FvH4_1g08691

RRP12-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000835
Physical Location & Seq
Reverse (-)
4624447 .. 4626934
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08691.t1

Sequence Viewer

Length: 1716 bp
ATGGAAACCCTAGACGACGACGGCGCGAACATTGGCTTCTCAATCCTGATGCGGTTCACCGACGCCACGAGCGAAATCGACCTCGAAATCCGCAAGCTCATAACCGTAATCTGCCAAGTACTGCGAGACCACAAGGCTCCTCCGACGCCGGTGCCCTACTTGCGCGCCGCGTGCTCCTGTCTGGACCTGATCGCCGCCGCGAGGCCCCGACCTTCCCGTGAAGAGCTTCACGCCCGCTTCACAATCCTCTCCTACGTCATCCCCAAAGTCCCGGTCGCATTTCTCGTCAATAATCTGCAGATGGTCTGCAATTCCTTAGGCCCAGCTCTTCGGGTTGCCTCTCTGATGTGGCATGATGCTGCCGCCTGCGCCGGAATTAAATGCATTGCTCAATTGCTCATCAGCGTCTCCAATTACAGCTGGTCACAAGTTTCCGAAACCTTTGGGTTCTTACTCAGCTATGCTAATGACAATATGAAGAGTTTCGAGGTAAGAAAACAAGCGCGTTTGATTGTTTACGATACACTCCAAAGTTTTGTAGCAACTCCGCTGCTGTTGGGACCTGCAATTAAAACGATTATGGACTTGTTCATGAACTACTATCCTATCCGGCCGACCAGTGATGGAGTTATTAGCCTCAAGGCCGAGGATACTTTGGATCTTGTGATAGTATGCCTTGGCGTTATGTCAACCGAGGACAGAACTGCTGTGCTCGTCTATTTGAAAGAGCTCTTGGAACTGAACCATACAGATCTCACAGGAATCATCACAGATGCTCTGCACAGACTCTTCCTCAACCCATCATTACCCGATGTTCCTGTCGAATTGTTGCTCGAGCTAATATGCTCAATATGTCTTTCTGTCTCCCAACACAAGACCAAGTACATCATGAAAAAAGTAGCTGGTTTGCTCAATTCCGGAGTGCCGAAAATCTATTCCCTCAACAAGCAAATCTGCAAAACTAAACTCCCAGTTGTGTTTAATGCACTCATTGTTTTGCTCGAACAGTCTGAAGAAGTAACAGACGTCCTTGAAGCAGGAAATGCCTTTAAGTGTCTCATTGCTTATATTGATGACAGCTTGATTAAACAGGGAGTTGACAGTACTCTGAAGAATGCAAATATGGACGATGGGAGCCAGTCTCAGCCAACTCTAATTGAAAAACTGTGTGCTACTTTTCAGAAGTTACTTTCTTATCCTACTGAGCTACGCCTGGTTTTTGAAATTGTCTCGGCTATGTTCGAAAAACTAGGAGAATACTCTTCTTATTTGATGAGGGATACAGTCAAAACCTTGGCAGACATGCAGAAATTGTGCGATAACAAATTCTTTTTCAAGGAGGAGGGTAAGCTTCTTCTGAAAATGGTTGTTGAGAAATGTGGGCTTGATGCTATTATGGCCATCATCCCTCAGGAACACGTGGAACTGCTTGCAGAGATCAATCAACAACTGGGTTCTAAATCTGTGGATGCGAGTTCTCGTGTAGTCAAAGCAACTACATATGGGAATAACTTATCTCAGTCCATGAATATGCACAAGGATGATCTTAAATATGTAACATTCATGAATTACAAACTGAAAACGGCTGGTAAAAAGTGTTTGTCTGATCGCCAGCTGAGAGCATTTTTGGATAAGCAGGCTAAGAGGCGCGCTGAGAAGGCCATCAGTGGAGGACTAGCAGGTGCAGCTAAGATGACAAAGAAGCTTAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

572

Amino Acids

63.54

Weight (kDa)

8.21

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_RRP12_N PF25772 4 - 268 1.3e-40 RRP12-like, N-terminal HEAT repeats
RRP12_HEAT PF08161 348 - 472 5.8e-13 Ribosomal RNA-processing protein 12, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1670
