Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8359019.1

Orthogroup ID

OG0000835

Physical Location & Seq

Genomic Coordinates Forward (+)

28 .. 1073

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8359019.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 869 bp

atgtgccaggtattccgagaccacaaggctcctccgacgccgctggcctacttgggcgcaacgtgctcctctctcgacctgatcgccgcttcgaagccccgaccttccgatgacgtgctccacgcccacatcataattctgtccatcgtcatccccaaagtcccgccagcatttctcatcaacaatctccagttggtctgcaattccttagccccagctcttcgttcttcatccccaagcttcgacggtgccgcctgcacaggagttaaatgcatagctcaattgctcattagcagcactaactgcgtcaacaactggtcacaagtttcgaaacccttcaggctcttgttcagattcgcttatgtctccagcatcgaggtaagagaacaagcaggtttgtgtgttcacgacacactgcaaagttttcgaggaactcccctgtttggccctgcaaataaaaccattactgacttgttaatgaaaaagtatcctccgccacgtgtggaatcaaatactgatggagttaatagcatcgaacaacgcaaggccatgcatactttgaatcttgtgatgctatcccttggcgctatgtcaaccgaggacagaactgctgtgctcgtctactttatggatctcttagaactgcaccatacctatgttacaagactcatcacagatgctctgtacagattctgcctcaatccatcatcaccagatgttgacctcgaattgttgctcgatctaatatgctcaatatgtctttctgtctcccaacacaagacgaattacatcatgaaaactatagctggtttgctcaattttggagtgcctaaagtctattccctgaacaagcaaatctgcaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC173

Protein Analysis

289

Amino Acids

31.88

Weight (kDa)

