Rw7G017880

Altered inheritance of mitochondria protein 32-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001205
Physical Location & Seq
Reverse (-)
19026506 .. 19030045
3540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017880.1

Sequence Viewer

Length: 720 bp
ATGATAATTAAAGTCACCTCTTCACAACCTACCACTAGAGTTACATTTAATTACAAAAACTGCCACCACAGCCCTCTCTCCCTCTCTCCCTCTTCCTCAAGCGCGTATGAACCCTTGTCAACTGCGCCTCCGAGGCCGTCGCCTTCTGCTGCTCCGCTGACAACTTGGTCCTCTGCCAAGAGTGCGACTGGGACGCCTGTGGCAGCTGCTCCGTCTCCACCGCACACGATCGCACCCCGATCGAGGGCTTCTCCGGCTACCCCTTCTCGTACAGTTCATCCAGATCTCGGAGATTCATTCCGGTTTCCGATGGCTCAGCCTCTCGCAATCAATTTCACCGCTCTCAAATTCGATCTGGTTTTCTTCTCTCAATTTGCTGACGGCGATGTGTTGATTTTCCCGGATATGATCAAATACCGGGGCTTGAAAGAGTCAGATGTTGATAGCTTTGTGGATGATGTTATCGTGAATGATAAACCATGGGCATCTGGAGCACAGGAGGTCTTGACTGATCGTAGATGTGGTGTTTGTGGACCTGTTCTCATTGATAAATTCACAGAGGAGGCTGAATTGCGAGGACTGAAGGATCAGGTGTTTGTTAGTCCTTGTTCTGACATTGGGGGCCACAAGTATGCTGGGAACTTGATTATCTACAGCCCTTGTGCCGATGGAAAGATCACTGGCCACTGCCTGGAAAGATTATGGGAATTGCATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

239

Amino Acids

25.89

Weight (kDa)

