA	2 cut(s)	207, 213
HpyAV	CCTTC	3 cut(s)	155, 343, 468
HpyCH4III	ACNGT	2 cut(s)	296, 445
HpyCH4V	TGCA	5 cut(s)	233, 270, 356, 366, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 419
HpyF3I	CTNAG	3 cut(s)	78, 168, 204
Hsp92II	CATG	3 cut(s)	34, 267, 385
LmnI	GCTCC	3 cut(s)	286, 394, 431
LpnPI	CCDG	5 cut(s)	155, 219, 230, 257, 465
Lsp1109I	GCAGC	2 cut(s)	254, 425
LweI	GCATC	2 cut(s)	343, 353
MaeI	CTAG	1 cut(s)	336
MfeI	CAATTG	1 cut(s)	153
MluCI	AATT	5 cut(s)	18, 35, 40, 131, 153
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	3 cut(s)	50, 73, 298
MseI	TTAA	3 cut(s)	17, 96, 135
MslI	CAYNNNNRTG	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	83, 419
NheI	GCTAGC	1 cut(s)	335
NlaIII	CATG	3 cut(s)	34, 267, 385
PfeI	GAWTC	2 cut(s)	208, 300
PkrI	GCNGC	2 cut(s)	269, 415
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	17, 96, 135
SatI	GCNGC	2 cut(s)	268, 414
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	245
SfaNI	GCATC	2 cut(s)	343, 353
SfcI	CTRYAG	2 cut(s)	268, 460
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	5 cut(s)	18, 35, 40, 131, 153
SsiI	CCGC	2 cut(s)	422, 455
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	296, 445
TaqI	TCGA	1 cut(s)	303
TasI	AATT	5 cut(s)	18, 35, 40, 131, 153
TfiI	GAWTC	2 cut(s)	208, 300
Tru1I	TTAA	3 cut(s)	17, 96, 135
Tru9I	TTAA	3 cut(s)	17, 96, 135
TscAI	CASTG	5 cut(s)	31, 301, 346, 363, 441
TseI	GCWGC	2 cut(s)	267, 413
TspDTI	ATGAA	3 cut(s)	17, 47, 114
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	5 cut(s)	31, 301, 346, 363, 441
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	2 cut(s)	40, 131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.