AatII GACGTC 1 cut(s) 1029
Acc36I ACCTGC 2 cut(s) 571, 1670
AccB1I GGYRCC 1 cut(s) 151
AccII CGCG 6 cut(s) 26, 165, 170, 200, 505, 1650
AccIII TCCGGA 1 cut(s) 917
AciI CCGC 8 cut(s) 52, 91, 168, 195, 198, 235, 363, 548
AclWI GGATC 1 cut(s) 666
AcoI YGGCCR 2 cut(s) 611, 1398
AcsI RAATTY 1 cut(s) 1325
AcuI CTGAAG 2 cut(s) 1032, 1130
AcvI CACGTG 1 cut(s) 1420
AcyI GRCGYC 3 cut(s) 63, 146, 1026
AfaI GTAC 3 cut(s) 120, 884, 1105
AfiI CCNNNNNNNGG 1 cut(s) 201
AflIII ACRYGT 1 cut(s) 1417
AgsI TTSAA 5 cut(s) 724, 1034, 1160, 1223, 1336
AjnI CCWGG 1 cut(s) 1212
AjuI GAANNNNNNNTTGG 2 cut(s) 716, 748
Alw21I GWGCWC 3 cut(s) 176, 714, 732
Alw26I GTCTC 6 cut(s) 120, 412, 868, 1061, 1146, 1234
AlwI GGATC 1 cut(s) 666
Ama87I CYCGRG 1 cut(s) 833
Aor13HI TCCGGA 1 cut(s) 917
AoxI GGCC 6 cut(s) 203, 319, 611, 642, 1398, 1659
ApeKI GCWGC 3 cut(s) 359, 550, 1685
ApoI RAATTY 1 cut(s) 1325
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
Asp700I GAANNNNTTC 2 cut(s) 225, 482
AspLEI GCGC 7 cut(s) 26, 165, 167, 371, 505, 1650, 1652
AspS9I GGNCC 4 cut(s) 184, 204, 320, 560
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 1242
AvaI CYCGRG 1 cut(s) 833
AvaII GGWCC 2 cut(s) 184, 560
AxyI CCTNAGG 2 cut(s) 316, 1410
BaeGI GKGCMC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 1400
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 732
BauI CACGAG 2 cut(s) 67, 1479
BbrPI CACGTG 1 cut(s) 1420
Bbv12I GWGCWC 3 cut(s) 176, 714, 732
BbvI GCAGC 3 cut(s) 346, 537, 1697
BccI CCATC 6 cut(s) 295, 617, 808, 1124, 1409, 1670
BceAI ACGGC 2 cut(s) 37, 1599
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciT130I CCWGG 1 cut(s) 1214
BciVI GTATCC 2 cut(s) 643, 1273
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 6 cut(s) 120, 412, 868, 1061, 1146, 1234
BfaI CTAG 3 cut(s) 11, 1250, 1676
BfmI CTRYAG 1 cut(s) 296
BfuAI ACCTGC 2 cut(s) 571, 1670
BfuI GTATCC 2 cut(s) 643, 1273
BglII AGATCT 1 cut(s) 751
BisI GCNGC 7 cut(s) 168, 195, 198, 360, 363, 551, 1686
BlsI GCNGC 7 cut(s) 169, 196, 199, 361, 364, 552, 1687
BmcAI AGTACT 2 cut(s) 120, 1105
Bme1390I CCNGG 2 cut(s) 272, 1214
Bme18I GGWCC 2 cut(s) 184, 560
BmeT110I CYCGRG 1 cut(s) 833
BmgT120I GGNCC 4 cut(s) 184, 204, 320, 560
BmiI GGNNCC 5 cut(s) 138, 153, 206, 561, 1136
BmrFI CCNGG 2 cut(s) 272, 1214
BmrI ACTGGG 2 cut(s) 965, 1460