6.37

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suc_Fer-like PF06999 126 - 222 2.4e-17 Sucrase/ferredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AccB7I CCANNNNNTGG 1 cut(s) 691
AccBSI CCGCTC 1 cut(s) 341
AccII CGCG 1 cut(s) 104
AciI CCGC 3 cut(s) 155, 221, 339
AclWI GGATC 1 cut(s) 594
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 2 cut(s) 347, 551
AcuI CTGAAG 1 cut(s) 602
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 4 cut(s) 243, 244, 287, 691
AgsI TTSAA 1 cut(s) 427
AjnI CCWGG 1 cut(s) 690
AluBI AGCT 2 cut(s) 206, 447
AluI AGCT 2 cut(s) 206, 447
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 594
AoxI GGCC 3 cut(s) 134, 622, 682
ApeKI GCWGC 3 cut(s) 149, 203, 206
ApoI RAATTY 2 cut(s) 347, 551
AspLEI GCGC 2 cut(s) 104, 127
AspS9I GGNCC 3 cut(s) 168, 533, 622
AsuC2I CCSGG 2 cut(s) 401, 419
AsuHPI GGTGA 2 cut(s) 7, 328
AvaII GGWCC 2 cut(s) 168, 533
BalI TGGCCA 1 cut(s) 684
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 3 cut(s) 136, 193, 215
BccI CCATC 2 cut(s) 304, 662
BceAI ACGGC 2 cut(s) 121, 397
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 1 cut(s) 692
BclI TGATCA 1 cut(s) 408
BcnI CCSGG 2 cut(s) 401, 419
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 652
BglI GCCNNNNNGGC 1 cut(s) 133
BglII AGATCT 1 cut(s) 283
BisI GCNGC 3 cut(s) 150, 204, 207
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 3 cut(s) 151, 205, 208
Bme1390I CCNGG 3 cut(s) 401, 419, 692
Bme18I GGWCC 2 cut(s) 168, 533
BmgT120I GGNCC 3 cut(s) 168, 533, 622
BmiI GGNNCC 1 cut(s) 623
BmrFI CCNGG 3 cut(s) 401, 419, 692
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 494
BmuI ACTGGG 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 235, 267
BpmI CTGGAG 1 cut(s) 510
Bpu1102I GCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 82
BpuMI CCSGG 2 cut(s) 401, 419
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 131, 418, 479
BsaWI WCCGGW 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 4 cut(s) 243, 244, 287, 691
Bse1I ACTGG 2 cut(s) 193, 685
BseBI CCWGG 1 cut(s) 692
BseDI CCNNGG 3 cut(s) 131, 418, 479
BseGI GGATG 2 cut(s) 277, 460
BseLI CCNNNNNNNGG 4 cut(s) 243, 244, 287, 691
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 193, 685
BseRI GAGGAG 1 cut(s) 575
BseXI GCAGC 3 cut(s) 136, 193, 215
BseYI CCCAGC 1 cut(s) 635
Bsh1236I CGCG 1 cut(s) 104
Bsh1285I CGRYCG 2 cut(s) 231, 242
BshFI GGCC 3 cut(s) 136, 624, 684
BsiEI CGRYCG 2 cut(s) 231, 242
BsiHKAI GWGCWC 1 cut(s) 496
BsiSI CCGG 4 cut(s) 254, 301, 401, 418
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 4 cut(s) 243, 244, 287, 691
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 3 cut(s) 136, 624, 684
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 8 cut(s) 228, 239, 283, 352, 408, 511, 586, 675
Bsp1720I GCTNAGC 1 cut(s) 315
Bsp19I CCATGG 1 cut(s) 479
BspACI CCGC 3 cut(s) 155, 221, 339
BspANI GGCC 3 cut(s) 136, 624, 684
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 623
BspPI GGATC 1 cut(s) 594
BsrBI CCGCTC 1 cut(s) 341
BsrI ACTGG 2 cut(s) 193, 685
BssECI CCNNGG 3 cut(s) 131, 418, 479
BssMI GATC 8 cut(s) 228, 239, 283, 352, 408, 511, 586, 675
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 479
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 2 cut(s) 25, 97
BstACI GRCGYC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 479
BstF5I GGATG 2 cut(s) 277, 460
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 2 cut(s) 104, 127
BstKTI GATC 8 cut(s) 231, 242, 286, 355, 411, 514, 589, 678
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 8 cut(s) 228, 239, 283, 352, 408, 511, 586, 675
BstMCI CGRYCG 2 cut(s) 231, 242
BstMWI GCNNNNNNNGC 5 cut(s) 69, 133, 182, 254, 491
BstNI CCWGG 1 cut(s) 692
BstSCI CCNGG 3 cut(s) 399, 417, 690
BstSFI CTRYAG 1 cut(s) 652
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 3 cut(s) 136, 193, 215
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 3 cut(s) 136, 624, 684
BtgI CCRYGG 1 cut(s) 479
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 2 cut(s) 277, 460
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 2 cut(s) 678, 685
CfoI GCGC 2 cut(s) 104, 127
Cfr13I GGNCC 3 cut(s) 168, 533, 622
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 270
CviAII CATG 1 cut(s) 480
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 315
DpnI GATC 8 cut(s) 230, 241, 285, 354, 410, 513, 588, 677
DpnII GATC 8 cut(s) 228, 239, 283, 352, 408, 511, 586, 675