8.61

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08660 FvH4_1g08670 FvH4_1g08691 FvH4_1g08730 FvH4_1g08730 FvH4_1g08730 FvH4_1g08750 FvH4_1g21223 FvH4_5g05990 FvH4_5g06040 FvH4_7g02570
rosa_chinensis	RchiOBHm_Chr2g0094991 RchiOBHm_Chr2g0095061 RchiOBHm_Chr2g0095131
rosa_laevigata	RLG00000016526 RLG00000016535 RLG00000016538 RLG00000017601 RLG00000018151 RLG00000018152
rosa_multiflora	Rmu_co8218578.1_g000001 Rmu_co8302753.1_g000001 Rmu_co8359019.1_g000001 Rmu_sc0000784.1_g000025 Rmu_sc0003274.1_g000009 Rmu_sc0004316.1_g000009 Rmu_sc0004439.1_g000001 Rmu_sc0006422.1_g000029
rosa_roxburghii	Rroxscaffold_2G00130540 Rroxscaffold_2G00136050 Rroxscaffold_2G00146670 Rroxscaffold_2G00146700 Rroxscaffold_2G00146720 Rroxscaffold_2G00146740 Rroxscaffold_2G00146820
rosa_rugosa	Rorug02G0047600 Rorug02G0047900 Rorug02G0048300 Rorug02G0193000 Rorug02G0193100
rosa_samantha	Rh2AG094900 Rh2AG095900 Rh2AG096200 Rh2AG251600 Rh2BG095600 Rh2BG096900 Rh2BG097700 Rh2BG260900 Rh2BG261100 Rh2BG262700 Rh2BG262800 Rh2BG262900 Rh2CG097500 Rh2CG099000 Rh2CG099700 Rh2CG256100 Rh2CG256200 Rh2DG094300 Rh2DG095700 Rh2DG096400 Rh2DG097100 Rh2DG259500 Rh2DG259700 Rh7BG220800
rosa_wichuraiana	Rw2G007220 Rw2G007230 Rw2G007250 Rw2G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	5 cut(s)	41, 87, 164, 252, 494
AclWI	GGATC	1 cut(s)	639
AcuI	CTGAAG	1 cut(s)	322
AcvI	CACGTG	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	686
AfiI	CCNNNNNNNGG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	1 cut(s)	562
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	4 cut(s)	218, 240, 278, 806
AluI	AGCT	4 cut(s)	218, 240, 278, 806
Alw21I	GWGCWC	3 cut(s)	68, 120, 618
Alw26I	GTCTC	3 cut(s)	12, 370, 772
AlwI	GGATC	1 cut(s)	639
AlwNI	CAGNNNCTG	1 cut(s)	693
AoxI	GGCC	3 cut(s)	45, 445, 546
ApeKI	GCWGC	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	2 cut(s)	59, 587
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	702
AsuII	TTCGAA	2 cut(s)	92, 329
BanI	GGYRCC	1 cut(s)	248
BbrPI	CACGTG	1 cut(s)	500
Bbv12I	GWGCWC	3 cut(s)	68, 120, 618
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	3 cut(s)	152, 512, 712
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	1 cut(s)	8
BciVI	GTATCC	1 cut(s)	498
BcoDI	GTCTC	3 cut(s)	12, 370, 772
BfmI	CTRYAG	1 cut(s)	801
BfoI	RGCGCY	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	383
BfuI	GTATCC	1 cut(s)	498
BisI	GCNGC	4 cut(s)	41, 87, 252, 295
BlsI	GCNGC	4 cut(s)	42, 88, 253, 296
Bme1390I	CCNGG	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	30, 250
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	4 cut(s)	381, 540, 561, 667
BpmI	CTGGAG	2 cut(s)	173, 352
Bpu10I	CCTNAGC	1 cut(s)	208
Bpu14I	TTCGAA	2 cut(s)	92, 329
BsaAI	YACGTR	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	580, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	190, 320
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	2 cut(s)	580, 597
BseGI	GGATG	2 cut(s)	150, 230
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	190, 320
BseRI	GAGGAG	2 cut(s)	21, 58
BseXI	GCAGC	1 cut(s)	306
BseYI	CCCAGC	1 cut(s)	214
BsgI	GTGCAG	2 cut(s)	241, 629
BshFI	GGCC	3 cut(s)	47, 447, 548
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	3 cut(s)	68, 120, 618
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	3 cut(s)	12, 370, 772
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	47, 447, 548
Bso31I	GGTCTC	1 cut(s)	12
Bsp119I	TTCGAA	2 cut(s)	92, 329
Bsp1286I	GDGCHC	3 cut(s)	68, 120, 618
Bsp1407I	TGTACA	1 cut(s)	684
Bsp143I	GATC	3 cut(s)	81, 631, 739
BspACI	CCGC	5 cut(s)	41, 87, 164, 252, 494
BspANI	GGCC	3 cut(s)	47, 447, 548
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	2 cut(s)	30, 250
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	639
BspQI	GCTCTTC	1 cut(s)	225
BspT104I	TTCGAA	2 cut(s)	92, 329
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	684
BsrI	ACTGG	2 cut(s)	190, 320
BssECI	CCNNGG	2 cut(s)	580, 597
BssMI	GATC	3 cut(s)	81, 631, 739
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstAUI	TGTACA	1 cut(s)	684
BstBAI	YACGTR	1 cut(s)	500
BstBI	TTCGAA	2 cut(s)	92, 329
BstC8I	GCNNGC	3 cut(s)	45, 168, 256
BstDEI	CTNAG	2 cut(s)	208, 637
BstF5I	GGATG	2 cut(s)	150, 230
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	2 cut(s)	59, 587
BstKTI	GATC	3 cut(s)	84, 634, 742
BstMAI	GTCTC	3 cut(s)	12, 370, 772
BstMBI	GATC	3 cut(s)	81, 631, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 303
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstSFI	CTRYAG	1 cut(s)	801
BstV1I	GCAGC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	47, 447, 548
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	150, 230
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	413
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	3 cut(s)	45, 168, 256
CaiI	CAGNNNCTG	1 cut(s)	693
CciI	TCATGA	1 cut(s)	792