BmsI GCATC 5 cut(s) 39, 346, 763, 1378, 1459
BmuI ACTGGG 2 cut(s) 965, 1460
BplI GAGNNNNNCTC 2 cut(s) 1126, 1158
Bpu14I TTCGAA 1 cut(s) 1242
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 1420
BsaHI GRCGYC 3 cut(s) 63, 146, 1026
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 4 cut(s) 645, 676, 693, 1293
BsaWI WCCGGW 1 cut(s) 917
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 4 cut(s) 618, 971, 1138, 1455
Bse21I CCTNAGG 2 cut(s) 316, 1410
Bse3DI GCAATG 2 cut(s) 384, 1059
BseAI TCCGGA 1 cut(s) 917
BseBI CCWGG 1 cut(s) 1214
BseDI CCNNGG 4 cut(s) 645, 676, 693, 1293
BseGI GGATG 4 cut(s) 258, 1404, 1474, 1546
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 2 cut(s) 384, 1059
BseMII CTCAG 7 cut(s) 469, 1157, 1194, 1424, 1532, 1607, 1644
BseNI ACTGG 4 cut(s) 618, 971, 1138, 1455
BsePI GCGCGC 2 cut(s) 163, 1648
BseRI GAGGAG 2 cut(s) 129, 1355
BseSI GKGCMC 1 cut(s) 156
BseX3I CGGCCG 1 cut(s) 611
BseXI GCAGC 3 cut(s) 346, 537, 1697
BseYI CCCAGC 1 cut(s) 322
BsgI GTGCAG 2 cut(s) 764, 1704
Bsh1236I CGCG 6 cut(s) 26, 165, 170, 200, 505, 1650
Bsh1285I CGRYCG 2 cut(s) 276, 614
BshFI GGCC 6 cut(s) 205, 321, 613, 644, 1400, 1661
BshNI GGYRCC 1 cut(s) 151
BsiEI CGRYCG 2 cut(s) 276, 614
BsiHKAI GWGCWC 3 cut(s) 176, 714, 732
BsiHKCI CYCGRG 1 cut(s) 833
BsiSI CCGG 5 cut(s) 149, 272, 372, 610, 918
BslFI GGGAC 2 cut(s) 254, 573
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 6 cut(s) 120, 412, 868, 1061, 1146, 1234
BsmBI CGTCTC 1 cut(s) 412
BsmFI GGGAC 2 cut(s) 254, 573
BsmI GAATGC 1 cut(s) 1120
BsnI GGCC 6 cut(s) 205, 321, 613, 644, 1400, 1661
Bso31I GGTCTC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 833
Bsp119I TTCGAA 1 cut(s) 1242
Bsp1286I GDGCHC 4 cut(s) 156, 176, 714, 732
Bsp13I TCCGGA 1 cut(s) 917
Bsp143I GATC 6 cut(s) 189, 658, 751, 1437, 1543, 1606
BspACI CCGC 8 cut(s) 52, 91, 168, 195, 198, 235, 363, 548
BspANI GGCC 6 cut(s) 205, 321, 613, 644, 1400, 1661
BspCNI CTCAG 7 cut(s) 468, 1156, 1195, 1423, 1531, 1608, 1645
BspEI TCCGGA 1 cut(s) 917
BspFNI CGCG 6 cut(s) 26, 165, 170, 200, 505, 1650
BspHI TCATGA 3 cut(s) 591, 888, 1563
BspLI GGNNCC 5 cut(s) 138, 153, 206, 561, 1136
BspMAI CTGCAG 1 cut(s) 300
BspMI ACCTGC 2 cut(s) 571, 1670
BspPI GGATC 1 cut(s) 666
BspQI GCTCTTC 2 cut(s) 216, 333
BspT104I TTCGAA 1 cut(s) 1242
