Rorug01G0116200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001205
Physical Location & Seq
Forward (+)
20432543 .. 20433174
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0116200.1

Sequence Viewer

Length: 498 bp
ATGTTACCGCTCGCTGCTCTCTCACTGCCCCCATTCCAATTCCCATACCCTTTAAATTCCACAACAATACCTCTATCTATTCCCGCCCAACAATATACCCACCTCAATTCTTTCTCTTCTTCTTCGCTCCTCAAAACCCAAACCCAAATCCCCAAAAGACCCATCAGATTCGTAGCGCTCGCAAACAACAACAACAATGGTTTGAACCAGGAGAAGGAAGAGGAGAAAGAGAAAGAGCAAGGAATTGGGTCCAACGGCGGCGGAGATGGGTCGGGGAAGAATCAGCGGTCTATATTCAGCAACATCAGGTGGGGCGATCTGCTGCTGGACCCAGATCCTAACAACATCTTGGCCGTCGGATTGACGGGGATACTGACATGGGCAAGCGTGCAGGTTCTATGGCAGCTCTTGTTCATCTCGTTGGCTATACTCGTTGCTGCTGTTAAGTATTCCTTCATTGCTGCTGTTCTTCTTTTCATTCTCATTACCCTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.03

Weight (kDa)

8.01

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
AccBSI CCGCTC 1 cut(s) 10
AciI CCGC 5 cut(s) 8, 84, 258, 261, 286
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 1 cut(s) 55
AfeI AGCGCT 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
AlwI GGATC 1 cut(s) 329
Aor51HI AGCGCT 1 cut(s) 177
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 5 cut(s) 14, 322, 403, 437, 461
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 2 cut(s) 249, 328
AvaII GGWCC 2 cut(s) 249, 328
BbvI GCAGC 4 cut(s) 309, 415, 424, 448
BccI CCATC 2 cut(s) 170, 260
BceAI ACGGC 2 cut(s) 271, 338
BciT130I CCWGG 1 cut(s) 209
BciVI GTATCC 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 382
BfuI GTATCC 1 cut(s) 363
BisI GCNGC 6 cut(s) 15, 259, 323, 404, 438, 462
BlsI GCNGC 6 cut(s) 16, 260, 324, 405, 439, 463
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 2 cut(s) 249, 328
BmgT120I GGNCC 2 cut(s) 249, 328
BmiI GGNNCC 2 cut(s) 250, 330
BmrFI CCNGG 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 456
BseRI GAGGAG 2 cut(s) 119, 236
BseXI GCAGC 4 cut(s) 309, 415, 424, 448
BsgI GTGCAG 1 cut(s) 410
BshFI GGCC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 214
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 2 cut(s) 316, 334
BspACI CCGC 5 cut(s) 8, 84, 258, 261, 286
BspANI GGCC 1 cut(s) 353
BspLI GGNNCC 2 cut(s) 250, 330
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 456
BssMI GATC 2 cut(s) 316, 334
Bst2UI CCWGG 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 121, 213
BstC8I GCNNGC 4 cut(s) 12, 180, 385, 389
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 2 cut(s) 319, 337
BstMBI GATC 2 cut(s) 316, 334
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 309, 415, 424, 448
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 1 cut(s) 353
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 4 cut(s) 12, 180, 385, 389
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 249, 328
CviAII CATG 1 cut(s) 378
CviJI RGCY 3 cut(s) 353, 406, 425
CviKI_1 RGCY 3 cut(s) 353, 406, 425
DpnI GATC 2 cut(s) 318, 336
DpnII GATC 2 cut(s) 316, 334
DraI TTTAAA 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 121, 213
EarI CTCTTC 2 cut(s) 121, 213
EciI GGCGGA 1 cut(s) 276
Eco47I GGWCC 2 cut(s) 249, 328
Eco47III AGCGCT 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 381
FaiI YATR 6 cut(s) 46, 96, 293, 379, 400, 428
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FatI CATG 1 cut(s) 377
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 6 cut(s) 15, 259, 323, 404, 438, 462
Fsp4HI GCNGC 6 cut(s) 15, 259, 323, 404, 438, 462
GlaI GCGC 1 cut(s) 177
GluI GCNGC 6 cut(s) 15, 259, 323, 404, 438, 462
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 1 cut(s) 353
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 381
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 2 cut(s) 168, 280
Hpy188I TCNGA 2 cut(s) 167, 359
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 208, 463
HpyCH4V TGCA 1 cut(s) 391
Hsp92II CATG 1 cut(s) 381
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 2 cut(s) 316, 334
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 6 cut(s) 194, 221, 292, 311, 345, 377
Lsp1109I GCAGC 4 cut(s) 309, 415, 424, 448
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 318, 336
MbiI CCGCTC 1 cut(s) 10
MboI GATC 2 cut(s) 316, 334
MboII GAAGA 6 cut(s) 108, 111, 114, 230, 289, 461
MflI RGATCY 1 cut(s) 334
MluCI AATT 4 cut(s) 38, 55, 106, 243
MmeI TCCRAC 2 cut(s) 276, 337
MnlI CCTC 4 cut(s) 81, 113, 140, 214
MseI TTAA 3 cut(s) 53, 444, 496
MspA1I CMGCKG 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
NdeII GATC 2 cut(s) 316, 334
NlaIII CATG 1 cut(s) 381
NlaIV GGNNCC 2 cut(s) 250, 330
PfeI GAWTC 2 cut(s) 168, 280
PkrI GCNGC 6 cut(s) 16, 260, 324, 405, 439, 463
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 250, 330
PspPI GGNCC 2 cut(s) 249, 328
PsuI RGATCY 1 cut(s) 334
SaqAI TTAA 3 cut(s) 53, 444, 496
SatI GCNGC 6 cut(s) 15, 259, 323, 404, 438, 462
Sau3AI GATC 2 cut(s) 316, 334
Sau96I GGNCC 2 cut(s) 249, 328
ScrFI CCNGG 1 cut(s) 209
SetI ASST 5 cut(s) 73, 105, 311, 396, 408
SinI GGWCC 2 cut(s) 249, 328
Sse9I AATT 4 cut(s) 38, 55, 106, 243
SsiI CCGC 5 cut(s) 8, 84, 258, 261, 286
StyD4I CCNGG 1 cut(s) 207
TasI AATT 4 cut(s) 38, 55, 106, 243
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 2 cut(s) 168, 280
Tru1I TTAA 3 cut(s) 53, 444, 496
Tru9I TTAA 3 cut(s) 53, 444, 496
TscAI CASTG 1 cut(s) 30
TseI GCWGC 5 cut(s) 14, 322, 403, 437, 461
TspDTI ATGAA 3 cut(s) 403, 445, 466
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 249, 328
XapI RAATTY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.