CfoI	GCGC	2 cut(s)	59, 587
Cfr13I	GGNCC	1 cut(s)	446
CseI	GACGC	2 cut(s)	46, 295
Csp6I	GTAC	1 cut(s)	685
CviAII	CATG	2 cut(s)	550, 793
CviQI	GTAC	1 cut(s)	685
DdeI	CTNAG	2 cut(s)	208, 637
DpnI	GATC	3 cut(s)	83, 633, 741
DpnII	GATC	3 cut(s)	81, 631, 739
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	580
Eco31I	GGTCTC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	322
Eco72I	CACGTG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	580
EcoT22I	ATGCAT	2 cut(s)	275, 555
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	2 cut(s)	553, 796
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	2 cut(s)	549, 792
FauI	CCCGC	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	4 cut(s)	41, 87, 252, 295
FokI	GGATG	2 cut(s)	137, 217
Fsp4HI	GCNGC	4 cut(s)	41, 87, 252, 295
GlaI	GCGC	2 cut(s)	58, 586
GluI	GCNGC	4 cut(s)	41, 87, 252, 295
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	2 cut(s)	173, 352
HaeII	RGCGCY	1 cut(s)	588
HaeIII	GGCC	3 cut(s)	47, 447, 548
HgaI	GACGC	2 cut(s)	46, 295
HhaI	GCGC	2 cut(s)	59, 587
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	553, 796
Hin6I	GCGC	2 cut(s)	57, 585
HinP1I	GCGC	2 cut(s)	57, 585
HincII	GTYRAC	3 cut(s)	310, 594, 721
HindII	GTYRAC	3 cut(s)	310, 594, 721
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	5 cut(s)	354, 506, 562, 666, 690
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	5 cut(s)	310, 406, 594, 622, 721
Hpy188I	TCNGA	4 cut(s)	17, 36, 109, 353
Hpy188III	TCNNGA	3 cut(s)	74, 407, 793
Hpy8I	GTNNAC	5 cut(s)	310, 406, 594, 622, 721
Hpy99I	CGWCG	2 cut(s)	40, 248
HpyAV	CCTTC	2 cut(s)	114, 346
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	3 cut(s)	62, 114, 499
HpyCH4V	TGCA	8 cut(s)	201, 258, 273, 418, 452, 553, 646, 861
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 303
HpyF3I	CTNAG	2 cut(s)	208, 637
HpySE526I	ACGT	3 cut(s)	62, 114, 499
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	553, 796
HspAI	GCGC	2 cut(s)	57, 585
Kzo9I	GATC	3 cut(s)	81, 631, 739
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	3 cut(s)	34, 71, 123
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	4 cut(s)	381, 540, 561, 667
MaeII	ACGT	3 cut(s)	62, 114, 499
MaeIII	GTNAC	2 cut(s)	318, 658
MalI	GATC	3 cut(s)	83, 633, 741
MboI	GATC	3 cut(s)	81, 631, 739
MboII	GAAGA	2 cut(s)	212, 219
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	3 cut(s)	68, 120, 618
MluCI	AATT	7 cut(s)	135, 202, 281, 728, 784, 817, 864
MlyI	GAGTC	1 cut(s)	660
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	8 cut(s)	42, 79, 370, 422, 501, 592, 707, 734
Mph1103I	ATGCAT	2 cut(s)	275, 555
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	4 cut(s)	267, 476, 525, 867
MslI	CAYNNNNRTG	1 cut(s)	654
MspA1I	CMGCKG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	8
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	63, 303
NdeII	GATC	3 cut(s)	81, 631, 739
NlaIII	CATG	2 cut(s)	553, 796
NlaIV	GGNNCC	2 cut(s)	30, 250
NmuCI	GTSAC	1 cut(s)	318
NsiI	ATGCAT	2 cut(s)	275, 555
NspV	TTCGAA	2 cut(s)	92, 329
PagI	TCATGA	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	4 cut(s)	354, 506, 562, 690
PkrI	GCNGC	4 cut(s)	42, 88, 253, 296
PleI	GAGTC	1 cut(s)	660
PmaCI	CACGTG	1 cut(s)	500
PmlI	CACGTG	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	660
Ppu21I	YACGTR	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	6
PspCI	CACGTG	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	30, 250
PspPI	GGNCC	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	693
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	1 cut(s)	686
RsaNI	GTAC	1 cut(s)	685
RseI	CAYNNNNRTG	1 cut(s)	654
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	4 cut(s)	267, 476, 525, 867
SatI	GCNGC	4 cut(s)	41, 87, 252, 295
Sau3AI	GATC	3 cut(s)	81, 631, 739
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	660
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	3 cut(s)	68, 120, 618
SfaNI	GCATC	4 cut(s)	381, 540, 561, 667
SfcI	CTRYAG	1 cut(s)	801
SfuI	TTCGAA	2 cut(s)	92, 329
SmiMI	CAYNNNNRTG	1 cut(s)	654
Sse9I	AATT	7 cut(s)	135, 202, 281, 728, 784, 817, 864
SsiI	CCGC	5 cut(s)	41, 87, 164, 252, 494
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	3 cut(s)	65, 117, 502
TaqI	TCGA	9 cut(s)	75, 92, 243, 329, 375, 427, 534, 726, 738
TasI	AATT	7 cut(s)	135, 202, 281, 728, 784, 817, 864
TatI	WGTACW	1 cut(s)	684
TauI	GCSGC	3 cut(s)	43, 89, 254
TfiI	GAWTC	4 cut(s)	354, 506, 562, 690
Tru1I	TTAA	4 cut(s)	267, 476, 525, 867
Tru9I	TTAA	4 cut(s)	267, 476, 525, 867
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	318
TseI	GCWGC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	318
TspDTI	ATGAA	3 cut(s)	219, 494, 809
TspRI	CASTG	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	621
XmnI	GAANNNNTTC	1 cut(s)	335
Zsp2I	ATGCAT	2 cut(s)	275, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.