BspT107I GGYRCC 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 120
BsrDI GCAATG 2 cut(s) 384, 1059
BsrFI RCCGGY 1 cut(s) 148
BsrI ACTGG 4 cut(s) 618, 971, 1138, 1455
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 4 cut(s) 645, 676, 693, 1293
BssHII GCGCGC 2 cut(s) 163, 1648
BssMI GATC 6 cut(s) 189, 658, 751, 1437, 1543, 1606
BssNI GRCGYC 3 cut(s) 63, 146, 1026
BssSI CACGAG 2 cut(s) 67, 1479
BssT1I CCWWGG 2 cut(s) 676, 1293
Bst2BI CACGAG 2 cut(s) 67, 1479
Bst2UI CCWGG 1 cut(s) 1214
Bst4CI ACNGT 5 cut(s) 106, 1008, 1103, 1167, 1285
Bst6I CTCTTC 5 cut(s) 216, 333, 473, 794, 1267
BstACI GRCGYC 3 cut(s) 63, 146, 1026
BstAPI GCANNNNNTGC 1 cut(s) 1043
BstBAI YACGTR 1 cut(s) 1420
BstBI TTCGAA 1 cut(s) 1242
BstC8I GCNNGC 9 cut(s) 95, 165, 172, 235, 367, 1431, 1613, 1638, 1650
BstF5I GGATG 4 cut(s) 258, 1404, 1474, 1546
BstFNI CGCG 6 cut(s) 26, 165, 170, 200, 505, 1650
BstHHI GCGC 7 cut(s) 26, 165, 167, 371, 505, 1650, 1652
BstKTI GATC 6 cut(s) 192, 661, 754, 1440, 1546, 1609
BstMAI GTCTC 6 cut(s) 120, 412, 868, 1061, 1146, 1234
BstMBI GATC 6 cut(s) 189, 658, 751, 1437, 1543, 1606
BstMCI CGRYCG 2 cut(s) 276, 614
BstMWI GCNNNNNNNGC 7 cut(s) 160, 171, 368, 1043, 1397, 1658, 1685
BstNI CCWGG 1 cut(s) 1214
BstNSI RCATGY 1 cut(s) 1306
BstSCI CCNGG 2 cut(s) 270, 1212
BstSFI CTRYAG 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 156
BstUI CGCG 6 cut(s) 26, 165, 170, 200, 505, 1650
BstV1I GCAGC 3 cut(s) 346, 537, 1697
BstX2I RGATCY 2 cut(s) 658, 751
BstYI RGATCY 2 cut(s) 658, 751
BstZI CGGCCG 1 cut(s) 611
Bsu36I CCTNAGG 2 cut(s) 316, 1410
BsuI GTATCC 2 cut(s) 643, 1273
BsuRI GGCC 6 cut(s) 205, 321, 613, 644, 1400, 1661
BtsCI GGATG 4 cut(s) 258, 1404, 1474, 1546
BtsIMutI CAGTG 2 cut(s) 625, 1672
BveI ACCTGC 2 cut(s) 571, 1670
Cac8I GCNNGC 9 cut(s) 95, 165, 172, 235, 367, 1431, 1613, 1638, 1650
CciI TCATGA 3 cut(s) 591, 888, 1563
CfoI GCGC 7 cut(s) 26, 165, 167, 371, 505, 1650, 1652
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 4 cut(s) 184, 204, 320, 560
CseI GACGC 3 cut(s) 71, 154, 394
Csp6I GTAC 3 cut(s) 119, 883, 1104
CviAII CATG 6 cut(s) 353, 592, 889, 1303, 1525, 1564
CviQI GTAC 3 cut(s) 119, 883, 1104
DpnI GATC 6 cut(s) 191, 660, 753, 1439, 1545, 1608
DpnII GATC 6 cut(s) 189, 658, 751, 1437, 1543, 1606
EaeI YGGCCR 2 cut(s) 611, 1398
EagI CGGCCG 1 cut(s) 611