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 2 cut(s) 25, 97
EarI CTCTTC 2 cut(s) 25, 97
Eco130I CCWWGG 1 cut(s) 479
Eco47I GGWCC 2 cut(s) 168, 533
Eco57I CTGAAG 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 690
EcoT14I CCWWGG 1 cut(s) 479
ErhI CCWWGG 1 cut(s) 479
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 1 cut(s) 483
FaiI YATR 5 cut(s) 108, 407, 481, 633, 703
FaqI GGGAC 1 cut(s) 205
FatI CATG 1 cut(s) 479
FbaI TGATCA 1 cut(s) 408
Fnu4HI GCNGC 3 cut(s) 150, 204, 207
FokI GGATG 2 cut(s) 264, 467
Fsp4HI GCNGC 3 cut(s) 150, 204, 207
FspBI CTAG 1 cut(s) 36
GlaI GCGC 2 cut(s) 103, 126
GluI GCNGC 3 cut(s) 150, 204, 207
GsaI CCCAGC 1 cut(s) 639
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 3 cut(s) 136, 624, 684
HapII CCGG 4 cut(s) 254, 301, 401, 418
HgaI GACGC 1 cut(s) 202
HhaI GCGC 2 cut(s) 104, 127
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 1 cut(s) 483
Hin6I GCGC 2 cut(s) 102, 125
HinP1I GCGC 2 cut(s) 102, 125
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 2 cut(s) 293, 431
HpaII CCGG 4 cut(s) 254, 301, 401, 418
HphI GGTGA 2 cut(s) 7, 328
Hpy166II GTNNAC 2 cut(s) 120, 533
Hpy188I TCNGA 5 cut(s) 132, 290, 309, 436, 613
Hpy188III TCNNGA 4 cut(s) 281, 466, 489, 505
Hpy8I GTNNAC 2 cut(s) 120, 533
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 3 cut(s) 153, 273, 577
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 712
HpyF10VI GCNNNNNNNGC 5 cut(s) 69, 133, 182, 254, 491
HpyF3I CTNAG 1 cut(s) 315
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 1 cut(s) 483
HspAI GCGC 2 cut(s) 102, 125
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 8 cut(s) 228, 239, 283, 352, 408, 511, 586, 675
LmnI GCTCC 3 cut(s) 157, 214, 491
Lsp1109I GCAGC 3 cut(s) 136, 193, 215
LweI GCATC 1 cut(s) 494
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 13, 40
MalI GATC 8 cut(s) 230, 241, 285, 354, 410, 513, 588, 677
MbiI CCGCTC 1 cut(s) 341
MboI GATC 8 cut(s) 228, 239, 283, 352, 408, 511, 586, 675
MboII GAAGA 3 cut(s) 12, 84, 355
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 496
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 8 cut(s) 6, 49, 331, 347, 371, 551, 569, 707
MluNI TGGCCA 1 cut(s) 684
MlyI GAGTC 1 cut(s) 440
Mox20I TGGCCA 1 cut(s) 684
MscI TGGCCA 1 cut(s) 684
MseI TTAA 2 cut(s) 9, 48
MslI CAYNNNNRTG 1 cut(s) 630
Msp20I TGGCCA 1 cut(s) 684
MspA1I CMGCKG 2 cut(s) 157, 206
MspI CCGG 4 cut(s) 254, 301, 401, 418
MspR9I CCNGG 3 cut(s) 401, 419, 692
MvaI CCWGG 1 cut(s) 692
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 5 cut(s) 69, 133, 182, 254, 491
NciI CCSGG 2 cut(s) 401, 419
NcoI CCATGG 1 cut(s) 479
NdeII GATC 8 cut(s) 228, 239, 283, 352, 408, 511, 586, 675
NlaIII CATG 1 cut(s) 483
NlaIV GGNNCC 1 cut(s) 623
NmuCI GTSAC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 293
PflMI CCANNNNNTGG 1 cut(s) 691
PfoI TCCNGGA 1 cut(s) 399
PkrI GCNGC 3 cut(s) 151, 205, 208
Ple19I CGATCG 2 cut(s) 231, 242
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 690
PspFI CCCAGC 1 cut(s) 635
PspGI CCWGG 1 cut(s) 690
PspN4I GGNNCC 1 cut(s) 623
PspPI GGNCC 3 cut(s) 168, 533, 622
PsuI RGATCY 1 cut(s) 283
PvuI CGATCG 2 cut(s) 231, 242
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 630
SaqAI TTAA 2 cut(s) 9, 48
SatI GCNGC 3 cut(s) 150, 204, 207
Sau3AI GATC 8 cut(s) 228, 239, 283, 352, 408, 511, 586, 675
Sau96I GGNCC 3 cut(s) 168, 533, 622
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 3 cut(s) 401, 419, 692
SduI GDGCHC 1 cut(s) 496
SetI ASST 7 cut(s) 20, 31, 208, 449, 504, 538, 594
SfaNI GCATC 1 cut(s) 494
SfcI CTRYAG 1 cut(s) 652
SinI GGWCC 2 cut(s) 168, 533
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 8 cut(s) 6, 49, 331, 347, 371, 551, 569, 707
SsiI CCGC 3 cut(s) 155, 221, 339
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 399, 417, 690
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 2 cut(s) 242, 351
TasI AATT 8 cut(s) 6, 49, 331, 347, 371, 551, 569, 707
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 9, 48
Tru9I TTAA 2 cut(s) 9, 48
TscAI CASTG 2 cut(s) 685, 692
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 3 cut(s) 149, 203, 206
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 3 cut(s) 123, 266, 285
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 2 cut(s) 685, 692
Van91I CCANNNNNTGG 1 cut(s) 691
VpaK11BI GGWCC 2 cut(s) 168, 533
XapI RAATTY 2 cut(s) 347, 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.