Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Reverse (-)

1555741 .. 1556323

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1025700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGGAAACTTGATTATCTACATCCCAGGTTCAGATGGAAGTACAACAAGCTATTGGTATGGCTACGTCACTCCTGATGATGTGCCAGAATTTGATCAGCATATTGGGAAGGGAGAGATTATAGAACGACTTTGGAGGTTTGGTCCAAATCGGAGCATCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

55

Amino Acids

6.18

Weight (kDa)

4.65

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suc_Fer-like	PF06999	2 - 46	2.1e-06	Sucrase/ferredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	143
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	21
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	42
CviJI	RGCY	2 cut(s)	51, 63
CviKI_1	RGCY	2 cut(s)	51, 63
CviQI	GTAC	1 cut(s)	42
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	25
FaiI	YATR	3 cut(s)	60, 102, 122
FbaI	TGATCA	1 cut(s)	94
FokI	GGATG	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	34, 153
Hpy188III	TCNNGA	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	4 cut(s)	12, 39, 87, 99
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MluCI	AATT	1 cut(s)	89
MnlI	CCTC	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	4 cut(s)	31, 53, 69, 140
SgeI	CNNG	6 cut(s)	22, 38, 39, 60, 86, 98
SinI	GGWCC	1 cut(s)	143
Sse9I	AATT	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	25
TaiI	ACGT	1 cut(s)	69
TasI	AATT	1 cut(s)	89
TatI	WGTACW	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.