Eam1104I CTCTTC 5 cut(s) 216, 333, 473, 794, 1267
EarI CTCTTC 5 cut(s) 216, 333, 473, 794, 1267
Ecl136II GAGCTC 1 cut(s) 730
EclXI CGGCCG 1 cut(s) 611
Eco130I CCWWGG 2 cut(s) 676, 1293
Eco24I GRGCYC 1 cut(s) 732
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 184, 560
Eco52I CGGCCG 1 cut(s) 611
Eco53kI GAGCTC 1 cut(s) 730
Eco57I CTGAAG 2 cut(s) 1032, 1130
Eco72I CACGTG 1 cut(s) 1420
Eco81I CCTNAGG 2 cut(s) 316, 1410
Eco88I CYCGRG 1 cut(s) 833
EcoICRI GAGCTC 1 cut(s) 730
EcoO109I RGGNCCY 2 cut(s) 204, 560
EcoRII CCWGG 1 cut(s) 1212
EcoT14I CCWWGG 2 cut(s) 676, 1293
EcoT22I ATGCAT 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 732
ErhI CCWWGG 2 cut(s) 676, 1293
Esp3I CGTCTC 1 cut(s) 412
FaeI CATG 6 cut(s) 356, 595, 892, 1306, 1528, 1567
FaqI GGGAC 2 cut(s) 254, 573
FatI CATG 6 cut(s) 352, 591, 888, 1302, 1524, 1563
FauI CCCGC 1 cut(s) 242
FauNDI CATATG 1 cut(s) 1501
Fnu4HI GCNGC 7 cut(s) 168, 195, 198, 360, 363, 551, 1686
FokI GGATG 4 cut(s) 245, 1391, 1481, 1553
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 7 cut(s) 168, 195, 198, 360, 363, 551, 1686
FspBI CTAG 3 cut(s) 11, 1250, 1676
GlaI GCGC 7 cut(s) 25, 164, 166, 370, 504, 1649, 1651
GluI GCNGC 7 cut(s) 168, 195, 198, 360, 363, 551, 1686
GsaI CCCAGC 1 cut(s) 326
HaeIII GGCC 6 cut(s) 205, 321, 613, 644, 1400, 1661
HapII CCGG 5 cut(s) 149, 272, 372, 610, 918
HgaI GACGC 3 cut(s) 71, 154, 394
HhaI GCGC 7 cut(s) 26, 165, 167, 371, 505, 1650, 1652
Hin1I GRCGYC 3 cut(s) 63, 146, 1026
Hin1II CATG 6 cut(s) 356, 595, 892, 1306, 1528, 1567
Hin6I GCGC 7 cut(s) 24, 163, 165, 369, 503, 1648, 1650
HinP1I GCGC 7 cut(s) 24, 163, 165, 369, 503, 1648, 1650
HincII GTYRAC 2 cut(s) 690, 1099
HindII GTYRAC 2 cut(s) 690, 1099
HindIII AAGCTT 2 cut(s) 1349, 1703
HinfI GANTC 2 cut(s) 762, 786
HpaII CCGG 5 cut(s) 149, 272, 372, 610, 918
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 4 cut(s) 57, 517, 690, 1099
Hpy188I TCNGA 8 cut(s) 144, 345, 436, 1012, 1110, 1182, 1359, 1606
Hpy188III TCNNGA 7 cut(s) 46, 182, 592, 889, 918, 1412, 1564
Hpy8I GTNNAC 4 cut(s) 57, 517, 690, 1099
Hpy99I CGWCG 4 cut(s) 20, 23, 65, 148
HpyAV CCTTC 2 cut(s) 222, 1651
HpyCH4III ACNGT 5 cut(s) 106, 1008, 1103, 1167, 1285
HpyCH4IV ACGT 3 cut(s) 255, 1026, 1419
HpyF10VI GCNNNNNNNGC 7 cut(s) 160, 171, 368, 1043, 1397, 1658, 1685
