Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001205

Physical Location & Seq

Genomic Coordinates Reverse (-)

1505623 .. 1507240

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1025100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTCAAGGAAAAACTTGCCGGTACCGTCAACGCCTACGACCGCCACGTCTTCCTCTGCTACCTAAGTTCTTCGCCTCCGCTCTCAAAGCTCGCAAGAACGACTTCGCCGTTAAGTTCTGGTACTTTGCTGACAGTAATTGAAGGACGCGAAGGAACTGAGTTTTCCGACGGTGATGTGTTGATTTTCCCACAAATGATCAAATACAGGGGCCTGAAAGAGTCGGATGTGGAAAGCTTTGTTGATGATGTCCTTGTGAATGACAAACCATGGGCTTCCGGAGTGCAAGAGGCGTTGACTGGCTCCCATGTATTTGTATGTGCACATGGTAGTCGAGATAAAAGATGTGGAGTTTGTCGACCTGTCCTCATTGATAAGTTCAAAGAGGAGGCTGAGCTGCGACGATTAACAAATCAGGTATTTGTTACTGCTTGCTCTCACATTGGAGACCACAAGTATGCTGGAAACTTGATTGTCTACAGCCCACGTTCAGATGGAAGCATAACAGGCCATTGGTATGGCTACGTCACTACTGAGGATGTGCCGGAATTGCTTGATCAGCATATTGGGAAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

193

Amino Acids

21.24

Weight (kDa)

