Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Forward (+)

68825872 .. 68827534

Gene Structure 1663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52041

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATCAAATACCGGGGCTTGAAAGAGTCAGATGTTGATAGCTTTGTGGATGATGTTATCGTGAATGATAAACCATGGGCATCTGGAGCACAGGAGGTCTTGACTGGTTCTCACATTTTTGTGTGTGCCCATGGTAGTCGAGATCGTAGATGTGGTGTTTGTGGACCTGTTCTCATTGATAAATTCACAGAGGAGGCTGCATTGCGAGGACTGAAGGATCAGCCCTGGTGCCGATGGAAAGATCACTGGCCACTGACATTGGACATAGTTGTAGAGAACCCCGAAAAATTCGGAGTTGTGGCCCTAGCAGCTGGCTCAAACGTCACTCTTCTTGTCGATCAGGTGAAGAGGTTCAAACCCAAACTAGTTGCAGTTAGAAATGAATCATTAGTTAATGAACTTAAAGAGGCACTATCTGGTCTAGAAGACAAGCCTGAGATCATTCCTGGGGAGCAAGGAGTCATTGAGGTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

158

Amino Acids

17.48

Weight (kDa)

5.25

Isoelectric Point (pI)

25.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suc_Fer-like	PF06999	3 - 67	4.2e-11	Sucrase/ferredoxin-like
DXP_reductoisom	PF02670	86 - 158	2.9e-15	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	182, 287
AcuI	CTGAAG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	22, 355
AhlI	ACTAGT	1 cut(s)	364
AjnI	CCWGG	2 cut(s)	224, 445
AluBI	AGCT	2 cut(s)	42, 311
AluI	AGCT	2 cut(s)	42, 311
Alw21I	GWGCWC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	3 cut(s)	248, 300, 471
ApeKI	GCWGC	2 cut(s)	197, 308
ApoI	RAATTY	2 cut(s)	182, 287
Asp700I	GAANNNNTTC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	164, 301
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	184, 320
BccI	CCATC	1 cut(s)	228
BciT130I	CCWGG	2 cut(s)	226, 447
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	14
BcuI	ACTAGT	1 cut(s)	364
BfaI	CTAG	4 cut(s)	305, 365, 422, 475
BisI	GCNGC	2 cut(s)	198, 309
BlsI	GCNGC	2 cut(s)	199, 310
Bme1390I	CCNGG	3 cut(s)	14, 226, 447
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	164, 301
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	3 cut(s)	14, 226, 447
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	14
BsaJI	CCNNGG	5 cut(s)	13, 74, 130, 224, 446
Bse1I	ACTGG	2 cut(s)	109, 251
Bse3DI	GCAATG	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	226, 447
BseDI	CCNNGG	5 cut(s)	13, 74, 130, 224, 446
BseGI	GGATG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	109, 251
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	184, 320
BshFI	GGCC	3 cut(s)	250, 302, 473
BshNI	GGYRCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	13
BsnI	GGCC	3 cut(s)	250, 302, 473
Bsp1286I	GDGCHC	2 cut(s)	91, 130
Bsp143I	GATC	6 cut(s)	3, 142, 217, 241, 337, 438
Bsp19I	CCATGG	2 cut(s)	74, 130
BspANI	GGCC	3 cut(s)	250, 302, 473
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	109, 251
BssECI	CCNNGG	5 cut(s)	13, 74, 130, 224, 446
BssMI	GATC	6 cut(s)	3, 142, 217, 241, 337, 438
BssT1I	CCWWGG	2 cut(s)	74, 130
Bst2UI	CCWGG	2 cut(s)	226, 447
Bst6I	CTCTTC	2 cut(s)	333, 341
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	2 cut(s)	74, 130
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	6 cut(s)	6, 145, 220, 244, 340, 441
BstMBI	GATC	6 cut(s)	3, 142, 217, 241, 337, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 308
BstNI	CCWGG	2 cut(s)	226, 447
BstSCI	CCNGG	3 cut(s)	12, 224, 445
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	184, 320
BstV2I	GAAGAC	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	250, 302, 473
BtgI	CCRYGG	2 cut(s)	74, 130
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	244, 251
Cac8I	GCNNGC	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	164, 301
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviAII	CATG	2 cut(s)	75, 131