HpySE526I ACGT 3 cut(s) 255, 1026, 1419
Hsp92I GRCGYC 3 cut(s) 63, 146, 1026
Hsp92II CATG 6 cut(s) 356, 595, 892, 1306, 1528, 1567
HspAI GCGC 7 cut(s) 24, 163, 165, 369, 503, 1648, 1650
Kpn2I TCCGGA 1 cut(s) 917
Kzo9I GATC 6 cut(s) 189, 658, 751, 1437, 1543, 1606
LguI GCTCTTC 2 cut(s) 216, 333
LmnI GCTCC 3 cut(s) 142, 179, 1134
Lsp1109I GCAGC 3 cut(s) 346, 537, 1697
LweI GCATC 5 cut(s) 39, 346, 763, 1378, 1459
MaeI CTAG 3 cut(s) 11, 1250, 1676
MaeII ACGT 3 cut(s) 255, 1026, 1419
MaeIII GTNAC 4 cut(s) 423, 1018, 1185, 1555
MalI GATC 6 cut(s) 191, 660, 753, 1439, 1545, 1608
MboI GATC 6 cut(s) 189, 658, 751, 1437, 1543, 1606
MboII GAAGA 8 cut(s) 233, 320, 490, 781, 1025, 1123, 1254, 1346
MfeI CAATTG 1 cut(s) 392
MflI RGATCY 2 cut(s) 658, 751
MhlI GDGCHC 4 cut(s) 156, 176, 714, 732
MlsI TGGCCA 1 cut(s) 1400
MluNI TGGCCA 1 cut(s) 1400
MlyI GAGTC 1 cut(s) 780
MmeI TCCRAC 1 cut(s) 167
Mox20I TGGCCA 1 cut(s) 1400
Mph1103I ATGCAT 1 cut(s) 386
MroI TCCGGA 1 cut(s) 917
MroXI GAANNNNTTC 2 cut(s) 225, 482
MscI TGGCCA 1 cut(s) 1400
MseI TTAA 7 cut(s) 378, 570, 981, 1050, 1086, 1548, 1707
MslI CAYNNNNRTG 2 cut(s) 1529, 1539
Msp20I TGGCCA 1 cut(s) 1400
MspA1I CMGCKG 3 cut(s) 420, 550, 1615
MspI CCGG 5 cut(s) 149, 272, 372, 610, 918
MspR9I CCNGG 2 cut(s) 272, 1214
MunI CAATTG 1 cut(s) 392
Mva1269I GAATGC 1 cut(s) 1120
MvaI CCWGG 1 cut(s) 1214
MvnI CGCG 6 cut(s) 26, 165, 170, 200, 505, 1650
MwoI GCNNNNNNNGC 7 cut(s) 160, 171, 368, 1043, 1397, 1658, 1685
NciI CCSGG 1 cut(s) 272
NdeI CATATG 1 cut(s) 1501
NdeII GATC 6 cut(s) 189, 658, 751, 1437, 1543, 1606
NlaIII CATG 6 cut(s) 356, 595, 892, 1306, 1528, 1567
NlaIV GGNNCC 5 cut(s) 138, 153, 206, 561, 1136
NmeAIII GCCGAG 2 cut(s) 670, 1211
NmuCI GTSAC 1 cut(s) 423
NsiI ATGCAT 1 cut(s) 386
NspI RCATGY 1 cut(s) 1306
NspV TTCGAA 1 cut(s) 1242
PaeR7I CTCGAG 1 cut(s) 833
PagI TCATGA 3 cut(s) 591, 888, 1563
PaqCI CACCTGC 1 cut(s) 1670
PauI GCGCGC 2 cut(s) 163, 1648
PciSI GCTCTTC 2 cut(s) 216, 333
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 282
PctI GAATGC 1 cut(s) 1120
PdmI GAANNNNTTC 2 cut(s) 225, 482
PfeI GAWTC 1 cut(s) 762
PkrI GCNGC 7 cut(s) 169, 196, 199, 361, 364, 552, 1687
PleI GAGTC 1 cut(s) 780
PmaCI CACGTG 1 cut(s) 1420
PmlI CACGTG 1 cut(s) 1420
PpsI GAGTC 1 cut(s) 780
Ppu21I YACGTR 1 cut(s) 1420