5.96

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suc_Fer-like	PF06999	6 - 191	6.1e-36	Sucrase/ferredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27570 AT3G27570 AT5G40510 AT5G40510
fragaria_vesca	FvH4_6g51500
malus_domestica	MD00G1190200.v1.1 MD09G1024100.v1.1 MD09G1024300.v1.1 MD09G1024500.v1.1 MD09G1024800.v1.1 MD09G1025000.v1.1 MD09G1025100.v1.1 MD09G1025500.v1.1 MD09G1025700.v1.1 MD09G1025900.v1.1 MD09G1026400.v1.1 MD09G1026600.v1.1 MD09G1044600.v1.1 MD09G1045300.v1.1 MD17G1026300.v1.1
prunus_persica	Prupe.3G292400_v2.0.a1 Prupe.3G292400_v2.0.a1
pyrus_communis	pycom111g02020 pycom111g02070 pycom17g02140
rosa_chinensis	RchiOBHm_Chr1g0344721 RchiOBHm_Chr2g0151191 RchiOBHm_Chr2g0173141 RchiOBHm_Chr6g0279861
rosa_laevigata	RLG00000013592 RLG00000022162
rosa_multiflora	Rmu_sc0000248.1_g000001 Rmu_sc0002070.1_g000061 Rmu_sc0002298.1_g000011 Rmu_sc0003981.1_g000001 Rmu_sc0005168.1_g000003 Rmu_sc0020537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079200 Rroxscaffold_5G00353780
rosa_rugosa	Rorug01G0115800 Rorug01G0115900 Rorug01G0116000 Rorug01G0116100 Rorug01G0116200 Rorug01G0281400 Rorug02G0238200 Rorug02G0347400 Rorug02G0565600.1 Rorug05G0221000
rosa_samantha	Rh2AG645700 Rh2BG656400 Rh2CG621500 Rh2DG669800 Rh6DG092700
rosa_wichuraiana	Rw2G053030 Rw7G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
Acc65I	GGTACC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	82
AccI	GTMKAC	2 cut(s)	358, 477
AccII	CGCG	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	278
AciI	CCGC	2 cut(s)	43, 80
AfaI	GTAC	2 cut(s)	25, 124
AgsI	TTSAA	3 cut(s)	7, 143, 382
AjiI	CACGTC	1 cut(s)	49
AluBI	AGCT	3 cut(s)	91, 237, 397
AluI	AGCT	3 cut(s)	91, 237, 397
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	441
Alw44I	GTGCAC	1 cut(s)	321
Aor13HI	TCCGGA	1 cut(s)	278
AoxI	GGCC	2 cut(s)	211, 508
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	397
Asp700I	GAANNNNTTC	1 cut(s)	103
Asp718I	GGTACC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	384
BccI	CCATC	1 cut(s)	488
BceAI	ACGGC	1 cut(s)	94
BclI	TGATCA	2 cut(s)	198, 556
BcoDI	GTCTC	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	478
BisI	GCNGC	1 cut(s)	398
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	399
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	3 cut(s)	25, 212, 304
BpiI	GAAGAC	1 cut(s)	43
Bpu1102I	GCTNAGC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	278
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	304
BseAI	TCCGGA	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	232, 544
BseMII	CTCAG	3 cut(s)	150, 384, 525
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	401
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	150
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	213, 510
BshNI	GGYRCC	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	3 cut(s)	21, 279, 545
BsmAI	GTCTC	1 cut(s)	441
BsnI	GGCC	2 cut(s)	213, 510
Bso31I	GGTCTC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp13I	TCCGGA	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	198, 556
Bsp1720I	GCTNAGC	1 cut(s)	393
Bsp19I	CCATGG	1 cut(s)	269
BspACI	CCGC	2 cut(s)	43, 80
BspANI	GGCC	2 cut(s)	213, 510
BspCNI	CTCAG	3 cut(s)	151, 385, 526
BspEI	TCCGGA	1 cut(s)	278
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	3 cut(s)	25, 212, 304
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	441
BsrBI	CCGCTC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	2 cut(s)	198, 556
BssT1I	CCWWGG	1 cut(s)	269
Bst4CI	ACNGT	3 cut(s)	28, 136, 173
BstC8I	GCNNGC	2 cut(s)	93, 433
BstDEI	CTNAG	4 cut(s)	65, 159, 393, 534
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	232, 544
BstFNI	CGCG	1 cut(s)	150
BstKTI	GATC	2 cut(s)	201, 559
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	2 cut(s)	198, 556
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 507, 550, 559
BstSFI	CTRYAG	1 cut(s)	478
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	384
BstV2I	GAAGAC	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	213, 510
BtgI	CCRYGG	1 cut(s)	269
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	232, 544
Cac8I	GCNNGC	2 cut(s)	93, 433
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	24, 123
CviAII	CATG	3 cut(s)	270, 308, 326
CviQI	GTAC	2 cut(s)	24, 123
DdeI	CTNAG	4 cut(s)	65, 159, 393, 534
DpnI	GATC	2 cut(s)	200, 558
DpnII	GATC	2 cut(s)	198, 556
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	3 cut(s)	273, 311, 329
FaiI	YATR	8 cut(s)	271, 309, 319, 327, 459, 503, 519, 564
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FatI	CATG	3 cut(s)	269, 307, 325
FbaI	TGATCA	2 cut(s)	198, 556
FblI	GTMKAC	2 cut(s)	358, 477
Fnu4HI	GCNGC	1 cut(s)	398
FokI	GGATG	2 cut(s)	239, 551
Fsp4HI	GCNGC	1 cut(s)	398
GluI	GCNGC	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	213, 510
HapII	CCGG	3 cut(s)	21, 279, 545
HgaI	GACGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	273, 311, 329
HincII	GTYRAC	3 cut(s)	31, 297, 359
HindII	GTYRAC	3 cut(s)	31, 297, 359
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	3 cut(s)	21, 279, 545
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	5 cut(s)	31, 297, 323, 359, 478
Hpy188I	TCNGA	3 cut(s)	169, 226, 493
Hpy188III	TCNNGA	2 cut(s)	279, 335
Hpy8I	GTNNAC	5 cut(s)	31, 297, 323, 359, 478
Hpy99I	CGWCG	2 cut(s)	173, 405
HpyAV	CCTTC	3 cut(s)	137, 146, 565
HpyCH4III	ACNGT	3 cut(s)	28, 136, 173
HpyCH4IV	ACGT	3 cut(s)	48, 487, 525
HpyCH4V	TGCA	2 cut(s)	286, 323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 507, 550, 559
HpyF3I	CTNAG	4 cut(s)	65, 159, 393, 534
HpySE526I	ACGT	3 cut(s)	48, 487, 525
Hsp92II	CATG	3 cut(s)	273, 311, 329
Kpn2I	TCCGGA	1 cut(s)	278
KpnI	GGTACC	1 cut(s)	27
Ksp22I	TGATCA	2 cut(s)	198, 556
Kzo9I	GATC	2 cut(s)	198, 556
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	1 cut(s)	384
MaeII	ACGT	3 cut(s)	48, 487, 525
MaeIII	GTNAC	2 cut(s)	424, 526
MalI	GATC	2 cut(s)	200, 558
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	2 cut(s)	198, 556
MboII	GAAGA	2 cut(s)	43, 63
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	2 cut(s)	138, 548
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	192, 204
MnlI	CCTC	7 cut(s)	65, 87, 283, 377, 379, 382, 529
MroI	TCCGGA	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	2 cut(s)	113, 407
MslI	CAYNNNNRTG	2 cut(s)	456, 516
MspI	CCGG	3 cut(s)	21, 279, 545
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	4 cut(s)	88, 507, 550, 559
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	198, 556
NlaIII	CATG	3 cut(s)	273, 311, 329
NlaIV	GGNNCC	3 cut(s)	25, 212, 304
NmuCI	GTSAC	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 107
PdmI	GAANNNNTTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	399
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	25, 212, 304
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	2 cut(s)	25, 124
RsaNI	GTAC	2 cut(s)	24, 123
RseI	CAYNNNNRTG	2 cut(s)	456, 516
SalI	GTCGAC	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	113, 407
SatI	GCNGC	1 cut(s)	398
Sau3AI	GATC	2 cut(s)	198, 556
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	9 cut(s)	51, 66, 93, 239, 364, 399, 420, 490, 528
SfcI	CTRYAG	1 cut(s)	478
SmiMI	CAYNNNNRTG	2 cut(s)	456, 516
Sse9I	AATT	2 cut(s)	138, 548
SsiI	CCGC	2 cut(s)	43, 80
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	3 cut(s)	28, 136, 173
TaiI	ACGT	3 cut(s)	51, 490, 528
TaqI	TCGA	2 cut(s)	334, 358
TasI	AATT	2 cut(s)	138, 548
Tru1I	TTAA	2 cut(s)	113, 407
Tru9I	TTAA	2 cut(s)	113, 407
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	526
VneI	GTGCAC	1 cut(s)	321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XmiI	GTMKAC	2 cut(s)	358, 477
XmnI	GAANNNNTTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.