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	6 cut(s)	5, 144, 219, 243, 339, 440
DpnII	GATC	6 cut(s)	3, 142, 217, 241, 337, 438
EaeI	YGGCCR	1 cut(s)	248
Eam1104I	CTCTTC	2 cut(s)	333, 341
EarI	CTCTTC	2 cut(s)	333, 341
Eco130I	CCWWGG	2 cut(s)	74, 130
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	224, 445
EcoT14I	CCWWGG	2 cut(s)	74, 130
ErhI	CCWWGG	2 cut(s)	74, 130
FaeI	CATG	2 cut(s)	78, 134
FaiI	YATR	3 cut(s)	76, 132, 266
FatI	CATG	2 cut(s)	74, 130
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	198, 309
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	198, 309
FspBI	CTAG	4 cut(s)	305, 365, 422, 475
GluI	GCNGC	2 cut(s)	198, 309
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	250, 302, 473
HapII	CCGG	1 cut(s)	13
Hin1II	CATG	2 cut(s)	78, 134
HinfI	GANTC	3 cut(s)	26, 383, 459
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	31, 293
Hpy188III	TCNNGA	5 cut(s)	61, 84, 100, 140, 422
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	200, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 308
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	78, 134
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 142, 217, 241, 337, 438
LmnI	GCTCC	2 cut(s)	86, 451
Lsp1109I	GCAGC	2 cut(s)	184, 320
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	4 cut(s)	305, 365, 422, 475
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	6 cut(s)	5, 144, 219, 243, 339, 440
MboI	GATC	6 cut(s)	3, 142, 217, 241, 337, 438
MboII	GAAGA	3 cut(s)	320, 358, 437
MhlI	GDGCHC	2 cut(s)	91, 130
MlsI	TGGCCA	1 cut(s)	250
MluCI	AATT	2 cut(s)	182, 287
MluNI	TGGCCA	1 cut(s)	250
MlyI	GAGTC	2 cut(s)	35, 468
MnlI	CCTC	7 cut(s)	88, 184, 187, 200, 342, 400, 460
Mox20I	TGGCCA	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	250
MseI	TTAA	2 cut(s)	393, 402
MslI	CAYNNNNRTG	2 cut(s)	119, 467
Msp20I	TGGCCA	1 cut(s)	250
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	3 cut(s)	14, 226, 447
MvaI	CCWGG	2 cut(s)	226, 447
MwoI	GCNNNNNNNGC	2 cut(s)	86, 308
NciI	CCSGG	1 cut(s)	14
NcoI	CCATGG	2 cut(s)	74, 130
NdeII	GATC	6 cut(s)	3, 142, 217, 241, 337, 438
NlaIII	CATG	2 cut(s)	78, 134
NlaIV	GGNNCC	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	199, 310
PleI	GAGTC	2 cut(s)	34, 467
PpsI	GAGTC	2 cut(s)	34, 467
Psp6I	CCWGG	2 cut(s)	224, 445
PspGI	CCWGG	2 cut(s)	224, 445
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	2 cut(s)	164, 301
PvuII	CAGCTG	1 cut(s)	311
RseI	CAYNNNNRTG	2 cut(s)	119, 467
SaqAI	TTAA	2 cut(s)	393, 402
SatI	GCNGC	2 cut(s)	198, 309
Sau3AI	GATC	6 cut(s)	3, 142, 217, 241, 337, 438
Sau96I	GGNCC	2 cut(s)	164, 301
SchI	GAGTC	2 cut(s)	35, 468
ScrFI	CCNGG	3 cut(s)	14, 226, 447
SduI	GDGCHC	2 cut(s)	91, 130
SetI	ASST	8 cut(s)	44, 99, 169, 313, 324, 345, 353, 471
SfaNI	GCATC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	119, 467
SpeI	ACTAGT	1 cut(s)	364
Sse9I	AATT	2 cut(s)	182, 287
SspMI	CTAG	4 cut(s)	305, 365, 422, 475
StyD4I	CCNGG	3 cut(s)	12, 224, 445
StyI	CCWWGG	2 cut(s)	74, 130
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	139, 336
TasI	AATT	2 cut(s)	182, 287
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	2 cut(s)	393, 402
Tru9I	TTAA	2 cut(s)	393, 402
TscAI	CASTG	2 cut(s)	251, 258
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	197, 308
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	396, 411
TspRI	CASTG	2 cut(s)	251, 258
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	2 cut(s)	182, 287
XbaI	TCTAGA	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	4 cut(s)	305, 365, 422, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.