PpuMI RGGWCCY 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 732
Psp5II RGGWCCY 1 cut(s) 560
Psp6I CCWGG 1 cut(s) 1212
PspCI CACGTG 1 cut(s) 1420
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 1 cut(s) 1212
PspN4I GGNNCC 5 cut(s) 138, 153, 206, 561, 1136
PspPI GGNCC 4 cut(s) 184, 204, 320, 560
PspPPI RGGWCCY 1 cut(s) 560
PspXI VCTCGAGB 1 cut(s) 833
PstI CTGCAG 1 cut(s) 300
PsuI RGATCY 2 cut(s) 658, 751
PteI GCGCGC 2 cut(s) 163, 1648
PvuII CAGCTG 2 cut(s) 420, 1615
RsaI GTAC 3 cut(s) 120, 884, 1105
RsaNI GTAC 3 cut(s) 119, 883, 1104
RseI CAYNNNNRTG 2 cut(s) 1529, 1539
SacI GAGCTC 1 cut(s) 732
SapI GCTCTTC 2 cut(s) 216, 333
SaqAI TTAA 7 cut(s) 378, 570, 981, 1050, 1086, 1548, 1707
SatI GCNGC 7 cut(s) 168, 195, 198, 360, 363, 551, 1686
Sau3AI GATC 6 cut(s) 189, 658, 751, 1437, 1543, 1606
Sau96I GGNCC 4 cut(s) 184, 204, 320, 560
ScaI AGTACT 2 cut(s) 120, 1105
SchI GAGTC 1 cut(s) 780
ScrFI CCNGG 2 cut(s) 272, 1214
SduI GDGCHC 4 cut(s) 156, 176, 714, 732
SfaNI GCATC 5 cut(s) 39, 346, 763, 1378, 1459
SfcI CTRYAG 1 cut(s) 296
Sfr274I CTCGAG 1 cut(s) 833
SfuI TTCGAA 1 cut(s) 1242
SgrAI CRCCGGYG 1 cut(s) 148
SinI GGWCC 2 cut(s) 184, 560
SlaI CTCGAG 1 cut(s) 833
SmiMI CAYNNNNRTG 2 cut(s) 1529, 1539
SmlI CTYRAG 2 cut(s) 638, 833
SmoI CTYRAG 2 cut(s) 638, 833
SsiI CCGC 8 cut(s) 52, 91, 168, 195, 198, 235, 363, 548
SspMI CTAG 3 cut(s) 11, 1250, 1676
SstI GAGCTC 1 cut(s) 732
StyD4I CCNGG 2 cut(s) 270, 1212
StyI CCWWGG 2 cut(s) 676, 1293
TaaI ACNGT 5 cut(s) 106, 1008, 1103, 1167, 1285
TaiI ACGT 3 cut(s) 258, 1029, 1422
TaqI TCGA 7 cut(s) 78, 84, 486, 822, 834, 1002, 1242
TatI WGTACW 3 cut(s) 118, 882, 1103
TauI GCSGC 4 cut(s) 170, 197, 200, 365
TfiI GAWTC 1 cut(s) 762
Tru1I TTAA 7 cut(s) 378, 570, 981, 1050, 1086, 1548, 1707
Tru9I TTAA 7 cut(s) 378, 570, 981, 1050, 1086, 1548, 1707
TscAI CASTG 2 cut(s) 625, 1672
TseFI GTSAC 1 cut(s) 423
TseI GCWGC 3 cut(s) 359, 550, 1685
Tsp45I GTSAC 1 cut(s) 423
TspDTI ATGAA 7 cut(s) 491, 580, 608, 905, 1541, 1552, 1580
TspRI CASTG 2 cut(s) 625, 1672
VpaK11BI GGWCC 2 cut(s) 184, 560
XapI RAATTY 1 cut(s) 1325
XceI RCATGY 1 cut(s) 1306
XhoI CTCGAG 1 cut(s) 833
XmnI GAANNNNTTC 2 cut(s) 225, 482
XspI CTAG 3 cut(s) 11, 1250, 1676
ZraI GACGTC 1 cut(s) 1027
ZrmI AGTACT 2 cut(s) 120, 1105
Zsp2I ATGCAT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.